Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetNEMETH_INFLAMMATORY_RESPONSE_LPS_UP
Enrichment Score (ES)0.88883746
Normalized Enrichment Score (NES)2.154985
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1RNinterleukin 1 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:6000]124.9750.0258Yes
2PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]184.9240.0516Yes
3TNFRSF1BTNF receptor superfamily member 1B [Source:HGNC Symbol;Acc:HGNC:11917]464.7430.0758Yes
4BCL6BBCL6B transcription repressor [Source:HGNC Symbol;Acc:HGNC:1002]704.5900.0993Yes
5ODC1ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:8109]764.5220.1230Yes
6CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]914.4470.1460Yes
7FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1144.2970.1680Yes
8TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]1284.2320.1899Yes
9C3AR1complement C3a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1319]1314.2030.2119Yes
10SLC11A1solute carrier family 11 member 1 [Source:HGNC Symbol;Acc:HGNC:10907]1454.1550.2334Yes
11SLFN12schlafen family member 12 [Source:HGNC Symbol;Acc:HGNC:25500]1554.1150.2548Yes
12BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]1634.0780.2761Yes
13GKglycerol kinase [Source:HGNC Symbol;Acc:HGNC:4289]2333.7550.2939Yes
14NFKB1nuclear factor kappa B subunit 1 [Source:HGNC Symbol;Acc:HGNC:7794]2583.6730.3126Yes
15IL1RL1interleukin 1 receptor like 1 [Source:HGNC Symbol;Acc:HGNC:5998]2673.6180.3314Yes
16TNIP1TNFAIP3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16903]2733.5950.3502Yes
17IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]3373.4350.3665Yes
18SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]3383.4340.3846Yes
19SLFN12Lschlafen family member 12 like [Source:HGNC Symbol;Acc:HGNC:33920]3393.4240.4026Yes
20RGS16regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]3463.3940.4203Yes
21GLRXglutaredoxin [Source:HGNC Symbol;Acc:HGNC:4330]3473.3700.4380Yes
22HCKHCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:4840]3503.3510.4556Yes
23MARCKSL1MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]3533.3500.4731Yes
24CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]3563.3390.4907Yes
25NFKBIANFKB inhibitor alpha [Source:HGNC Symbol;Acc:HGNC:7797]3573.3330.5082Yes
26RHOCras homolog family member C [Source:HGNC Symbol;Acc:HGNC:669]3633.3150.5255Yes
27GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]3903.2370.5418Yes
28IRGMimmunity related GTPase M [Source:HGNC Symbol;Acc:HGNC:29597]4673.0140.5556Yes
29TXNRD1thioredoxin reductase 1 [Source:HGNC Symbol;Acc:HGNC:12437]5372.8550.5687Yes
30MSR1macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]5572.8110.5830Yes
31STK10serine/threonine kinase 10 [Source:HGNC Symbol;Acc:HGNC:11388]5582.8080.5978Yes
32STAT1signal transducer and activator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:11362]5762.7710.6119Yes
33PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]5952.7080.6256Yes
34ETS2ETS proto-oncogene 2, transcription factor [Source:HGNC Symbol;Acc:HGNC:3489]6802.6370.6372Yes
35CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]7152.5840.6499Yes
36SRGNserglycin [Source:HGNC Symbol;Acc:HGNC:9361]7292.5590.6630Yes
37MYO10myosin X [Source:HGNC Symbol;Acc:HGNC:7593]7412.5380.6761Yes
38IFRD1interferon related developmental regulator 1 [Source:HGNC Symbol;Acc:HGNC:5456]8122.3950.6868Yes
39CLEC4DC-type lectin domain family 4 member D [Source:HGNC Symbol;Acc:HGNC:14554]8332.3600.6986Yes
40TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]8362.3540.7110Yes
41ACSL4acyl-CoA synthetase long chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]9072.2780.7210Yes
42APBB1IPamyloid beta precursor protein binding family B member 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:17379]9552.2070.7314Yes
43LCP2lymphocyte cytosolic protein 2 [Source:HGNC Symbol;Acc:HGNC:6529]9562.2050.7430Yes
44ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]9932.1640.7534Yes
45TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]10302.1100.7635Yes
46DEGS1delta 4-desaturase, sphingolipid 1 [Source:HGNC Symbol;Acc:HGNC:13709]10332.1080.7745Yes
47IER2immediate early response 2 [Source:HGNC Symbol;Acc:HGNC:28871]10762.0540.7842Yes
48ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]11032.0150.7941Yes
49ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]11591.9490.8029Yes
50CLN3CLN3 lysosomal/endosomal transmembrane protein, battenin [Source:HGNC Symbol;Acc:HGNC:2074]11701.9330.8128Yes
51PMLpromyelocytic leukemia [Source:HGNC Symbol;Acc:HGNC:9113]12091.8850.8216Yes
52SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]13771.8390.8268Yes
53RNF11ring finger protein 11 [Source:HGNC Symbol;Acc:HGNC:10056]13841.8250.8362Yes
54TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]14391.7530.8440Yes
55JUNDJunD proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6206]14591.7360.8526Yes
56HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]14831.7170.8610Yes
57DAB2DAB adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:2662]17041.5530.8632Yes
58CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]17741.5060.8693Yes
59EIF1eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:HGNC:3249]19251.3950.8726Yes
60SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]20511.3180.8761Yes
61WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]20611.3140.8828Yes
62HMGCR3-hydroxy-3-methylglutaryl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:5006]22061.2340.8854Yes
63TOP1DNA topoisomerase I [Source:HGNC Symbol;Acc:HGNC:11986]23161.2150.8888Yes
64MYADMmyeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]27921.0090.8813No
65SLC2A1solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]28410.9890.8852No
66MLLT11MLLT11 transcription factor 7 cofactor [Source:HGNC Symbol;Acc:HGNC:16997]30560.9020.8842No
67TPST1tyrosylprotein sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:12020]39930.5810.8619No
68MAP2K1mitogen-activated protein kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:6840]41170.5440.8615No
69FCGR2BFc fragment of IgG receptor IIb [Source:HGNC Symbol;Acc:HGNC:3618]57250.1840.8190No
70CCL23C-C motif chemokine ligand 23 [Source:HGNC Symbol;Acc:HGNC:10622]64230.0000.8002No
71TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]89700.0000.7314No
72IFI16interferon gamma inducible protein 16 [Source:HGNC Symbol;Acc:HGNC:5395]115890.0000.6606No
73MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]124430.0000.6376No
74LILRB4leukocyte immunoglobulin like receptor B4 [Source:HGNC Symbol;Acc:HGNC:6608]134800.0000.6096No
75SLPIsecretory leukocyte peptidase inhibitor [Source:HGNC Symbol;Acc:HGNC:11092]224890.0000.3662No
76CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]242160.0000.3195No
77CCL3C-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:10627]280370.0000.2163No
78RCN1reticulocalbin 1 [Source:HGNC Symbol;Acc:HGNC:9934]29771-0.3060.1711No
79PRKCDprotein kinase C delta [Source:HGNC Symbol;Acc:HGNC:9399]30258-0.4200.1602No
80KPNA3karyopherin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6396]30268-0.4240.1621No
81MAPKAPK2MAPK activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]30571-0.5040.1566No
82SAP30Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]30580-0.5070.1591No
83PIP5K1Bphosphatidylinositol-4-phosphate 5-kinase type 1 beta [Source:HGNC Symbol;Acc:HGNC:8995]30885-0.5880.1540No
84CITED2Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 [Source:HGNC Symbol;Acc:HGNC:1987]31271-0.6940.1472No
85LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]34570-1.9050.0681No
Table: GSEA details [plain text format]



Fig 2: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP: Random ES distribution   
Gene set null distribution of ES for NEMETH_INFLAMMATORY_RESPONSE_LPS_UP