Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.3725281
Normalized Enrichment Score (NES)0.98879987
Nominal p-value0.460177
FDR q-value0.5703136
FWER p-Value0.963
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]34.9960.0228Yes
2IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]434.7840.0436Yes
3ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]864.4790.0629Yes
4GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]1224.2500.0814Yes
5TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]1234.2450.1008Yes
6TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]1284.2320.1200Yes
7GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]1414.1570.1387Yes
8BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]1634.0780.1568Yes
9IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]3373.4350.1678Yes
10SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]3383.4340.1835Yes
11CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]3563.3390.1983Yes
12GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]3903.2370.2122Yes
13SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]4023.1970.2265Yes
14SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]4972.9450.2374Yes
15CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]7152.5840.2434Yes
16MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]7792.4570.2529Yes
17EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]8072.4030.2631Yes
18CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]8452.3510.2729Yes
19BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]9022.2870.2818Yes
20PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]9042.2830.2922Yes
21ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]9932.1640.2997Yes
22CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]10962.0230.3062Yes
23ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]11032.0150.3153Yes
24FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]13201.8760.3180Yes
25SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]13771.8390.3249Yes
26TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]14391.7530.3312Yes
27LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]14521.7430.3389Yes
28CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]14981.7110.3455Yes
29BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]15071.7050.3531Yes
30CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]17741.5060.3527Yes
31CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]19801.3700.3535Yes
32SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]20511.3180.3576Yes
33ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]20801.3040.3628Yes
34HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]20961.2970.3683Yes
35DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]23891.1730.3658Yes
36IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]25271.1170.3672Yes
37TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]27221.0410.3667Yes
38XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]28151.0000.3687Yes
39ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]30260.9140.3672Yes
40NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]30890.8860.3696Yes
41HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]33130.7960.3672Yes
42JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]33200.7930.3707Yes
43CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]33840.7810.3725Yes
44CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]36880.6800.3674No
45PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]36990.6760.3703No
46ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]37380.6600.3722No
47DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]39370.5950.3696No
48BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]40710.5590.3686No
49TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]41870.5230.3678No
50ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]43600.4740.3653No
51TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]45220.4250.3629No
52PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]46780.3800.3605No
53DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]48290.3380.3579No
54DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]48970.3180.3576No
55MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]56050.2220.3395No
56PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]57050.1880.3376No
57LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]59210.1240.3324No
58DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]60380.0870.3296No
59APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]63360.0050.3216No
60BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]74370.0000.2918No
61CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]76400.0000.2864No
62PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]77310.0000.2839No
63GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]84990.0000.2632No
64FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]92910.0000.2417No
65GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]95180.0000.2356No
66NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]97250.0000.2300No
67PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]99650.0000.2236No
68PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]116080.0000.1791No
69EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]116170.0000.1789No
70IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]119070.0000.1711No
71ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]121390.0000.1648No
72TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]124460.0000.1565No
73IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]138410.0000.1188No
74BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]155290.0000.0731No
75BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]155390.0000.0728No
76CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]157340.0000.0676No
77DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]160220.0000.0598No
78F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]161500.0000.0564No
79F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]165070.0000.0467No
80AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]166520.0000.0428No
81TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]171760.0000.0287No
82IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]177750.0000.0125No
83DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]181890.0000.0013No
84LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]188420.000-0.0163No
85AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]200520.000-0.0491No
86IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]219190.000-0.0996No
87PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]230190.000-0.1294No
88CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]242160.000-0.1618No
89FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]250340.000-0.1839No
90IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]252840.000-0.1906No
91SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]265660.000-0.2253No
92KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]270320.000-0.2379No
93CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]281370.000-0.2678No
94CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]282210.000-0.2700No
95TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]285140.000-0.2779No
96VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]28561-0.010-0.2791No
97EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]28607-0.024-0.2803No
98SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]29201-0.176-0.2955No
99RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]29288-0.195-0.2969No
100PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]29552-0.252-0.3029No
101GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]29843-0.318-0.3093No
102DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]29976-0.347-0.3113No
103GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]30000-0.355-0.3103No
104PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]30141-0.392-0.3123No
105BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]30366-0.452-0.3163No
106BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]30579-0.507-0.3197No
107PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]30761-0.556-0.3221No
108RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]30767-0.558-0.3197No
109MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]31303-0.704-0.3309No
110SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]31401-0.732-0.3302No
111ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]31805-0.841-0.3373No
112PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]31973-0.904-0.3377No
113IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]32162-0.967-0.3383No
114DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]32429-1.054-0.3407No
115BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]32487-1.077-0.3374No
116RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]32564-1.106-0.3344No
117RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]32653-1.134-0.3316No
118CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]32657-1.134-0.3265No
119BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]32746-1.163-0.3235No
120DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]32807-1.185-0.3197No
121HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]32901-1.221-0.3167No
122PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]32995-1.256-0.3134No
123CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]33129-1.302-0.3111No
124CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]33247-1.356-0.3081No
125IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]33385-1.413-0.3053No
126CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]33639-1.453-0.3055No
127BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]33765-1.500-0.3021No
128FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]33816-1.525-0.2964No
129CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]33852-1.538-0.2903No
130HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]34037-1.636-0.2879No
131TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]34044-1.641-0.2805No
132LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]34060-1.646-0.2734No
133SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]34067-1.648-0.2660No
134RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]34084-1.659-0.2589No
135CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]34096-1.664-0.2516No
136EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]34230-1.732-0.2472No
137CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]34349-1.786-0.2423No
138CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34425-1.818-0.2360No
139CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]34451-1.832-0.2283No
140CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]34482-1.849-0.2207No
141TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]34662-1.944-0.2166No
142PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]34732-1.993-0.2094No
143GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]34791-2.046-0.2016No
144RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]35038-2.200-0.1982No
145CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]35125-2.268-0.1902No
146ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]35381-2.379-0.1862No
147TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35449-2.436-0.1769No
148WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]35705-2.646-0.1717No
149GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]35954-2.875-0.1653No
150GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]36093-3.026-0.1552No
151BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36149-3.098-0.1425No
152H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36285-3.223-0.1314No
153CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36311-3.256-0.1172No
154BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]36439-3.439-0.1049No
155MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]36502-3.493-0.0906No
156BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36518-3.520-0.0750No
157BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]36562-3.591-0.0597No
158BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36568-3.599-0.0434No
159GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36720-3.854-0.0299No
160CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]36816-4.018-0.0141No
161PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]37037-4.6980.0014No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS