Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | greenberg_collapsed_to_symbols.Nof1.cls #KO_LPS_versus_KO_NA.Nof1.cls #KO_LPS_versus_KO_NA_repos |
| Phenotype | Nof1.cls#KO_LPS_versus_KO_NA_repos |
| Upregulated in class | KO_LPS |
| GeneSet | CHR11Q22 |
| Enrichment Score (ES) | 0.48864493 |
| Normalized Enrichment Score (NES) | 1.2279489 |
| Nominal p-value | 0.03846154 |
| FDR q-value | 0.38667274 |
| FWER p-Value | 0.942 |
| SYMBOL | TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|
| 1 | MMP13 | matrix metallopeptidase 13 [Source:HGNC Symbol;Acc:HGNC:7159] | 105 | 4.607 | 0.0960 | Yes |
| 2 | CASP5 | caspase 5 [Source:HGNC Symbol;Acc:HGNC:1506] | 246 | 3.970 | 0.1774 | Yes |
| 3 | CASP1P2 | caspase 1 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:43776] | 495 | 3.234 | 0.2401 | Yes |
| 4 | CYCSP29 | CYCS pseudogene 29 [Source:HGNC Symbol;Acc:HGNC:24403] | 547 | 3.122 | 0.3057 | Yes |
| 5 | ZC3H12C | zinc finger CCCH-type containing 12C [Source:HGNC Symbol;Acc:HGNC:29362] | 1132 | 2.130 | 0.3357 | Yes |
| 6 | MTCO1P15 | MT-CO1 pseudogene 15 [Source:HGNC Symbol;Acc:HGNC:52017] | 1259 | 2.074 | 0.3768 | Yes |
| 7 | CASP1 | caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499] | 1452 | 1.852 | 0.4113 | Yes |
| 8 | MMP10 | matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156] | 1667 | 1.673 | 0.4414 | Yes |
| 9 | MSANTD4 | Myb/SANT DNA binding domain containing 4 with coiled-coils [Source:HGNC Symbol;Acc:HGNC:29383] | 1998 | 1.434 | 0.4633 | Yes |
| 10 | DCUN1D5 | defective in cullin neddylation 1 domain containing 5 [Source:HGNC Symbol;Acc:HGNC:28409] | 2475 | 1.159 | 0.4753 | Yes |
| 11 | CUL5 | cullin 5 [Source:HGNC Symbol;Acc:HGNC:2556] | 2769 | 0.992 | 0.4886 | Yes |
| 12 | SMARCE1P1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:39731] | 3549 | 0.663 | 0.4818 | No |
| 13 | MMP12 | matrix metallopeptidase 12 [Source:HGNC Symbol;Acc:HGNC:7158] | 3951 | 0.507 | 0.4819 | No |
| 14 | BIRC3 | baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591] | 4726 | 0.369 | 0.4689 | No |
| 15 | ALKBH8 | alkB homolog 8, tRNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:25189] | 5237 | 0.205 | 0.4595 | No |
| 16 | C11orf87 | chromosome 11 open reading frame 87 [Source:HGNC Symbol;Acc:HGNC:33788] | 5982 | 0.000 | 0.4394 | No |
| 17 | C11orf65 | chromosome 11 open reading frame 65 [Source:HGNC Symbol;Acc:HGNC:28519] | 6037 | 0.000 | 0.4379 | No |
| 18 | ANGPTL5 | angiopoietin like 5 [Source:HGNC Symbol;Acc:HGNC:19705] | 6628 | 0.000 | 0.4220 | No |
| 19 | MTCO2P15 | MT-CO2 pseudogene 15 [Source:HGNC Symbol;Acc:HGNC:52031] | 8773 | 0.000 | 0.3640 | No |
| 20 | CASP12 | caspase 12 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:19004] | 8900 | 0.000 | 0.3606 | No |
| 21 | GRIA4 | glutamate ionotropic receptor AMPA type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4574] | 8948 | 0.000 | 0.3594 | No |
| 22 | MTATP6P15 | MT-ATP6 pseudogene 15 [Source:HGNC Symbol;Acc:HGNC:52060] | 9019 | 0.000 | 0.3575 | No |
| 23 | CARD18 | caspase recruitment domain family member 18 [Source:HGNC Symbol;Acc:HGNC:28861] | 9657 | 0.000 | 0.3402 | No |
| 24 | CARD16 | caspase recruitment domain family member 16 [Source:HGNC Symbol;Acc:HGNC:33701] | 9658 | 0.000 | 0.3402 | No |
| 25 | MTND1P36 | MT-ND1 pseudogene 36 [Source:HGNC Symbol;Acc:HGNC:42086] | 9791 | 0.000 | 0.3367 | No |
| 26 | EXPH5 | exophilin 5 [Source:HGNC Symbol;Acc:HGNC:30578] | 10066 | 0.000 | 0.3293 | No |
| 27 | CFAP300 | cilia and flagella associated protein 300 [Source:HGNC Symbol;Acc:HGNC:28188] | 10219 | 0.000 | 0.3252 | No |
| 28 | WTAPP1 | Wilms tumor 1 associated protein pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:44115] | 10556 | 0.000 | 0.3161 | No |
| 29 | PGR-AS1 | PGR antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:52650] | 11046 | 0.000 | 0.3029 | No |
| 30 | RNU4-55P | RNA, U4 small nuclear 55, pseudogene [Source:HGNC Symbol;Acc:HGNC:46991] | 11334 | 0.000 | 0.2951 | No |
| 31 | RPA2P3 | replication protein A2 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:45118] | 11499 | 0.000 | 0.2907 | No |
| 32 | BOLA3P1 | bolA family member 3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:51440] | 12233 | 0.000 | 0.2709 | No |
| 33 | PDGFD | platelet derived growth factor D [Source:HGNC Symbol;Acc:HGNC:30620] | 13381 | 0.000 | 0.2399 | No |
| 34 | CEP126 | centrosomal protein 126 [Source:HGNC Symbol;Acc:HGNC:29264] | 13859 | 0.000 | 0.2270 | No |
| 35 | MTCO3P15 | MT-CO3 pseudogene 15 [Source:HGNC Symbol;Acc:HGNC:52045] | 13880 | 0.000 | 0.2265 | No |
| 36 | LINC02552 | long intergenic non-protein coding RNA 2552 [Source:HGNC Symbol;Acc:HGNC:53587] | 14340 | 0.000 | 0.2140 | No |
| 37 | RNU6-277P | RNA, U6 small nuclear 277, pseudogene [Source:HGNC Symbol;Acc:HGNC:47240] | 14424 | 0.000 | 0.2118 | No |
| 38 | ARHGAP42 | Rho GTPase activating protein 42 [Source:HGNC Symbol;Acc:HGNC:26545] | 15038 | 0.000 | 0.1952 | No |
| 39 | RNU6-952P | RNA, U6 small nuclear 952, pseudogene [Source:HGNC Symbol;Acc:HGNC:47915] | 15347 | 0.000 | 0.1869 | No |
| 40 | RNU6-654P | RNA, U6 small nuclear 654, pseudogene [Source:HGNC Symbol;Acc:HGNC:47617] | 15427 | 0.000 | 0.1848 | No |
| 41 | SLC35F2 | solute carrier family 35 member F2 [Source:HGNC Symbol;Acc:HGNC:23615] | 15821 | 0.000 | 0.1742 | No |
| 42 | CASP1P1 | caspase 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:43775] | 16231 | 0.000 | 0.1631 | No |
| 43 | OR2AL1P | olfactory receptor family 2 subfamily AL member 1 pseudogene [Source:HGNC Symbol;Acc:HGNC:14712] | 16895 | 0.000 | 0.1452 | No |
| 44 | RNA5SP349 | RNA, 5S ribosomal pseudogene 349 [Source:HGNC Symbol;Acc:HGNC:43249] | 16904 | 0.000 | 0.1450 | No |
| 45 | RNA5SP347 | RNA, 5S ribosomal pseudogene 347 [Source:HGNC Symbol;Acc:HGNC:43247] | 16905 | 0.000 | 0.1450 | No |
| 46 | RN7SKP53 | RN7SK pseudogene 53 [Source:HGNC Symbol;Acc:HGNC:45777] | 18583 | 0.000 | 0.0997 | No |
| 47 | MMP7 | matrix metallopeptidase 7 [Source:HGNC Symbol;Acc:HGNC:7174] | 19125 | 0.000 | 0.0850 | No |
| 48 | MMP1 | matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155] | 19128 | 0.000 | 0.0850 | No |
| 49 | MMP3 | matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173] | 19132 | 0.000 | 0.0849 | No |
| 50 | MMP8 | matrix metallopeptidase 8 [Source:HGNC Symbol;Acc:HGNC:7175] | 19138 | 0.000 | 0.0848 | No |
| 51 | AP002001.1 | zinc finger protein family pseudogene | 19243 | 0.000 | 0.0820 | No |
| 52 | RNU7-159P | RNA, U7 small nuclear 159 pseudogene [Source:HGNC Symbol;Acc:HGNC:45693] | 21205 | 0.000 | 0.0290 | No |
| 53 | RN7SL222P | RNA, 7SL, cytoplasmic 222, pseudogene [Source:HGNC Symbol;Acc:HGNC:46238] | 21392 | 0.000 | 0.0239 | No |
| 54 | CNTN5 | contactin 5 [Source:HGNC Symbol;Acc:HGNC:2175] | 22298 | 0.000 | -0.0005 | No |
| 55 | DDI1 | DNA damage inducible 1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18961] | 23529 | 0.000 | -0.0338 | No |
