Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.45199236
Normalized Enrichment Score (NES)1.2000749
Nominal p-value0.04255319
FDR q-value0.17672661
FWER p-Value0.747
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]414.7870.0211Yes
2SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]474.7350.0429Yes
3ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]854.4830.0626Yes
4CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]914.4470.0831Yes
5BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]1114.3140.1025Yes
6ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1194.2610.1221Yes
7MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]1254.2430.1416Yes
8EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]1274.2340.1612Yes
9SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1734.0080.1785Yes
10JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]2603.6420.1931Yes
11TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]2813.5670.2091Yes
12ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]4503.1130.2189Yes
13PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]4912.9540.2315Yes
14STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]6882.6220.2384Yes
15RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]7002.6070.2501Yes
16RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]8752.3290.2562Yes
17LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]9362.2320.2649Yes
18EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]9422.2230.2751Yes
19ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]9952.1630.2837Yes
20BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]10692.0600.2913Yes
21KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]10982.0220.2999Yes
22TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]11022.0160.3091Yes
23LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]11171.9920.3180Yes
24NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]11231.9850.3270Yes
25MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]13561.8660.3294Yes
26TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]13731.8430.3375Yes
27GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]15521.6640.3404Yes
28NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]15891.6360.3470Yes
29CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]17301.5350.3503Yes
30B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]17721.5060.3562Yes
31GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]17941.4910.3625Yes
32BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]17981.4880.3693Yes
33UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]17991.4870.3762Yes
34UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]18031.4830.3830Yes
35APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]18151.4720.3895Yes
36DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]18361.4710.3958Yes
37TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]18641.4520.4018Yes
38C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]19581.3780.4056Yes
39WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]20611.3140.4089Yes
40ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]20801.3040.4145Yes
41PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]21631.2560.4181Yes
42ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]23721.1800.4179Yes
43FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]24261.1580.4219Yes
44SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]25731.0980.4230Yes
45LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]27191.0420.4239Yes
46TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]27301.0370.4284Yes
47TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]27421.0280.4329Yes
48MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]31180.8740.4268Yes
49ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]32160.8380.4280Yes
50PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]32960.8010.4296Yes
51PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]33150.7940.4328Yes
52DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]34200.7660.4335Yes
53USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]34270.7630.4369Yes
54ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]35470.7180.4370Yes
55FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]35510.7160.4402Yes
56LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]36250.6970.4415Yes
57EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]36340.6930.4445Yes
58DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]37570.6560.4442Yes
59ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]38320.6290.4451Yes
60NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]38880.6100.4464Yes
61UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]39390.5950.4478Yes
62RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]39730.5870.4497Yes
63GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]39880.5830.4520Yes
64EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]41790.5250.4493No
65DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]41950.5190.4513No
66MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]42690.4980.4516No
67TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]45220.4250.4467No
68SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]45370.4210.4483No
69HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]45390.4200.4502No
70SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]45930.4080.4507No
71BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]47000.3740.4495No
72STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]47660.3540.4494No
73BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]48540.3270.4486No
74MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]49330.3080.4479No
75GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]50090.2850.4472No
76BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]50770.2640.4466No
77NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]56730.1980.4314No
78MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]57120.1870.4312No
79SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]57470.1740.4311No
80SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]58970.1310.4277No
81ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]62940.0140.4170No
82UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]63280.0070.4162No
83ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]66800.0000.4067No
84FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]69560.0000.3992No
85TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]87250.0000.3513No
86DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]92740.0000.3365No
87ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]97620.0000.3233No
88NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]99040.0000.3195No
89CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]110450.0000.2886No
90ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]115840.0000.2740No
91IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]118950.0000.2656No
92PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]121150.0000.2597No
93TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]125330.0000.2484No
94GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]128340.0000.2403No
95GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]129620.0000.2368No
96ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]133070.0000.2275No
97TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]135130.0000.2220No
98SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]137510.0000.2155No
99TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]138550.0000.2128No
100TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]143220.0000.2001No
101SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]159290.0000.1566No
102FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]170060.0000.1275No
103RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]170080.0000.1275No
104VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]173710.0000.1176No
105PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]176890.0000.1091No
106DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]185520.0000.0857No
107BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]191690.0000.0690No
108CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]201380.0000.0428No
109FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]207890.0000.0252No
110LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]208790.0000.0228No
111LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]211330.0000.0159No
112C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]224820.000-0.0206No
113ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]233060.000-0.0429No
114GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]242250.000-0.0677No
115AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]247300.000-0.0814No
116RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]251100.000-0.0917No
117INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]251240.000-0.0920No
118TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]252830.000-0.0963No
119KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]254330.000-0.1003No
120SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]263870.000-0.1261No
121C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]269580.000-0.1416No
122CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]280720.000-0.1717No
123LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]28944-0.109-0.1948No
124RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]29190-0.174-0.2006No
125ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]29234-0.181-0.2010No
126RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]29288-0.195-0.2015No
127NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]29907-0.333-0.2167No
128DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]29949-0.342-0.2162No
129GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]29990-0.352-0.2157No
130VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]29999-0.354-0.2143No
131FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]30098-0.380-0.2152No
132FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]30169-0.402-0.2152No
133RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]31262-0.692-0.2416No
134CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]31672-0.792-0.2490No
135TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]31687-0.797-0.2457No
136ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]31929-0.889-0.2481No
137MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]32065-0.928-0.2474No
138MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]32664-1.137-0.2584No
139KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]32706-1.148-0.2542No
140TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]32956-1.242-0.2551No
141PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]33027-1.265-0.2512No
142ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]33179-1.324-0.2491No
143SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]33200-1.332-0.2435No
144NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]33332-1.387-0.2406No
145MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]33386-1.415-0.2355No
146REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]33675-1.466-0.2365No
147ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]33784-1.512-0.2324No
148ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]33818-1.526-0.2263No
149DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]34100-1.666-0.2262No
150HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]34109-1.666-0.2187No
151RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]34153-1.690-0.2120No
152DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]34416-1.814-0.2107No
153MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]34491-1.854-0.2041No
154ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]34527-1.879-0.1964No
155LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]34570-1.905-0.1887No
156MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]34800-2.050-0.1854No
157EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]35096-2.242-0.1830No
158VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]35143-2.278-0.1737No
159RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]35271-2.316-0.1664No
160AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]35336-2.334-0.1573No
161CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]35564-2.528-0.1518No
162ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]35771-2.704-0.1448No
163QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]35978-2.903-0.1370No
164PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]36008-2.935-0.1242No
165CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]36029-2.960-0.1110No
166TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36145-3.094-0.0998No
167H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]36260-3.196-0.0881No
168TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36628-3.689-0.0809No
169KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]36715-3.843-0.0654No
170CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]36781-3.962-0.0488No
171TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]36802-4.009-0.0308No
172REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]36822-4.030-0.0127No
173RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]36924-4.2980.0045No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN