Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetCHR3Q25
Enrichment Score (ES)0.42803124
Normalized Enrichment Score (NES)1.1094471
Nominal p-value0.14457831
FDR q-value0.47743484
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: CHR3Q25   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1KCNAB1potassium voltage-gated channel subfamily A member regulatory beta subunit 1 [Source:HGNC Symbol;Acc:HGNC:6228]2064.0860.0470Yes
2SHOX2short stature homeobox 2 [Source:HGNC Symbol;Acc:HGNC:10854]2963.7950.0933Yes
3DYNLL1P5dynein light chain LC8-type 1 pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:49656]3443.6280.1387Yes
4HMGN2P13high mobility group nucleosomal binding domain 2 pseudogene 13 [Source:HGNC Symbol;Acc:HGNC:33557]3543.5830.1845Yes
5MLF1myeloid leukemia factor 1 [Source:HGNC Symbol;Acc:HGNC:7125]3763.5510.2296Yes
6RPL32P9ribosomal protein L32 pseudogene 9 [Source:HGNC Symbol;Acc:HGNC:35481]4813.2650.2688Yes
7METTL15P1methyltransferase like 15 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:31926]6712.8390.3002Yes
8KPNA4karyopherin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6397]8432.5840.3288Yes
9TSC22D2TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]12752.0660.3437Yes
10WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]15801.7370.3578Yes
11SETP11SET pseudogene 11 [Source:HGNC Symbol;Acc:HGNC:42930]17691.5690.3729Yes
12SLC33A1solute carrier family 33 member 1 [Source:HGNC Symbol;Acc:HGNC:95]20591.3860.3828Yes
13CCNL1cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]24301.1720.3879Yes
14SIAH2siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]26121.0680.3967Yes
15SERP1stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]26791.0300.4082Yes
16HNRNPA1P24heterogeneous nuclear ribonucleoprotein A1 pseudogene 24 [Source:HGNC Symbol;Acc:HGNC:39542]29310.9150.4132Yes
17PPM1Lprotein phosphatase, Mg2+/Mn2+ dependent 1L [Source:HGNC Symbol;Acc:HGNC:16381]29930.8880.4229Yes
18TIPARPTCDD inducible poly(ADP-ribose) polymerase [Source:HGNC Symbol;Acc:HGNC:23696]36530.6180.4130Yes
19SELENOTselenoprotein T [Source:HGNC Symbol;Acc:HGNC:18136]37610.5780.4176Yes
20PA2G4P4proliferation-associated 2G4 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:32217]38700.5350.4215Yes
21SCARNA7small Cajal body-specific RNA 7 [Source:HGNC Symbol;Acc:HGNC:32563]42340.4730.4178Yes
22FKBP1AP4FKBP prolyl isomerase 1A pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:3717]42720.4730.4229Yes
23COMMD2COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]44910.4470.4227Yes
24SSR3signal sequence receptor subunit 3 [Source:HGNC Symbol;Acc:HGNC:11325]45050.4410.4280Yes
25C3orf33chromosome 3 open reading frame 33 [Source:HGNC Symbol;Acc:HGNC:26434]50910.2470.4154No
26GFM1G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]51170.2370.4177No
27DHX36DEAH-box helicase 36 [Source:HGNC Symbol;Acc:HGNC:14410]51540.2300.4197No
28RPL9P15ribosomal protein L9 pseudogene 15 [Source:HGNC Symbol;Acc:HGNC:35539]60310.0000.3960No
29LINC01487long intergenic non-protein coding RNA 1487 [Source:HGNC Symbol;Acc:HGNC:51139]63730.0000.3868No
30STRIT1small transmembrane regulator of ion transport 1 [Source:HGNC Symbol;Acc:HGNC:52297]67940.0000.3754No
31TM4SF18transmembrane 4 L six family member 18 [Source:HGNC Symbol;Acc:HGNC:25181]67970.0000.3754No
32RNU2-31PRNA, U2 small nuclear 31, pseudogene [Source:HGNC Symbol;Acc:HGNC:48524]79350.0000.3446No
33RNU6-1098PRNA, U6 small nuclear 1098, pseudogene [Source:HGNC Symbol;Acc:HGNC:48061]79820.0000.3433No
34LINC01213long intergenic non-protein coding RNA 1213 [Source:HGNC Symbol;Acc:HGNC:49648]82470.0000.3362No
