Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetGHANDHI_BYSTANDER_IRRADIATION_UP
Enrichment Score (ES)0.8011433
Normalized Enrichment Score (NES)1.9930898
Nominal p-value0.0
FDR q-value2.977818E-4
FWER p-Value0.003
Table: GSEA Results Summary



Fig 1: Enrichment plot: GHANDHI_BYSTANDER_IRRADIATION_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]34.9980.0390Yes
2LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]164.9720.0775Yes
3PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]264.9530.1159Yes
4IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]284.9480.1545Yes
5DUSP5dual specificity phosphatase 5 [Source:HGNC Symbol;Acc:HGNC:3071]384.9220.1927Yes
6SERPINB2serpin family B member 2 [Source:HGNC Symbol;Acc:HGNC:8584]524.8450.2302Yes
7DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]684.7620.2670Yes
8NFKBIZNFKB inhibitor zeta [Source:HGNC Symbol;Acc:HGNC:29805]694.7610.3042Yes
9CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]784.7270.3409Yes
10CREB5cAMP responsive element binding protein 5 [Source:HGNC Symbol;Acc:HGNC:16844]1214.4930.3749Yes
11BCL2A1BCL2 related protein A1 [Source:HGNC Symbol;Acc:HGNC:991]1304.4300.4093Yes
12SLC7A11solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]1944.1580.4401Yes
13GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]2723.8600.4681Yes
14OSGIN2oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]2823.8300.4978Yes
15PTGESprostaglandin E synthase [Source:HGNC Symbol;Acc:HGNC:9599]3583.5810.5238Yes
16TNFAIP3TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]3753.5570.5511Yes
17SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]4273.3590.5760Yes
18TNFSF15TNF superfamily member 15 [Source:HGNC Symbol;Acc:HGNC:11931]4283.3540.6022Yes
19MT1Gmetallothionein 1G [Source:HGNC Symbol;Acc:HGNC:7399]4773.2760.6265Yes
20POU2F2POU class 2 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9213]5673.0660.6480Yes
21IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]9142.4610.6579Yes
22MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]10852.1820.6704Yes
23ZC3H12Czinc finger CCCH-type containing 12C [Source:HGNC Symbol;Acc:HGNC:29362]11322.1300.6858Yes
24AHRaryl hydrocarbon receptor [Source:HGNC Symbol;Acc:HGNC:348]11462.0990.7018Yes
25SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]12962.0400.7137Yes
26MT1Emetallothionein 1E [Source:HGNC Symbol;Acc:HGNC:7397]13232.0040.7287Yes
27TUT7terminal uridylyl transferase 7 [Source:HGNC Symbol;Acc:HGNC:25817]13921.9220.7418Yes
28INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]15871.7260.7501Yes
29SLC39A14solute carrier family 39 member 14 [Source:HGNC Symbol;Acc:HGNC:20858]16131.7050.7627Yes
30PLEK2pleckstrin 2 [Source:HGNC Symbol;Acc:HGNC:19238]16601.6820.7746Yes
31MMP10matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]16671.6730.7875Yes
32GCLMglutamate-cysteine ligase modifier subunit [Source:HGNC Symbol;Acc:HGNC:4312]18651.4960.7939Yes
33NAMPTP1nicotinamide phosphoribosyltransferase pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:17633]22391.2810.7938Yes
34NAMPTnicotinamide phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:30092]23251.2310.8011Yes
35C9orf72C9orf72-SMCR8 complex subunit [Source:HGNC Symbol;Acc:HGNC:28337]28400.9590.7947No
36DNAJB4DnaJ heat shock protein family (Hsp40) member B4 [Source:HGNC Symbol;Acc:HGNC:14886]33780.7270.7859No
37RGS9regulator of G protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]35820.6470.7855No
38RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]38860.5280.7814No
39ATP6V1C1ATPase H+ transporting V1 subunit C1 [Source:HGNC Symbol;Acc:HGNC:856]39410.5100.7839No
40PPP4R3Bprotein phosphatase 4 regulatory subunit 3B [Source:HGNC Symbol;Acc:HGNC:29267]39600.5030.7874No
41GADD45Ggrowth arrest and DNA damage inducible gamma [Source:HGNC Symbol;Acc:HGNC:4097]43190.4730.7814No
42MT1Hmetallothionein 1H [Source:HGNC Symbol;Acc:HGNC:7400]43200.4730.7851No
