Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.54950035
Normalized Enrichment Score (NES)1.2606099
Nominal p-value0.056034483
FDR q-value0.09574158
FWER p-Value0.274
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]414.7870.0577Yes
2FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1144.2970.1086Yes
3ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1194.2610.1608Yes
4PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]1464.1460.2111Yes
5SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]1734.0080.2596Yes
6JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]2603.6420.3021Yes
7SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]3853.2470.3386Yes
8SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]4023.1970.3775Yes
9ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]5812.7590.4066Yes
10BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]9532.2120.4237Yes
11TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]10302.1100.4476Yes
12RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]13621.8570.4615Yes
13SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]13771.8390.4837Yes
14WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]15941.6320.4980Yes
15THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]16151.6180.5173Yes
16TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]17081.5520.5339Yes
17UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]20091.3490.5423Yes
18SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]25071.1260.5428Yes
19XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]28151.0000.5468Yes
20APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]34090.7700.5402Yes
21NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]36800.6830.5413Yes
22CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]36880.6800.5495Yes
23BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]40950.5500.5453No
24HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]46360.3950.5356No
25SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]46530.3890.5399No
26PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]47520.3580.5417No
27PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]48320.3370.5437No
28CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]57080.1880.5224No
29FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]61900.0450.5099No
30FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]62470.0290.5088No
31CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]94870.0000.4213No
32CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]126290.0000.3365No
33TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]134820.0000.3135No
34NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]194480.0000.1525No
35LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]250000.0000.0026No
36IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]252860.000-0.0051No
37ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]28779-0.067-0.0986No
38MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]29056-0.139-0.1043No
39LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]29058-0.140-0.1026No
40PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]29592-0.261-0.1138No
41ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]29809-0.316-0.1158No
42TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]30532-0.493-0.1292No
43BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]30594-0.511-0.1246No
44RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]31177-0.668-0.1321No
45SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]31511-0.768-0.1316No
46SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]32005-0.914-0.1337No
47HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]32388-1.037-0.1313No
48ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]32953-1.242-0.1312No
49TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]33993-1.613-0.1395No
50SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]36211-3.184-0.1602No
51SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]36320-3.266-0.1230No
52BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36518-3.520-0.0851No
53KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36755-3.915-0.0433No
54SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]36906-4.2590.0050No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING