Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetHALLMARK_BILE_ACID_METABOLISM
Enrichment Score (ES)-0.6807006
Normalized Enrichment Score (NES)-1.4466957
Nominal p-value0.004672897
FDR q-value0.049703952
FWER p-Value0.13
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_BILE_ACID_METABOLISM   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ABCA1ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]1484.1350.0252No
2ATXN1ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]3133.4870.0454No
3AQP9aquaporin 9 [Source:HGNC Symbol;Acc:HGNC:643]5212.8870.0602No
4HAO1hydroxyacid oxidase 1 [Source:HGNC Symbol;Acc:HGNC:4809]6982.6070.0739No
5BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]9532.2120.0826No
6GCLMglutamate-cysteine ligase modifier subunit [Source:HGNC Symbol;Acc:HGNC:4312]13591.8620.0848No
7PRDX5peroxiredoxin 5 [Source:HGNC Symbol;Acc:HGNC:9355]17481.5210.0851No
8PEX12peroxisomal biogenesis factor 12 [Source:HGNC Symbol;Acc:HGNC:8854]22581.2270.0800No
9TFCP2L1transcription factor CP2 like 1 [Source:HGNC Symbol;Acc:HGNC:17925]22961.2250.0877No
10APOA1apolipoprotein A1 [Source:HGNC Symbol;Acc:HGNC:600]29080.9550.0779No
11CH25Hcholesterol 25-hydroxylase [Source:HGNC Symbol;Acc:HGNC:1907]29730.9390.0828No
12LCKLCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:6524]36840.6810.0684No
13IDI1isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:HGNC:5387]42570.5000.0565No
14PEX11Aperoxisomal biogenesis factor 11 alpha [Source:HGNC Symbol;Acc:HGNC:8852]48070.3430.0440No
15PECRperoxisomal trans-2-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:18281]53710.2390.0305No
16SOAT2sterol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:11178]55400.2390.0276No
17PEX19peroxisomal biogenesis factor 19 [Source:HGNC Symbol;Acc:HGNC:9713]57540.1730.0231No
18EPHX2epoxide hydrolase 2 [Source:HGNC Symbol;Acc:HGNC:3402]80250.000-0.0383No
19ALDH8A1aldehyde dehydrogenase 8 family member A1 [Source:HGNC Symbol;Acc:HGNC:15471]87360.000-0.0575No
20GSTK1glutathione S-transferase kappa 1 [Source:HGNC Symbol;Acc:HGNC:16906]96900.000-0.0833No
21SLC23A1solute carrier family 23 member 1 [Source:HGNC Symbol;Acc:HGNC:10974]98920.000-0.0887No
22NEDD4NEDD4 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:7727]105410.000-0.1062No
23SLC27A2solute carrier family 27 member 2 [Source:HGNC Symbol;Acc:HGNC:10996]110010.000-0.1186No
24SLC27A5solute carrier family 27 member 5 [Source:HGNC Symbol;Acc:HGNC:10999]110020.000-0.1186No
25AKR1D1aldo-keto reductase family 1 member D1 [Source:HGNC Symbol;Acc:HGNC:388]116600.000-0.1364No
26AGXTalanine--glyoxylate and serine--pyruvate aminotransferase [Source:HGNC Symbol;Acc:HGNC:341]122990.000-0.1536No
27CYP39A1cytochrome P450 family 39 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:17449]124540.000-0.1578No
28HSD3B1hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:HGNC Symbol;Acc:HGNC:5217]125920.000-0.1615No
29TTRtransthyretin [Source:HGNC Symbol;Acc:HGNC:12405]127160.000-0.1648No
30RBP1retinol binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9919]128780.000-0.1692No
31DIO1iodothyronine deiodinase 1 [Source:HGNC Symbol;Acc:HGNC:2883]158150.000-0.2486No
32DIO2iodothyronine deiodinase 2 [Source:HGNC Symbol;Acc:HGNC:2884]158160.000-0.2486No
33GCGC vitamin D binding protein [Source:HGNC Symbol;Acc:HGNC:4187]161760.000-0.2583No
34SERPINA6serpin family A member 6 [Source:HGNC Symbol;Acc:HGNC:1540]178540.000-0.3036No
35OPTNoptineurin [Source:HGNC Symbol;Acc:HGNC:17142]181030.000-0.3104No
36BMP6bone morphogenetic protein 6 [Source:HGNC Symbol;Acc:HGNC:1073]191660.000-0.3391No
37HSD17B6hydroxysteroid 17-beta dehydrogenase 6 [Source:HGNC Symbol;Acc:HGNC:23316]198850.000-0.3585No