35LINC01214long intergenic non-protein coding RNA 1214 [Source:HGNC Symbol;Acc:HGNC:49650]82500.0000.3361No
36AC106707.1novel transcript, antisense to RSRC185410.0000.3283No
37LINC01100long intergenic non-protein coding RNA 1100 [Source:HGNC Symbol;Acc:HGNC:49224]86060.0000.3266No
38TIPARP-AS1TIPARP antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41028]88680.0000.3195No
39PLCH1-AS1PLCH1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41231]89790.0000.3165No
40PLCH1-AS2PLCH1 antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:41232]89800.0000.3165No
41VEPH1ventricular zone expressed PH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25735]91490.0000.3120No
42SLC66A1Lsolute carrier family 66 member 1 like [Source:HGNC Symbol;Acc:HGNC:25146]99980.0000.2890No
43KLF3P2Kruppel like factor 3 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:41519]100820.0000.2868No
44AADACarylacetamide deacetylase [Source:HGNC Symbol;Acc:HGNC:17]101100.0000.2860No
45RNU7-136PRNA, U7 small nuclear 136 pseudogene [Source:HGNC Symbol;Acc:HGNC:45670]101780.0000.2842No
46SNRPCP3small nuclear ribonucleoprotein polypeptide C pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:49818]106230.0000.2722No
47IGSF10immunoglobulin superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:26384]106850.0000.2706No
48ARHGEF26-AS1ARHGEF26 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41048]108630.0000.2658No
49MINDY4BMINDY family member 4B [Source:HGNC Symbol;Acc:HGNC:35475]109180.0000.2643No
50TM4SF4transmembrane 4 L six family member 4 [Source:HGNC Symbol;Acc:HGNC:11856]112860.0000.2544No
51TM4SF1transmembrane 4 L six family member 1 [Source:HGNC Symbol;Acc:HGNC:11853]112870.0000.2544No
52IL12A-AS1IL12A antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:49094]115970.0000.2460No
53CPHL1Pceruloplasmin and hephaestin like 1, pseudogene [Source:HGNC Symbol;Acc:HGNC:31714]117070.0000.2431No
54RNU6-507PRNA, U6 small nuclear 507, pseudogene [Source:HGNC Symbol;Acc:HGNC:47470]117420.0000.2421No
55MIR5186microRNA 5186 [Source:HGNC Symbol;Acc:HGNC:43459]117910.0000.2408No
56MED12Lmediator complex subunit 12L [Source:HGNC Symbol;Acc:HGNC:16050]119920.0000.2354No
57PTX3pentraxin 3 [Source:HGNC Symbol;Acc:HGNC:9692]121520.0000.2311No
58LINC00886long intergenic non-protein coding RNA 886 [Source:HGNC Symbol;Acc:HGNC:48572]121750.0000.2305No
59WWTR1-IT1WWTR1 intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:41469]124730.0000.2225No
60MBNL1-AS1MBNL1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44584]126110.0000.2188No
61LINC02877long intergenic non-protein coding RNA 2877 [Source:HGNC Symbol;Acc:HGNC:37259]131380.0000.2045No
62RNU6-901PRNA, U6 small nuclear 901, pseudogene [Source:HGNC Symbol;Acc:HGNC:47864]132190.0000.2024No
63CLRN1-AS1CLRN1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:30895]137170.0000.1889No
64KCNAB1-AS2KCNAB1 antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:40315]137600.0000.1878No
65KCNAB1-AS1KCNAB1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40316]137610.0000.1878No
66P2RY1purinergic receptor P2Y1 [Source:HGNC Symbol;Acc:HGNC:8539]139840.0000.1818No
67SIAH2-AS1SIAH2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40526]141410.0000.1776No
68WWTR1-AS1WWTR1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41035]146190.0000.1646No
69MIR16-2microRNA 16-2 [Source:HGNC Symbol;Acc:HGNC:31546]150710.0000.1524No
70ARL14ADP ribosylation factor like GTPase 14 [Source:HGNC Symbol;Acc:HGNC:22974]152620.0000.1473No
71C3orf80chromosome 3 open reading frame 80 [Source:HGNC Symbol;Acc:HGNC:40048]159060.0000.1299No
72RN7SL300PRNA, 7SL, cytoplasmic 300, pseudogene [Source:HGNC Symbol;Acc:HGNC:46316]159420.0000.1289No
73SNORA72small nucleolar RNA, H/ACA box 72 [Source:HGNC Symbol;Acc:HGNC:10234]160620.0000.1257No
74GPR171G protein-coupled receptor 171 [Source:HGNC Symbol;Acc:HGNC:30057]162810.0000.1198No
75KRT8P12keratin 8 pseudogene 12 [Source:HGNC Symbol;Acc:HGNC:28057]163400.0000.1183No
76GPR149G protein-coupled receptor 149 [Source:HGNC Symbol;Acc:HGNC:23627]163990.0000.1167No
77RPL21P42ribosomal protein L21 pseudogene 42 [Source:HGNC Symbol;Acc:HGNC:37017]167620.0000.1069No
78GPR79G protein-coupled receptor 79, pseudogene [Source:HGNC Symbol;Acc:HGNC:4529]175170.0000.0865No
79GPR87G protein-coupled receptor 87 [Source:HGNC Symbol;Acc:HGNC:4538]175250.0000.0863No
80IQCJ-SCHIP1IQCJ-SCHIP1 readthrough [Source:HGNC Symbol;Acc:HGNC:38842]179510.0000.0748No
81RN7SKP177RN7SK pseudogene 177 [Source:HGNC Symbol;Acc:HGNC:45901]183690.0000.0635No
82IQCJ-SCHIP1-AS1IQCJ-SCHIP1 readthrough antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41303]184930.0000.0602No
83RN7SKP46RN7SK pseudogene 46 [Source:HGNC Symbol;Acc:HGNC:45770]185490.0000.0587No
84MTAPP1methylthioadenosine phosphorylase pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:42442]188450.0000.0507No
85MMEmembrane metalloendopeptidase [Source:HGNC Symbol;Acc:HGNC:7154]190210.0000.0460No
86RNA5SP146RNA, 5S ribosomal pseudogene 146 [Source:HGNC Symbol;Acc:HGNC:43046]191090.0000.0436No
87RNA5SP145RNA, 5S ribosomal pseudogene 145 [Source:HGNC Symbol;Acc:HGNC:43045]191100.0000.0436No
88AADACL2-AS1AADACL2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:50301]191540.0000.0424No
89MRPL42P6mitochondrial ribosomal protein L42 pseudogene 6 [Source:HGNC Symbol;Acc:HGNC:44533]198800.0000.0228No
90LINC00880long intergenic non-protein coding RNA 880 [Source:HGNC Symbol;Acc:HGNC:27948]200540.0000.0181No
91LINC00881long intergenic non-protein coding RNA 881 [Source:HGNC Symbol;Acc:HGNC:48567]200560.0000.0181No
92SCHIP1schwannomin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:15678]204470.0000.0076No
93KRT18P34keratin 18 pseudogene 34 [Source:HGNC Symbol;Acc:HGNC:33403]204650.0000.0071No
94RARRES1retinoic acid receptor responder 1 [Source:HGNC Symbol;Acc:HGNC:9867]212840.000-0.0150No
95MME-AS1MME antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40376]213080.000-0.0157No
96ERICH6-AS1ERICH6 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:41205]224770.000-0.0473No
97ARHGEF26Rho guanine nucleotide exchange factor 26 [Source:HGNC Symbol;Acc:HGNC:24490]230160.000-0.0618No
98PLCH1phospholipase C eta 1 [Source:HGNC Symbol;Acc:HGNC:29185]231210.000-0.0647No
99CLRN1clarin 1 [Source:HGNC Symbol;Acc:HGNC:12605]236530.000-0.0790No
100IL12Ainterleukin 12A [Source:HGNC Symbol;Acc:HGNC:5969]241120.000-0.0914No
101AADACL2arylacetamide deacetylase like 2 [Source:HGNC Symbol;Acc:HGNC:24427]249880.000-0.1151No
102AADACP1arylacetamide deacetylase pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:50305]250190.000-0.1159No
103LINC01998long intergenic non-protein coding RNA 1998 [Source:HGNC Symbol;Acc:HGNC:52832]251680.000-0.1199No
104ATP5MGP5ATP synthase membrane subunit g pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:38167]252930.000-0.1233No
105SUCNR1succinate receptor 1 [Source:HGNC Symbol;Acc:HGNC:4542]254850.000-0.1285No
106MIR3919microRNA 3919 [Source:HGNC Symbol;Acc:HGNC:38890]255700.000-0.1307No
107MIR15BmicroRNA 15b [Source:HGNC Symbol;Acc:HGNC:31544]259840.000-0.1419No
108IQCJIQ motif containing J [Source:HGNC Symbol;Acc:HGNC:32406]260330.000-0.1432No
109ERICH6glutamate rich 6 [Source:HGNC Symbol;Acc:HGNC:28602]260540.000-0.1438No
110P2RY12purinergic receptor P2Y12 [Source:HGNC Symbol;Acc:HGNC:18124]261630.000-0.1467No
