Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_GAQ_versus_KO_NA.Nof1.cls
#KO_GAQ_versus_KO_NA_repos
PhenotypeNof1.cls#KO_GAQ_versus_KO_NA_repos
Upregulated in classKO_GAQ
GeneSetHALLMARK_UNFOLDED_PROTEIN_RESPONSE
Enrichment Score (ES)0.5485728
Normalized Enrichment Score (NES)1.3986027
Nominal p-value0.0
FDR q-value0.03829268
FWER p-Value0.093
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IFIT1interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]1704.0180.0353Yes
2NABP1nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]4123.1620.0602Yes
3WFS1wolframin ER transmembrane glycoprotein [Source:HGNC Symbol;Acc:HGNC:12762]6772.6410.0793Yes
4HERPUD1homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]8502.3420.0979Yes
5SRPRASRP receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:11307]9282.2480.1182Yes
6ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]9932.1640.1380Yes
7HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]10902.0360.1556Yes
8SDAD1SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]11052.0090.1752Yes
9CEBPBCCAAT enhancer binding protein beta [Source:HGNC Symbol;Acc:HGNC:1834]11062.0080.1951Yes
10TATDN2TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]11331.9690.2140Yes
11RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]13671.8500.2261Yes
12DNAJB9DnaJ heat shock protein family (Hsp40) member B9 [Source:HGNC Symbol;Acc:HGNC:6968]13751.8420.2442Yes
13CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]14701.7270.2588Yes
14ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]16811.5720.2687Yes
15FUSFUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]17191.5410.2831Yes
16LSM1LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]18671.4490.2935Yes
17DCP2decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]19111.4100.3063Yes
18SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]19121.4090.3203Yes
19DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]19301.3940.3337Yes
20NOP14NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]23191.2120.3353Yes
21ATF4activating transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:786]23731.1800.3456Yes
22DCP1Adecapping mRNA 1A [Source:HGNC Symbol;Acc:HGNC:18714]24361.1550.3553Yes
23YWHAZtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]24671.1400.3659Yes
24DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]24881.1340.3766Yes
25KIF5Bkinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]25331.1150.3865Yes
26EXOSC4exosome component 4 [Source:HGNC Symbol;Acc:HGNC:18189]26301.0730.3945Yes
27EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]26421.0660.4048Yes
28SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]28300.9930.4096Yes
29SERP1stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]28310.9920.4195Yes
30EIF4EBP1eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]28750.9700.4280Yes
31PAIP1poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16945]28860.9620.4373Yes
32SRPRBSRP receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:24085]30370.9100.4422Yes
33CNOT4CCR4-NOT transcription complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:7880]31270.8680.4485Yes
34TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]31390.8660.4568Yes
35BAG3BAG cochaperone 3 [Source:HGNC Symbol;Acc:HGNC:939]34790.7450.4550Yes
36CALRcalreticulin [Source:HGNC Symbol;Acc:HGNC:1455]35060.7330.4616Yes
37EDC4enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]35270.7240.4682Yes
38HYOU1hypoxia up-regulated 1 [Source:HGNC Symbol;Acc:HGNC:16931]35930.7060.4735Yes
39NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]36330.6930.4793Yes
40LSM4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]36960.6780.4844Yes
41CNOT6CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]37200.6660.4904Yes
42NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]37320.6620.4967Yes
43SEC11ASEC11 homolog A, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:17718]39510.5920.4966Yes
44TTC37tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]40060.5770.5009Yes
45XPOTexportin for tRNA [Source:HGNC Symbol;Acc:HGNC:12826]41270.5430.5031Yes
46MTHFD2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:7434]41970.5180.5063Yes
47EIF4G1eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]42580.5000.5097Yes
48BANF1BAF nuclear assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:17397]42930.4910.5136Yes
49NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]43420.4770.5171Yes
50SSR1signal sequence receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:11323]43930.4670.5204Yes
51EXOSC2exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]44540.4420.5231Yes
52EXOSC1exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]44900.4340.5265Yes
53YIF1AYip1 interacting factor homolog A, membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:16688]46480.3910.5261Yes
54EIF4A1eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:HGNC:3282]47560.3570.5268Yes
55HSPA9heat shock protein family A (Hsp70) member 9 [Source:HGNC Symbol;Acc:HGNC:5244]47590.3560.5303Yes
56DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]48290.3380.5318Yes
57SPCS1signal peptidase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:23401]48550.3270.5343Yes