38NR1I2nuclear receptor subfamily 1 group I member 2 [Source:HGNC Symbol;Acc:HGNC:7968]200720.000-0.3635No
39NR1H4nuclear receptor subfamily 1 group H member 4 [Source:HGNC Symbol;Acc:HGNC:7967]200980.000-0.3642No
40SULT2B1sulfotransferase family 2B member 1 [Source:HGNC Symbol;Acc:HGNC:11459]209000.000-0.3859No
41SULT1B1sulfotransferase family 1B member 1 [Source:HGNC Symbol;Acc:HGNC:17845]212140.000-0.3943No
42PIPOXpipecolic acid and sarcosine oxidase [Source:HGNC Symbol;Acc:HGNC:17804]221400.000-0.4193No
43ALDH1A1aldehyde dehydrogenase 1 family member A1 [Source:HGNC Symbol;Acc:HGNC:402]230420.000-0.4437No
44CYP46A1cytochrome P450 family 46 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2641]232940.000-0.4505No
45ABCA6ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]242620.000-0.4766No
46ABCA4ATP binding cassette subfamily A member 4 [Source:HGNC Symbol;Acc:HGNC:34]242650.000-0.4767No
47ABCA9ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]242660.000-0.4767No
48ABCA8ATP binding cassette subfamily A member 8 [Source:HGNC Symbol;Acc:HGNC:38]242670.000-0.4767No
49SLCO1A2solute carrier organic anion transporter family member 1A2 [Source:HGNC Symbol;Acc:HGNC:10956]243160.000-0.4780No
50KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]254330.000-0.5082No
51BBOX1gamma-butyrobetaine hydroxylase 1 [Source:HGNC Symbol;Acc:HGNC:964]257220.000-0.5160No
52CYP8B1cytochrome P450 family 8 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2653]257880.000-0.5177No
53CYP7B1cytochrome P450 family 7 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2652]261170.000-0.5266No
54CYP7A1cytochrome P450 family 7 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2651]261400.000-0.5272No
55GNMTglycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]275610.000-0.5656No
56ABCG8ATP binding cassette subfamily G member 8 [Source:HGNC Symbol;Acc:HGNC:13887]284730.000-0.5902No
57LIPElipase E, hormone sensitive type [Source:HGNC Symbol;Acc:HGNC:6621]28688-0.044-0.5957No
58PEX13peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:HGNC:8855]28893-0.095-0.6005No
59SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]29201-0.176-0.6076No
60PNPLA8patatin like phospholipase domain containing 8 [Source:HGNC Symbol;Acc:HGNC:28900]29423-0.221-0.6120No
61ARandrogen receptor [Source:HGNC Symbol;Acc:HGNC:644]29880-0.328-0.6220No
62PEX6peroxisomal biogenesis factor 6 [Source:HGNC Symbol;Acc:HGNC:8859]30314-0.436-0.6306No
63ISOC1isochorismatase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24254]30351-0.448-0.6285No
64RXRGretinoid X receptor gamma [Source:HGNC Symbol;Acc:HGNC:10479]30479-0.479-0.6285No
65PHYHphytanoyl-CoA 2-hydroxylase [Source:HGNC Symbol;Acc:HGNC:8940]32410-1.048-0.6733Yes
66PEX7peroxisomal biogenesis factor 7 [Source:HGNC Symbol;Acc:HGNC:8860]32516-1.090-0.6684Yes
67SLC23A2solute carrier family 23 member 2 [Source:HGNC Symbol;Acc:HGNC:10973]32756-1.167-0.6667Yes
68ACSL5acyl-CoA synthetase long chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]32809-1.185-0.6597Yes
69NR0B2nuclear receptor subfamily 0 group B member 2 [Source:HGNC Symbol;Acc:HGNC:7961]32935-1.234-0.6543Yes
70HSD17B11hydroxysteroid 17-beta dehydrogenase 11 [Source:HGNC Symbol;Acc:HGNC:22960]33434-1.438-0.6577Yes
71AMACRalpha-methylacyl-CoA racemase [Source:HGNC Symbol;Acc:HGNC:451]33438-1.440-0.6476Yes
72LONP2lon peptidase 2, peroxisomal [Source:HGNC Symbol;Acc:HGNC:20598]33655-1.459-0.6431Yes
73FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]33816-1.525-0.6366Yes
74PEX16peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:HGNC:8857]34011-1.623-0.6304Yes
75NPC1NPC intracellular cholesterol transporter 1 [Source:HGNC Symbol;Acc:HGNC:7897]34065-1.648-0.6202Yes
76RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]34084-1.659-0.6090Yes