111P2RY13purinergic receptor P2Y13 [Source:HGNC Symbol;Acc:HGNC:4537]261640.000-0.1467No
112P2RY14purinergic receptor P2Y14 [Source:HGNC Symbol;Acc:HGNC:16442]261680.000-0.1468No
113LINC02029long intergenic non-protein coding RNA 2029 [Source:HGNC Symbol;Acc:HGNC:52863]263010.000-0.1503No
114LINC02066long intergenic non-protein coding RNA 2066 [Source:HGNC Symbol;Acc:HGNC:52911]263040.000-0.1504No
115LINC02006long intergenic non-protein coding RNA 2006 [Source:HGNC Symbol;Acc:HGNC:52842]263990.000-0.1529No
116TMEM14EPtransmembrane protein 14E, pseudogene [Source:HGNC Symbol;Acc:HGNC:34386]264360.000-0.1539No
117RNU6-720PRNA, U6 small nuclear 720, pseudogene [Source:HGNC Symbol;Acc:HGNC:47683]269310.000-0.1673No
118VN2R1Pvomeronasal 2 receptor 1 pseudogene [Source:HGNC Symbol;Acc:HGNC:30344]272850.000-0.1768No
119TM4SF1-AS1TM4SF1 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40587]277980.000-0.1907No
120LEKR1leucine, glutamate and lysine rich 1 [Source:HGNC Symbol;Acc:HGNC:33765]28163-0.013-0.2004No
121BRD7P2bromodomain containing 7 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:33541]28443-0.088-0.2068No
122PABPC1P10poly(A) binding protein cytoplasmic 1 pseudogene 10 [Source:HGNC Symbol;Acc:HGNC:37992]28751-0.170-0.2129No
123SETP14SET pseudogene 14 [Source:HGNC Symbol;Acc:HGNC:42933]28811-0.186-0.2121No
124B3GAT3P1beta-1,3-glucuronyltransferase 3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:35243]28979-0.231-0.2137No
125MFSD1major facilitator superfamily domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25874]29346-0.326-0.2194No
126ALG1L15PALG1 like 15, pseudogene [Source:HGNC Symbol;Acc:HGNC:44384]30748-0.696-0.2484No
127GMPSguanine monophosphate synthase [Source:HGNC Symbol;Acc:HGNC:4378]31027-0.781-0.2458No
128RPL6P8ribosomal protein L6 pseudogene 8 [Source:HGNC Symbol;Acc:HGNC:37044]31088-0.795-0.2372No
129DDX50P2DEAD-box helicase 50 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:18975]31513-0.921-0.2369No
130RNF13ring finger protein 13 [Source:HGNC Symbol;Acc:HGNC:10057]31725-1.000-0.2297No
131RSRC1arginine and serine rich coiled-coil 1 [Source:HGNC Symbol;Acc:HGNC:24152]32169-1.166-0.2267No
132RPL6P7ribosomal protein L6 pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:35801]32456-1.232-0.2186No
133LXNlatexin [Source:HGNC Symbol;Acc:HGNC:13347]33008-1.453-0.2149No
134MRE11P1MRE11 homolog, double strand break repair nuclease pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:7231]33213-1.540-0.2006No
135RAP2BRAP2B, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9862]33294-1.573-0.1825No
136SYPL1P1synaptophysin like 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:53546]33298-1.574-0.1624No
137IFT80intraflagellar transport 80 [Source:HGNC Symbol;Acc:HGNC:29262]33353-1.595-0.1433No
138MBNL1muscleblind like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]33568-1.701-0.1272No
139NPM1P29nucleophosmin 1 pseudogene 29 [Source:HGNC Symbol;Acc:HGNC:45208]33645-1.740-0.1069No
140CPceruloplasmin [Source:HGNC Symbol;Acc:HGNC:2295]33718-1.761-0.0862No
141EIF2Aeukaryotic translation initiation factor 2A [Source:HGNC Symbol;Acc:HGNC:3254]33814-1.819-0.0654No
142ANKUB1ankyrin repeat and ubiquitin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29642]34243-2.050-0.0507No
143SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]35393-2.750-0.0464No
144PFN2profilin 2 [Source:HGNC Symbol;Acc:HGNC:8882]36065-3.397-0.0209No
145TRIM59tripartite motif containing 59 [Source:HGNC Symbol;Acc:HGNC:30834]36420-3.7810.0181No
Table: GSEA details [plain text format]



Fig 2: CHR3Q25   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CHR3Q25: Random ES distribution   
Gene set null distribution of ES for CHR3Q25