43SLC39A8solute carrier family 39 member 8 [Source:HGNC Symbol;Acc:HGNC:20862]43900.4730.7869No
44MT1Bmetallothionein 1B [Source:HGNC Symbol;Acc:HGNC:7394]44070.4690.7902No
45ZSWIM8zinc finger SWIM-type containing 8 [Source:HGNC Symbol;Acc:HGNC:23528]46680.3840.7862No
46BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]47260.3690.7875No
47PHEXphosphate regulating endopeptidase homolog X-linked [Source:HGNC Symbol;Acc:HGNC:8918]54170.1530.7700No
48MCTP1multiple C2 and transmembrane domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26183]76300.0000.7103No
49MCTP2multiple C2 and transmembrane domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25636]76430.0000.7099No
50POPDC3popeye domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17649]84150.0000.6891No
51SLC16A6P1SLC16A6 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:48932]101670.0000.6418No
52B3GNT5UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:15684]104970.0000.6329No
53SLC6A15solute carrier family 6 member 15 [Source:HGNC Symbol;Acc:HGNC:13621]116260.0000.6024No
54PTGFRprostaglandin F receptor [Source:HGNC Symbol;Acc:HGNC:9600]116420.0000.6020No
55IL33interleukin 33 [Source:HGNC Symbol;Acc:HGNC:16028]136780.0000.5470No
56HSD11B1hydroxysteroid 11-beta dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:5208]142730.0000.5310No
57EPB41L4Berythrocyte membrane protein band 4.1 like 4B [Source:HGNC Symbol;Acc:HGNC:19818]149470.0000.5128No
58G0S2G0/G1 switch 2 [Source:HGNC Symbol;Acc:HGNC:30229]157200.0000.4919No
59PRR7-AS1PRR7 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:27961]170590.0000.4558No
60SRSF12serine and arginine rich splicing factor 12 [Source:HGNC Symbol;Acc:HGNC:21220]174890.0000.4442No
61MMP1matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155]191280.0000.3999No
62MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]191320.0000.3998No
63CXCL8C-X-C motif chemokine ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]194820.0000.3904No
64CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]194910.0000.3902No
65CXCL3C-X-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:4604]194930.0000.3902No
66CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]194940.0000.3902No
67CXCL5C-X-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642]194960.0000.3901No
68LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]206410.0000.3592No
69C2CD4BC2 calcium dependent domain containing 4B [Source:HGNC Symbol;Acc:HGNC:33628]216160.0000.3329No
70FGF2fibroblast growth factor 2 [Source:HGNC Symbol;Acc:HGNC:3676]224430.0000.3106No
71TESCtescalcin [Source:HGNC Symbol;Acc:HGNC:26065]252200.0000.2356No
72IFNEinterferon epsilon [Source:HGNC Symbol;Acc:HGNC:18163]255360.0000.2271No
73KYNUkynureninase [Source:HGNC Symbol;Acc:HGNC:6469]268860.0000.1906No
74TSLPthymic stromal lymphopoietin [Source:HGNC Symbol;Acc:HGNC:30743]269620.0000.1886No
75CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]280110.0000.1603No
76STC1stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]28887-0.2030.1382No
77SLC16A6solute carrier family 16 member 6 [Source:HGNC Symbol;Acc:HGNC:10927]29284-0.3080.1299No
78TCIMtranscriptional and immune response regulator [Source:HGNC Symbol;Acc:HGNC:1357]29755-0.4310.1206No
79IRAK3interleukin 1 receptor associated kinase 3 [Source:HGNC Symbol;Acc:HGNC:17020]29814-0.4440.1225No
80PLA2G4Aphospholipase A2 group IVA [Source:HGNC Symbol;Acc:HGNC:9035]32204-1.1780.0671No
81RNF128ring finger protein 128 [Source:HGNC Symbol;Acc:HGNC:21153]34217-2.0340.0287No
82GPR68G protein-coupled receptor 68 [Source:HGNC Symbol;Acc:HGNC:4519]34993-2.4860.0271No
83LRRC8Bleucine rich repeat containing 8 VRAC subunit B [Source:HGNC Symbol;Acc:HGNC:30692]36414-3.7760.0183No
Table: GSEA details [plain text format]



Fig 2: GHANDHI_BYSTANDER_IRRADIATION_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GHANDHI_BYSTANDER_IRRADIATION_UP: Random ES distribution   
Gene set null distribution of ES for GHANDHI_BYSTANDER_IRRADIATION_UP