77PXMP2peroxisomal membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:9716]34127-1.674-0.5983Yes
78ABCD3ATP binding cassette subfamily D member 3 [Source:HGNC Symbol;Acc:HGNC:67]34258-1.746-0.5895Yes
79PEX11Gperoxisomal biogenesis factor 11 gamma [Source:HGNC Symbol;Acc:HGNC:20208]34306-1.765-0.5783Yes
80RXRAretinoid X receptor alpha [Source:HGNC Symbol;Acc:HGNC:10477]34454-1.834-0.5693Yes
81MLYCDmalonyl-CoA decarboxylase [Source:HGNC Symbol;Acc:HGNC:7150]34614-1.931-0.5599Yes
82SLC22A18solute carrier family 22 member 18 [Source:HGNC Symbol;Acc:HGNC:10964]34716-1.979-0.5487Yes
83NR3C2nuclear receptor subfamily 3 group C member 2 [Source:HGNC Symbol;Acc:HGNC:7979]34748-2.002-0.5354Yes
84PEX1peroxisomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8850]34920-2.126-0.5250Yes
85GNPATglyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:HGNC:4416]34950-2.142-0.5106Yes
86ABCA5ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]34970-2.150-0.4960Yes
87NUDT12nudix hydrolase 12 [Source:HGNC Symbol;Acc:HGNC:18826]34996-2.167-0.4813Yes
88CATcatalase [Source:HGNC Symbol;Acc:HGNC:1516]35041-2.202-0.4670Yes
89SCP2sterol carrier protein 2 [Source:HGNC Symbol;Acc:HGNC:10606]35337-2.336-0.4584Yes
90ACSL1acyl-CoA synthetase long chain family member 1 [Source:HGNC Symbol;Acc:HGNC:3569]35348-2.344-0.4421Yes
91ABCA3ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]35361-2.356-0.4258Yes
92ALDH9A1aldehyde dehydrogenase 9 family member A1 [Source:HGNC Symbol;Acc:HGNC:412]35485-2.466-0.4117Yes
93SLC35B2solute carrier family 35 member B2 [Source:HGNC Symbol;Acc:HGNC:16872]35489-2.468-0.3944Yes
94IDH2isocitrate dehydrogenase (NADP(+)) 2 [Source:HGNC Symbol;Acc:HGNC:5383]35532-2.509-0.3778Yes
95PEX26peroxisomal biogenesis factor 26 [Source:HGNC Symbol;Acc:HGNC:22965]35662-2.608-0.3628Yes
96EFHC1EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16406]35676-2.615-0.3447Yes
97HSD17B4hydroxysteroid 17-beta dehydrogenase 4 [Source:HGNC Symbol;Acc:HGNC:5213]35691-2.624-0.3265Yes
98FADS2fatty acid desaturase 2 [Source:HGNC Symbol;Acc:HGNC:3575]35715-2.654-0.3084Yes
99FADS1fatty acid desaturase 1 [Source:HGNC Symbol;Acc:HGNC:3574]35774-2.709-0.2909Yes
100HSD3B7hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 [Source:HGNC Symbol;Acc:HGNC:18324]35892-2.842-0.2739Yes
101SLC29A1solute carrier family 29 member 1 (Augustine blood group) [Source:HGNC Symbol;Acc:HGNC:11003]35972-2.894-0.2556Yes
102ABCD1ATP binding cassette subfamily D member 1 [Source:HGNC Symbol;Acc:HGNC:61]36067-2.991-0.2370Yes
103DHCR2424-dehydrocholesterol reductase [Source:HGNC Symbol;Acc:HGNC:2859]36192-3.161-0.2181Yes
104CROTcarnitine O-octanoyltransferase [Source:HGNC Symbol;Acc:HGNC:2366]36345-3.311-0.1988Yes
105ABCD2ATP binding cassette subfamily D member 2 [Source:HGNC Symbol;Acc:HGNC:66]36487-3.470-0.1781Yes
106ABCG4ATP binding cassette subfamily G member 4 [Source:HGNC Symbol;Acc:HGNC:13884]36491-3.479-0.1536Yes
107HACL12-hydroxyacyl-CoA lyase 1 [Source:HGNC Symbol;Acc:HGNC:17856]36582-3.618-0.1304Yes
108IDH1isocitrate dehydrogenase (NADP(+)) 1 [Source:HGNC Symbol;Acc:HGNC:5382]36725-3.859-0.1070Yes
109CYP27A1cytochrome P450 family 27 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2605]36764-3.931-0.0803Yes
110ABCA2ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]36770-3.946-0.0525Yes
111PFKMphosphofructokinase, muscle [Source:HGNC Symbol;Acc:HGNC:8877]36918-4.287-0.0262Yes
112PAOXpolyamine oxidase [Source:HGNC Symbol;Acc:HGNC:20837]36952-4.3650.0037Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_BILE_ACID_METABOLISM   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_BILE_ACID_METABOLISM: Random ES distribution   
Gene set null distribution of ES for HALLMARK_BILE_ACID_METABOLISM