| 56 | ELMOD1 | ELMO domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25334] | 23690 | 0.000 | -0.0381 | No |
| 57 | GUCY1A2 | guanylate cyclase 1 soluble subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:4684] | 23889 | 0.000 | -0.0434 | No |
| 58 | CASP4 | caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505] | 23919 | 0.000 | -0.0442 | No |
| 59 | MIR4693 | microRNA 4693 [Source:HGNC Symbol;Acc:HGNC:41818] | 24533 | 0.000 | -0.0608 | No |
| 60 | PGR | progesterone receptor [Source:HGNC Symbol;Acc:HGNC:8910] | 24689 | 0.000 | -0.0650 | No |
| 61 | TRPC6 | transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338] | 24739 | 0.000 | -0.0663 | No |
| 62 | RN7SKP115 | RN7SK pseudogene 115 [Source:HGNC Symbol;Acc:HGNC:45839] | 25248 | 0.000 | -0.0800 | No |
| 63 | MTND2P26 | MT-ND2 pseudogene 26 [Source:HGNC Symbol;Acc:HGNC:42127] | 25447 | 0.000 | -0.0854 | No |
| 64 | MIR3920 | microRNA 3920 [Source:HGNC Symbol;Acc:HGNC:38974] | 25588 | 0.000 | -0.0892 | No |
| 65 | MMP20 | matrix metallopeptidase 20 [Source:HGNC Symbol;Acc:HGNC:7167] | 25619 | 0.000 | -0.0900 | No |
| 66 | MMP27 | matrix metallopeptidase 27 [Source:HGNC Symbol;Acc:HGNC:14250] | 25627 | 0.000 | -0.0902 | No |
| 67 | SLN | sarcolipin [Source:HGNC Symbol;Acc:HGNC:11089] | 25668 | 0.000 | -0.0912 | No |
| 68 | AP001830.1 | novel transcript | 26339 | 0.000 | -0.1093 | No |
| 69 | AP001830.2 | novel transcript, antisense to TMEM123 | 26341 | 0.000 | -0.1094 | No |
| 70 | YAP1 | Yes1 associated transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:16262] | 27134 | 0.000 | -0.1308 | No |
| 71 | RPSAP50 | ribosomal protein SA pseudogene 50 [Source:HGNC Symbol;Acc:HGNC:35896] | 27323 | 0.000 | -0.1358 | No |
| 72 | RAB39A | RAB39A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:16521] | 29041 | -0.244 | -0.1770 | No |
| 73 | DDX10 | DEAD-box helicase 10 [Source:HGNC Symbol;Acc:HGNC:2735] | 29110 | -0.256 | -0.1733 | No |
| 74 | DYNC2H1 | dynein cytoplasmic 2 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962] | 29477 | -0.362 | -0.1755 | No |
| 75 | CWF19L2 | CWF19 like cell cycle control factor 2 [Source:HGNC Symbol;Acc:HGNC:26508] | 30554 | -0.638 | -0.1909 | No |
| 76 | CARD17 | caspase recruitment domain family member 17 [Source:HGNC Symbol;Acc:HGNC:33827] | 30679 | -0.678 | -0.1797 | No |
| 77 | AASDHPPT | aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:HGNC Symbol;Acc:HGNC:14235] | 31432 | -0.904 | -0.1806 | No |
| 78 | TMEM123 | transmembrane protein 123 [Source:HGNC Symbol;Acc:HGNC:30138] | 31479 | -0.914 | -0.1622 | No |
| 79 | BIRC2 | baculoviral IAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:590] | 31874 | -1.048 | -0.1504 | No |
| 80 | NPAT | nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896] | 32106 | -1.140 | -0.1322 | No |
| 81 | RDX | radixin [Source:HGNC Symbol;Acc:HGNC:9944] | 32218 | -1.185 | -0.1097 | No |
| 82 | KBTBD3 | kelch repeat and BTB domain containing 3 [Source:HGNC Symbol;Acc:HGNC:22934] | 32309 | -1.226 | -0.0859 | No |
| 83 | ACAT1 | acetyl-CoA acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:93] | 33726 | -1.764 | -0.0863 | No |
| 84 | ATM | ATM serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:795] | 33775 | -1.796 | -0.0491 | No |
| 85 | FDX1 | ferredoxin 1 [Source:HGNC Symbol;Acc:HGNC:3638] | 35250 | -2.679 | -0.0314 | No |
| 86 | POGLUT3 | protein O-glucosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:28496] | 36419 | -3.780 | 0.0181 | No |
