Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.7287308
Normalized Enrichment Score (NES)1.8200173
Nominal p-value0.0
FDR q-value0.0016285714
FWER p-Value0.002
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]794.5190.0248Yes
2ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]864.4790.0513Yes
3PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]874.4610.0779Yes
4IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]1154.2960.1028Yes
5USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]1214.2540.1280Yes
6RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]1364.1810.1526Yes
7IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]1504.1270.1768Yes
8HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]2033.8620.1984Yes
9MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]2263.7820.2204Yes
10IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]2373.7320.2424Yes
11IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]2463.6850.2641Yes
12PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]2593.6670.2857Yes
13OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]2633.6320.3072Yes
14DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]2823.5620.3280Yes
15EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]2883.5540.3490Yes
16CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]3193.4630.3689Yes
17TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]3783.2660.3868Yes
18OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]4103.1660.4048Yes
19HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]4433.1350.4226Yes
20DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]5832.7550.4353Yes
21SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]6032.6890.4508Yes
22IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]6102.6800.4666Yes
23PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]6952.6120.4799Yes
24TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]7192.5810.4947Yes
25CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]7222.5790.5100Yes
26PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]7832.4530.5230Yes
27SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]7852.4430.5375Yes
28TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]8362.3540.5502Yes
29ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]9982.1600.5587Yes
30STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]10472.0890.5699Yes
31RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]10782.0540.5813Yes
32PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]10802.0490.5935Yes
33ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]11591.9490.6030Yes
34EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]11621.9420.6145Yes
35LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]14101.7880.6185Yes
36TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]14391.7530.6282Yes
37UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]14951.7140.6369Yes
38CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]14981.7110.6471Yes
39BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]16341.6050.6530Yes
40TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]16861.5710.6610Yes
41IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]17201.5400.6693Yes
42IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]17761.5020.6768Yes
43GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]17941.4910.6852Yes
44UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]17991.4870.6939Yes
45WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]20081.3490.6964Yes
46CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]21161.2860.7011Yes
47PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]23151.2150.7030Yes
48PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]23631.1880.7088Yes
49IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]25271.1170.7111Yes
50CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]25381.1130.7174Yes
51MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]25691.1010.7232Yes
52TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]27581.0220.7242Yes
53TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]29670.9440.7242Yes
54OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]30040.9230.7287Yes
55HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]32310.8330.7276No
56TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]35410.7210.7235No
57NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]41350.5390.7107No
58RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]44750.4370.7042No
59PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]45320.4210.7052No
60IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]52500.2390.6872No
61TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]56630.2000.6773No
62PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]60210.0920.6682No
63SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]65240.0000.6546No
64SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]72280.0000.6356No
65CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]88580.0000.5915No
66PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]93120.0000.5793No
67LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]93420.0000.5785No
68RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]105840.0000.5450No
69IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]116100.0000.5173No
70BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]124760.0000.4939No
71TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]134900.0000.4665No
72IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]139120.0000.4551No
73C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]155940.0000.4097No
74IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]177770.0000.3507No
75CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]190000.0000.3177No
76IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]203800.0000.2804No
77IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]208200.0000.2685No
78LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]217080.0000.2445No
79IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]30450-0.4790.0111No
80PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]30775-0.5600.0057No
81NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]30819-0.5720.0079No
82LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]31053-0.6300.0054No
83SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]32192-0.982-0.0195No
84LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]32433-1.057-0.0197No
85IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]32572-1.108-0.0168No
86IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]32892-1.216-0.0182No
87CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]33129-1.302-0.0168No
88IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]33385-1.413-0.0153No
89CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]33602-1.451-0.0125No
90ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]33756-1.496-0.0077No
91NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]33880-1.549-0.0018No
92CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]34181-1.7070.0003No
93MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]34441-1.8260.0042No
94CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]35333-2.333-0.0060No
95TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35449-2.4360.0054No
96B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]35660-2.6080.0153No
97GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36757-3.9180.0090No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE