Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetLEE_EARLY_T_LYMPHOCYTE_UP
Enrichment Score (ES)-0.7775256
Normalized Enrichment Score (NES)-1.6592484
Nominal p-value0.0
FDR q-value0.008634233
FWER p-Value0.137
Table: GSEA Results Summary



Fig 1: Enrichment plot: LEE_EARLY_T_LYMPHOCYTE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RAPGEF5Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]3483.3650.0105No
2SYKspleen associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11491]11311.9730.0010No
3PON1paraoxonase 1 [Source:HGNC Symbol;Acc:HGNC:9204]15681.655-0.0010No
4SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]19121.409-0.0019No
5CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]28370.990-0.0210No
6CENPWcentromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]29360.947-0.0181No
7CDC25Acell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]34930.738-0.0287No
8AEBP1AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]45910.409-0.0560No
9GSE1Gse1 coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:28979]56390.211-0.0830No
10GALNT7polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]57070.188-0.0837No
11FAIMFas apoptotic inhibitory molecule [Source:HGNC Symbol;Acc:HGNC:18703]57090.188-0.0827No
12MIR646HGMIR646 host gene [Source:HGNC Symbol;Acc:HGNC:27659]81340.000-0.1482No
13HHIPhedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]82130.000-0.1503No
14TNFRSF21TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469]93860.000-0.1820No
15CRNDEcolorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]115420.000-0.2403No
16RAG1recombination activating 1 [Source:HGNC Symbol;Acc:HGNC:9831]125350.000-0.2671No
17SCRN1secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]141580.000-0.3109No
18MZB1marginal zone B and B1 cell specific protein [Source:HGNC Symbol;Acc:HGNC:30125]147810.000-0.3278No
19PALLDpalladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]167100.000-0.3799No
20PALM2AKAP2PALM2 and AKAP2 fusion [Source:HGNC Symbol;Acc:HGNC:33529]180020.000-0.4148No
21MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]192710.000-0.4491No
22CPVLcarboxypeptidase vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]208910.000-0.4929No
23CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]212590.000-0.5028No
24NLGN4Xneuroligin 4 X-linked [Source:HGNC Symbol;Acc:HGNC:14287]228430.000-0.5456No
25ARPP21cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]259090.000-0.6285No
26TSHRthyroid stimulating hormone receptor [Source:HGNC Symbol;Acc:HGNC:12373]271290.000-0.6614No
27FAM72Cfamily with sequence similarity 72 member C [Source:HGNC Symbol;Acc:HGNC:30602]274290.000-0.6695No
28CD1ECD1e molecule [Source:HGNC Symbol;Acc:HGNC:1638]280920.000-0.6874No
29CD1BCD1b molecule [Source:HGNC Symbol;Acc:HGNC:1635]280950.000-0.6875No
30CD1ACD1a molecule [Source:HGNC Symbol;Acc:HGNC:1634]280960.000-0.6875No
31CD99CD99 molecule (Xg blood group) [Source:HGNC Symbol;Acc:HGNC:7082]282500.000-0.6916No
32GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]28872-0.092-0.7079No
33CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]28955-0.111-0.7094No
34GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]29843-0.318-0.7315No
35LETM1leucine zipper and EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:6556]29867-0.323-0.7302No
36PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]30002-0.356-0.7317No
37OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]31183-0.669-0.7597No
38TUBB4Btubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771]31219-0.678-0.7566No
39NSD2nuclear receptor binding SET domain protein 2 [Source:HGNC Symbol;Acc:HGNC:12766]31422-0.738-0.7577No
40GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]31667-0.790-0.7596No
41TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32001-0.913-0.7632No
42CENPUcentromere protein U [Source:HGNC Symbol;Acc:HGNC:21348]32530-1.094-0.7711Yes
43RUFY3RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30285]32652-1.133-0.7676Yes
44KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]32716-1.154-0.7625Yes
45TMSB15Athymosin beta 15a [Source:HGNC Symbol;Acc:HGNC:30744]32914-1.227-0.7606Yes
46KNL1kinetochore scaffold 1 [Source:HGNC Symbol;Acc:HGNC:24054]32938-1.234-0.7539Yes
47RCAN1regulator of calcineurin 1 [Source:HGNC Symbol;Acc:HGNC:3040]33051-1.276-0.7493Yes
48AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]33083-1.285-0.7426Yes
49DNTTDNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]33154-1.312-0.7367Yes
50CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]33194-1.331-0.7299Yes
51CEP70centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]33203-1.334-0.7222Yes
52FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]33326-1.384-0.7173Yes
53ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]33402-1.423-0.7109Yes
54MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]33442-1.442-0.7034Yes
55RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]33676-1.467-0.7011Yes
56NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]33966-1.594-0.6994Yes
57CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]33991-1.612-0.6906Yes
58KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]34182-1.707-0.6856Yes
59KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]34210-1.718-0.6761Yes
60UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]34312-1.770-0.6684Yes
61MPP1membrane palmitoylated protein 1 [Source:HGNC Symbol;Acc:HGNC:7219]34321-1.778-0.6581Yes
62DIAPH3diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]34428-1.819-0.6502Yes
63MCM10minichromosome maintenance 10 replication initiation factor [Source:HGNC Symbol;Acc:HGNC:18043]34445-1.828-0.6398Yes
64BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]34488-1.854-0.6300Yes
65GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]34533-1.882-0.6200Yes
66PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]34591-1.917-0.6102Yes
67TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]34662-1.944-0.6006Yes
68HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]34669-1.947-0.5893Yes
69KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]34689-1.957-0.5782Yes
70KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]34739-1.998-0.5677Yes
71PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]34782-2.033-0.5568Yes
72NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]34879-2.099-0.5470Yes
73CEP128centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]34962-2.147-0.5365Yes
74NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]34966-2.148-0.5238Yes
75PRR11proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]35002-2.171-0.5119Yes
76ATAD2ATPase family AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]35076-2.228-0.5007Yes
77NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]35078-2.229-0.4876Yes
78TUBBtubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]35090-2.241-0.4746Yes
79TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]35185-2.308-0.4635Yes
80PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]35306-2.318-0.4530Yes
81MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]35444-2.426-0.4423Yes
82UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]35503-2.478-0.4293Yes
83MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]35567-2.531-0.4160Yes
84BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]35570-2.532-0.4010Yes
85CXXC5CXXC finger protein 5 [Source:HGNC Symbol;Acc:HGNC:26943]35572-2.539-0.3860Yes
86DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35576-2.541-0.3711Yes
87CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]35581-2.547-0.3561Yes
88HMGB3high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]35593-2.558-0.3413Yes
89CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]35611-2.573-0.3265Yes
90LRR1leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]35641-2.601-0.3119Yes
91MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]35643-2.607-0.2965Yes
92ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]35708-2.647-0.2826Yes
93CDCA2cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]35809-2.746-0.2690Yes
94NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]35837-2.768-0.2534Yes
95CEP55centrosomal protein 55 [Source:HGNC Symbol;Acc:HGNC:1161]35865-2.794-0.2376Yes
96SGO2shugoshin 2 [Source:HGNC Symbol;Acc:HGNC:30812]35873-2.813-0.2211Yes
97KIF15kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]35946-2.862-0.2061Yes
98LDLRAD4low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1224]36016-2.943-0.1905Yes
99UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]36104-3.045-0.1749Yes
100BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36198-3.169-0.1586Yes
101E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36290-3.231-0.1420Yes
102DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]36367-3.347-0.1242Yes
103E2F2E2F transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3114]36398-3.383-0.1050Yes
104RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]36693-3.791-0.0905Yes
105NEIL3nei like DNA glycosylase 3 [Source:HGNC Symbol;Acc:HGNC:24573]36775-3.954-0.0693Yes
106TFDP2transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]36888-4.209-0.0474Yes
107E2F7E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]36907-4.260-0.0227Yes
108DSCC1DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]37029-4.6680.0016Yes
Table: GSEA details [plain text format]



Fig 2: LEE_EARLY_T_LYMPHOCYTE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: LEE_EARLY_T_LYMPHOCYTE_UP: Random ES distribution   
Gene set null distribution of ES for LEE_EARLY_T_LYMPHOCYTE_UP