58CNOT2CCR4-NOT transcription complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:7878]48680.3250.5372Yes
59EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]49010.3180.5395Yes
60PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]49140.3140.5423Yes
61EXOSC10exosome component 10 [Source:HGNC Symbol;Acc:HGNC:9138]49920.2910.5431Yes
62PDIA5protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]50010.2870.5458Yes
63CXXC1CXXC finger protein 1 [Source:HGNC Symbol;Acc:HGNC:24343]50140.2830.5483Yes
64EIF4A2eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:HGNC:3284]50980.2580.5486Yes
65NFYAnuclear transcription factor Y subunit alpha [Source:HGNC Symbol;Acc:HGNC:7804]56240.2170.5365No
66DDX10DEAD-box helicase 10 [Source:HGNC Symbol;Acc:HGNC:2735]56960.1900.5365No
67EIF4A3eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]58050.1590.5352No
68SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]58970.1310.5340No
69SHC1SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]60880.0720.5296No
70SEC31ASEC31 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:17052]60970.0690.5300No
71EIF2AK3eukaryotic translation initiation factor 2 alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:3255]62300.0350.5268No
72IGFBP1insulin like growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5469]118920.0000.3737No
73DNAJA4DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]185940.0000.1925No
74CCL2C-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:10618]280390.000-0.0629No
75GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]28559-0.010-0.0768No
76TSPYL2TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]28703-0.048-0.0802No
77NHP2NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377]28760-0.062-0.0811No
78IARS1isoleucyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:5330]28933-0.106-0.0847No
79GEMIN4gem nuclear organelle associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]29030-0.132-0.0860No
80PDIA6protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]29167-0.167-0.0880No
81VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]29178-0.170-0.0866No
82ARFGAP1ADP ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:15852]29223-0.179-0.0860No
83MTREXMtr4 exosome RNA helicase [Source:HGNC Symbol;Acc:HGNC:18734]29413-0.219-0.0889No
84ZBTB17zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:HGNC:12936]29447-0.227-0.0876No
85HSP90B1heat shock protein 90 beta family member 1 [Source:HGNC Symbol;Acc:HGNC:12028]29534-0.248-0.0874No
86ATP6V0D1ATPase H+ transporting V0 subunit d1 [Source:HGNC Symbol;Acc:HGNC:13724]29646-0.276-0.0877No
87CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]29662-0.281-0.0853No
88DCTN1dynactin subunit 1 [Source:HGNC Symbol;Acc:HGNC:2711]29714-0.294-0.0838No
89EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]29721-0.295-0.0810No
90XBP1X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801]29889-0.329-0.0822No
91ALDH18A1aldehyde dehydrogenase 18 family member A1 [Source:HGNC Symbol;Acc:HGNC:9722]29896-0.331-0.0791No
92EXOC2exocyst complex component 2 [Source:HGNC Symbol;Acc:HGNC:24968]30153-0.396-0.0821No
93NFYBnuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805]30223-0.414-0.0799No
94KHSRPKH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]30492-0.481-0.0823No
95RPS14ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]30548-0.497-0.0789No
96ATF6activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]30682-0.533-0.0772No
97PARNpoly(A)-specific ribonuclease [Source:HGNC Symbol;Acc:HGNC:8609]30715-0.543-0.0726No
98EEF2eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]30896-0.589-0.0717No
99PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]31099-0.645-0.0707No
100CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]31156-0.662-0.0657No
101IMP3IMP U3 small nucleolar ribonucleoprotein 3 [Source:HGNC Symbol;Acc:HGNC:14497]31769-0.827-0.0740No
102KDELR3KDEL endoplasmic reticulum protein retention receptor 3 [Source:HGNC Symbol;Acc:HGNC:6306]31822-0.846-0.0670No
103ERN1endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:HGNC:3449]32189-0.980-0.0671No
104STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]32549-1.100-0.0659No
105EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]33039-1.269-0.0665No
106POP4POP4 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30081]33044-1.273-0.0540No
107SLC30A5solute carrier family 30 member 5 [Source:HGNC Symbol;Acc:HGNC:19089]33078-1.283-0.0421No
108TUBB2Atubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]33750-1.494-0.0454No
109ERO1Aendoplasmic reticulum oxidoreductase 1 alpha [Source:HGNC Symbol;Acc:HGNC:13280]34880-2.099-0.0551No
110EDEM1ER degradation enhancing alpha-mannosidase like protein 1 [Source:HGNC Symbol;Acc:HGNC:18967]34945-2.139-0.0356No
111FKBP14FKBP prolyl isomerase 14 [Source:HGNC Symbol;Acc:HGNC:18625]35339-2.338-0.0230No
112H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]35814-2.749-0.0085No
113WIPI1WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]36934-4.3260.0042No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UNFOLDED_PROTEIN_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UNFOLDED_PROTEIN_RESPONSE