Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetGHANDHI_BYSTANDER_IRRADIATION_UP
Enrichment Score (ES)0.7933375
Normalized Enrichment Score (NES)1.9193556
Nominal p-value0.0
FDR q-value0.0017230235
FWER p-Value0.013
Table: GSEA Results Summary



Fig 1: Enrichment plot: GHANDHI_BYSTANDER_IRRADIATION_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]34.9960.0443Yes
2PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]184.9240.0877Yes
3LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]254.8830.1309Yes
4DUSP5dual specificity phosphatase 5 [Source:HGNC Symbol;Acc:HGNC:3071]354.8380.1736Yes
5IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]434.7840.2159Yes
6NFKBIZNFKB inhibitor zeta [Source:HGNC Symbol;Acc:HGNC:29805]454.7520.2581Yes
7DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]514.6910.2997Yes
8SERPINB2serpin family B member 2 [Source:HGNC Symbol;Acc:HGNC:8584]744.5520.3395Yes
9CREB5cAMP responsive element binding protein 5 [Source:HGNC Symbol;Acc:HGNC:16844]954.4090.3782Yes
10SLC39A8solute carrier family 39 member 8 [Source:HGNC Symbol;Acc:HGNC:20862]974.4020.4172Yes
11BCL2A1BCL2 related protein A1 [Source:HGNC Symbol;Acc:HGNC:991]1084.3240.4554Yes
12SLC7A11solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]1744.0010.4892Yes
13OSGIN2oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]2383.7150.5205Yes
14POU2F2POU class 2 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9213]2413.7030.5533Yes
15IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]3053.5080.5828Yes
16GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]3903.2370.6093Yes
17SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]4972.9450.6326Yes
18SLC39A14solute carrier family 39 member 14 [Source:HGNC Symbol;Acc:HGNC:20858]5652.7960.6556Yes
19ZC3H12Czinc finger CCCH-type containing 12C [Source:HGNC Symbol;Acc:HGNC:29362]7702.4780.6721Yes
20TNFAIP3TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]7932.4310.6931Yes
21MT1Gmetallothionein 1G [Source:HGNC Symbol;Acc:HGNC:7399]8812.3190.7114Yes
22MT1Hmetallothionein 1H [Source:HGNC Symbol;Acc:HGNC:7400]13021.8760.7167Yes
23GCLMglutamate-cysteine ligase modifier subunit [Source:HGNC Symbol;Acc:HGNC:4312]13591.8620.7317Yes
24MT1Emetallothionein 1E [Source:HGNC Symbol;Acc:HGNC:7397]14271.7650.7456Yes
25AHRaryl hydrocarbon receptor [Source:HGNC Symbol;Acc:HGNC:348]16301.6080.7544Yes
26INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]20481.3230.7549Yes
27SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]20511.3180.7665Yes
28PLEK2pleckstrin 2 [Source:HGNC Symbol;Acc:HGNC:19238]20911.2980.7770Yes
29PPP4R3Bprotein phosphatase 4 regulatory subunit 3B [Source:HGNC Symbol;Acc:HGNC:29267]24601.1420.7772Yes
30TNFSF15TNF superfamily member 15 [Source:HGNC Symbol;Acc:HGNC:11931]27061.0470.7799Yes
31ZSWIM8zinc finger SWIM-type containing 8 [Source:HGNC Symbol;Acc:HGNC:23528]28440.9870.7850Yes
32MT1Bmetallothionein 1B [Source:HGNC Symbol;Acc:HGNC:7394]32450.8270.7815Yes
33C9orf72C9orf72-SMCR8 complex subunit [Source:HGNC Symbol;Acc:HGNC:28337]32740.8130.7880Yes
34TUT7terminal uridylyl transferase 7 [Source:HGNC Symbol;Acc:HGNC:25817]38690.6170.7774Yes
35RGS9regulator of G protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]39350.5960.7810Yes
36IRAK3interleukin 1 receptor associated kinase 3 [Source:HGNC Symbol;Acc:HGNC:17020]39560.5900.7857Yes
37SLC16A6solute carrier family 16 member 6 [Source:HGNC Symbol;Acc:HGNC:10927]39690.5870.7906Yes
38ATP6V1C1ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]40530.5660.7933Yes
39PTGESprostaglandin E synthase [Source:HGNC Symbol;Acc:HGNC:9599]51620.2400.7655No
40NAMPTP1nicotinamide phosphoribosyltransferase pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:17633]61370.0590.7397No
41MCTP1multiple C2 and transmembrane domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26183]80330.0000.6885No
42MCTP2multiple C2 and transmembrane domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25636]80470.0000.6882No
