Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetCROONQUIST_NRAS_SIGNALING_DN
Enrichment Score (ES)-0.8526651
Normalized Enrichment Score (NES)-1.7160742
Nominal p-value0.0
FDR q-value6.790106E-4
FWER p-Value0.008
Table: GSEA Results Summary



Fig 1: Enrichment plot: CROONQUIST_NRAS_SIGNALING_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SBNO2strawberry notch homolog 2 [Source:HGNC Symbol;Acc:HGNC:29158]17571.579-0.0396No
2MYRFmyelin regulatory factor [Source:HGNC Symbol;Acc:HGNC:1181]18401.519-0.0343No
3GNAI1G protein subunit alpha i1 [Source:HGNC Symbol;Acc:HGNC:4384]22371.283-0.0386No
4EIF5eukaryotic translation initiation factor 5 [Source:HGNC Symbol;Acc:HGNC:3299]28990.927-0.0519No
5HMGA1high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:HGNC:5010]31280.828-0.0539No
6SNRPA1small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:HGNC:11152]51990.213-0.1088No
7APOBEC3Bapolipoprotein B mRNA editing enzyme catalytic subunit 3B [Source:HGNC Symbol;Acc:HGNC:17352]122930.000-0.3004No
8CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]210140.000-0.5359No
9ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]232530.000-0.5964No
10PLOD2procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]30375-0.578-0.7858No
11BRD8bromodomain containing 8 [Source:HGNC Symbol;Acc:HGNC:19874]31810-1.027-0.8195No
12CSE1Lchromosome segregation 1 like [Source:HGNC Symbol;Acc:HGNC:2431]31941-1.072-0.8177No
13PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32234-1.194-0.8196No
14PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]32691-1.316-0.8254No
15RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33302-1.578-0.8341No
16CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]33303-1.578-0.8262No
17NASPnuclear autoantigenic sperm protein [Source:HGNC Symbol;Acc:HGNC:7644]34283-2.068-0.8424Yes
18HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]34287-2.069-0.8322Yes
19MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34480-2.139-0.8268Yes
20POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]34553-2.199-0.8178Yes
21CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]34580-2.221-0.8075Yes
22PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]34858-2.395-0.8031Yes
23SMC2structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]35087-2.553-0.7965Yes
24MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35150-2.598-0.7853Yes
25DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]35154-2.602-0.7725Yes
26TRIP13thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]35157-2.606-0.7596Yes
27GALEUDP-galactose-4-epimerase [Source:HGNC Symbol;Acc:HGNC:4116]35352-2.722-0.7513Yes
28SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]35393-2.750-0.7388Yes
29TPX2TPX2 microtubule nucleation factor [Source:HGNC Symbol;Acc:HGNC:1249]35409-2.763-0.7254Yes
30CHEK1checkpoint kinase 1 [Source:HGNC Symbol;Acc:HGNC:1925]35483-2.821-0.7134Yes
31GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]35585-2.932-0.7016Yes
32RAD51CRAD51 paralog C [Source:HGNC Symbol;Acc:HGNC:9820]35677-3.050-0.6889Yes
33PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]35722-3.059-0.6749Yes
34MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]35740-3.078-0.6601Yes
35UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]35837-3.176-0.6469Yes
36CHAF1Achromatin assembly factor 1 subunit A [Source:HGNC Symbol;Acc:HGNC:1910]35929-3.291-0.6330Yes
37CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]36019-3.358-0.6187Yes
38MCM7minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]36039-3.372-0.6025Yes
39TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36054-3.383-0.5861Yes
40BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]36096-3.434-0.5702Yes
41POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36128-3.460-0.5538Yes
42AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]36154-3.490-0.5372Yes
43STMN1stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]36157-3.491-0.5199Yes
44CHEK2checkpoint kinase 2 [Source:HGNC Symbol;Acc:HGNC:16627]36178-3.510-0.5030Yes
45PTP4A3protein tyrosine phosphatase 4A3 [Source:HGNC Symbol;Acc:HGNC:9636]36291-3.616-0.4881Yes
46GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36315-3.646-0.4706Yes
47TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]36325-3.667-0.4526Yes
48SPAG5sperm associated antigen 5 [Source:HGNC Symbol;Acc:HGNC:13452]36366-3.704-0.4353Yes
49KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36388-3.732-0.4174Yes
50CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]36393-3.744-0.3989Yes
51CDC20cell division cycle 20 [Source:HGNC Symbol;Acc:HGNC:1723]36488-3.857-0.3823Yes
52NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36519-3.907-0.3637Yes
53WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36574-3.975-0.3454Yes
54CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]36584-3.986-0.3259Yes
55MYBL2MYB proto-oncogene like 2 [Source:HGNC Symbol;Acc:HGNC:7548]36588-3.994-0.3061Yes
56AURKBaurora kinase B [Source:HGNC Symbol;Acc:HGNC:11390]36589-3.996-0.2863Yes
57H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]36591-3.999-0.2664Yes
58PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]36660-4.066-0.2481Yes
59KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36668-4.079-0.2280Yes
60CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36709-4.137-0.2086Yes
61OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]36718-4.146-0.1882Yes
62KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36747-4.186-0.1682Yes
63CDC25Ccell division cycle 25C [Source:HGNC Symbol;Acc:HGNC:1727]36777-4.228-0.1480Yes
64SPC25SPC25 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:24031]36783-4.238-0.1271Yes
65FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36833-4.338-0.1069Yes
66CCNA2cyclin A2 [Source:HGNC Symbol;Acc:HGNC:1578]36838-4.351-0.0854Yes
67NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]36851-4.372-0.0640Yes
68STILSTIL centriolar assembly protein [Source:HGNC Symbol;Acc:HGNC:10879]36936-4.534-0.0437Yes
69TK1thymidine kinase 1 [Source:HGNC Symbol;Acc:HGNC:11830]37007-4.708-0.0222Yes
70MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]37062-4.9280.0008Yes
Table: GSEA details [plain text format]



Fig 2: CROONQUIST_NRAS_SIGNALING_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CROONQUIST_NRAS_SIGNALING_DN: Random ES distribution   
Gene set null distribution of ES for CROONQUIST_NRAS_SIGNALING_DN