43POPDC3popeye domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17649]88220.0000.6673No
44SLC16A6P1SLC16A6 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:48932]104940.0000.6221No
45B3GNT5UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:15684]108280.0000.6131No
46SLC6A15solute carrier family 6 member 15 [Source:HGNC Symbol;Acc:HGNC:13621]119600.0000.5825No
47PTGFRprostaglandin F receptor [Source:HGNC Symbol;Acc:HGNC:9600]119760.0000.5821No
48MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]124430.0000.5695No
49IL33interleukin 33 [Source:HGNC Symbol;Acc:HGNC:16028]138810.0000.5307No
50HSD11B1hydroxysteroid 11-beta dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:5208]144770.0000.5146No
51EPB41L4Berythrocyte membrane protein band 4.1 like 4B [Source:HGNC Symbol;Acc:HGNC:19818]151540.0000.4964No
52G0S2G0/G1 switch 2 [Source:HGNC Symbol;Acc:HGNC:30229]158040.0000.4788No
53PRR7-AS1PRR7 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27961]171400.0000.4428No
54SRSF12serine and arginine rich splicing factor 12 [Source:HGNC Symbol;Acc:HGNC:21220]175720.0000.4311No
55MMP1matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155]191990.0000.3872No
56MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]192030.0000.3871No
57CXCL8C-X-C motif chemokine ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]195530.0000.3777No
58CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]195620.0000.3775No
59CXCL3C-X-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:4604]195640.0000.3774No
60CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]195650.0000.3774No
61CXCL5C-X-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642]195670.0000.3774No
62LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]208860.0000.3418No
63C2CD4BC2 calcium dependent domain containing 4B [Source:HGNC Symbol;Acc:HGNC:33628]218590.0000.3155No
64FGF2fibroblast growth factor 2 [Source:HGNC Symbol;Acc:HGNC:3676]227490.0000.2915No
65TESCtescalcin [Source:HGNC Symbol;Acc:HGNC:26065]252870.0000.2229No
66IFNEinterferon epsilon [Source:HGNC Symbol;Acc:HGNC:18163]256040.0000.2144No
67MMP10matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]257030.0000.2118No
68KYNUkynureninase [Source:HGNC Symbol;Acc:HGNC:6469]270900.0000.1743No
69TSLPthymic stromal lymphopoietin [Source:HGNC Symbol;Acc:HGNC:30743]271660.0000.1723No
70PHEXphosphate regulating endopeptidase homolog X-linked [Source:HGNC Symbol;Acc:HGNC:8918]275000.0000.1633No
71CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]282210.0000.1438No
72DNAJB4DnaJ heat shock protein family (Hsp40) member B4 [Source:HGNC Symbol;Acc:HGNC:14886]28708-0.0500.1311No
73RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]29190-0.1740.1197No
74STC1stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]29326-0.2030.1178No
75GPR68G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519]29743-0.3010.1093No
76NAMPTnicotinamide phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:30092]29898-0.3310.1081No
77TCIMtranscriptional and immune response regulator [Source:HGNC Symbol;Acc:HGNC:1357]30293-0.4310.1012No
78BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]30579-0.5070.0980No
79PLA2G4Aphospholipase A2 group IVA [Source:HGNC Symbol;Acc:HGNC:9035]31436-0.7440.0815No
80GADD45Ggrowth arrest and DNA damage inducible gamma [Source:HGNC Symbol;Acc:HGNC:4097]32339-1.0230.0662No
81CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]33602-1.4510.0450No
82RNF128ring finger protein 128 [Source:HGNC Symbol;Acc:HGNC:21153]34252-1.7440.0430No
83LRRC8Bleucine rich repeat containing 8 VRAC subunit B [Source:HGNC Symbol;Acc:HGNC:30692]36692-3.7910.0108No
Table: GSEA details [plain text format]



Fig 2: GHANDHI_BYSTANDER_IRRADIATION_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GHANDHI_BYSTANDER_IRRADIATION_UP: Random ES distribution   
Gene set null distribution of ES for GHANDHI_BYSTANDER_IRRADIATION_UP