Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetLEE_EARLY_T_LYMPHOCYTE_UP
Enrichment Score (ES)-0.8342507
Normalized Enrichment Score (NES)-1.7341788
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: LEE_EARLY_T_LYMPHOCYTE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RAPGEF5Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]14951.818-0.0333No
2AEBP1AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]17651.570-0.0344No
3SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]20331.408-0.0362No
4SYKspleen associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11491]24031.186-0.0415No
5CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]33450.744-0.0640No
6GSE1Gse1 coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:28979]46780.382-0.0986No
7MPP1membrane palmitoylated protein 1 [Source:HGNC Symbol;Acc:HGNC:7219]49280.308-0.1041No
8LETM1leucine zipper and EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:6556]53000.185-0.1134No
9GALNT7polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]53450.175-0.1139No
10MIR646HGMIR646 host gene [Source:HGNC Symbol;Acc:HGNC:27659]77290.000-0.1783No
11HHIPhedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]78040.000-0.1803No
12TNFRSF21TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469]89780.000-0.2121No
13PON1paraoxonase 1 [Source:HGNC Symbol;Acc:HGNC:9204]105700.000-0.2551No
14CRNDEcolorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]112120.000-0.2724No
15RAG1recombination activating 1 [Source:HGNC Symbol;Acc:HGNC:9831]123410.000-0.3029No
16SCRN1secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]139550.000-0.3465No
17MZB1marginal zone B and B1 cell specific protein [Source:HGNC Symbol;Acc:HGNC:30125]145760.000-0.3633No
18PALLDpalladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]166290.000-0.4188No
19PALM2AKAP2PALM2 and AKAP2 fusion [Source:HGNC Symbol;Acc:HGNC:33529]179280.000-0.4539No
20MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]191990.000-0.4882No
21CPVLcarboxypeptidase vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]206460.000-0.5273No
22CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]210140.000-0.5372No
23NLGN4Xneuroligin 4 X-linked [Source:HGNC Symbol;Acc:HGNC:14287]225370.000-0.5784No
24ARPP21cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]257060.000-0.6640No
25TSHRthyroid stimulating hormone receptor [Source:HGNC Symbol;Acc:HGNC:12373]269270.000-0.6970No
26FAM72Cfamily with sequence similarity 72 member C [Source:HGNC Symbol;Acc:HGNC:30602]272280.000-0.7051No
27CD1ECD1e molecule [Source:HGNC Symbol;Acc:HGNC:1638]278820.000-0.7228No
28CD1BCD1b molecule [Source:HGNC Symbol;Acc:HGNC:1635]278850.000-0.7229No
29CD1ACD1a molecule [Source:HGNC Symbol;Acc:HGNC:1634]278860.000-0.7229No
30CD99CD99 molecule (Xg blood group) [Source:HGNC Symbol;Acc:HGNC:7082]280360.000-0.7269No
31RUFY3RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30285]29311-0.316-0.7601No
32FAIMFas apoptotic inhibitory molecule [Source:HGNC Symbol;Acc:HGNC:18703]29369-0.331-0.7603No
33CENPWcentromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]30192-0.537-0.7805No
34GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]31053-0.790-0.8006No
35CDC25Acell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]31237-0.841-0.8023No
36GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]31978-1.085-0.8181No
37TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32088-1.131-0.8166No
38TMSB15Athymosin beta 15a [Source:HGNC Symbol;Acc:HGNC:30744]32314-1.227-0.8179No
39DNTTDNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]32681-1.312-0.8226No
40PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]32691-1.316-0.8177No
41CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]33303-1.578-0.8281Yes
42TUBB4Btubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771]33365-1.603-0.8235Yes
43CEP70centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]33417-1.627-0.8185Yes
44NSD2nuclear receptor binding SET domain protein 2 [Source:HGNC Symbol;Acc:HGNC:12766]33740-1.773-0.8202Yes
45GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]33978-1.901-0.8192Yes
46LDLRAD4low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1224]34349-2.121-0.8209Yes
47MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34480-2.139-0.8161Yes
48DIAPH3diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]34754-2.318-0.8144Yes
49MCM10minichromosome maintenance 10 replication initiation factor [Source:HGNC Symbol;Acc:HGNC:18043]34813-2.360-0.8067Yes
50CENPUcentromere protein U [Source:HGNC Symbol;Acc:HGNC:21348]34869-2.401-0.7988Yes
51RCAN1regulator of calcineurin 1 [Source:HGNC Symbol;Acc:HGNC:3040]35012-2.493-0.7929Yes
52TUBBtubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]35477-2.816-0.7945Yes
53ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]35544-2.882-0.7850Yes
54DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35546-2.882-0.7737Yes
55GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]35585-2.932-0.7633Yes
56PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]35722-3.059-0.7550Yes
57MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]35740-3.078-0.7434Yes
58ATAD2ATPase family AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]35756-3.093-0.7317Yes
59UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]35837-3.176-0.7215Yes
60NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]35853-3.190-0.7094Yes
61CEP128centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]35887-3.245-0.6976Yes
62CXXC5CXXC finger protein 5 [Source:HGNC Symbol;Acc:HGNC:26943]35912-3.274-0.6854Yes
63KNL1kinetochore scaffold 1 [Source:HGNC Symbol;Acc:HGNC:24054]36014-3.351-0.6751Yes
64CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]36019-3.358-0.6620Yes
65PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36027-3.367-0.6491Yes
66TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]36054-3.383-0.6365Yes
67SGO2shugoshin 2 [Source:HGNC Symbol;Acc:HGNC:30812]36079-3.411-0.6238Yes
68DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]36080-3.411-0.6105Yes
69BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]36096-3.434-0.5975Yes
70KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]36110-3.445-0.5844Yes
71AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]36154-3.490-0.5719Yes
72BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36172-3.498-0.5586Yes
73UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]36288-3.614-0.5476Yes
74DSCC1DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]36297-3.622-0.5337Yes
75UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]36314-3.643-0.5199Yes
76RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]36360-3.688-0.5066Yes
77KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36388-3.732-0.4928Yes
78CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]36393-3.744-0.4782Yes
79NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]36508-3.891-0.4661Yes
80KIF15kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]36511-3.893-0.4509Yes
81HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]36512-3.898-0.4357Yes
82KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]36518-3.905-0.4206Yes
83KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]36526-3.918-0.4054Yes
84NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]36576-3.975-0.3912Yes
85PRR11proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]36581-3.976-0.3758Yes
86PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]36590-3.998-0.3603Yes
87BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36605-4.013-0.3450Yes
88FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]36619-4.031-0.3296Yes
89TFDP2transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]36624-4.032-0.3140Yes
90KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36668-4.079-0.2992Yes
91CEP55centrosomal protein 55 [Source:HGNC Symbol;Acc:HGNC:1161]36703-4.132-0.2839Yes
92CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36709-4.137-0.2679Yes
93OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]36718-4.146-0.2519Yes
94LRR1leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]36750-4.193-0.2363Yes
95RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36786-4.241-0.2207Yes
96MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]36795-4.256-0.2042Yes
97HMGB3high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]36819-4.299-0.1881Yes
98NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]36851-4.372-0.1718Yes
99ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]36876-4.426-0.1551Yes
100E2F2E2F transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3114]36882-4.430-0.1379Yes
101NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36883-4.431-0.1206Yes
102E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36887-4.439-0.1033Yes
103CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]36915-4.481-0.0865Yes
104NEIL3nei like DNA glycosylase 3 [Source:HGNC Symbol;Acc:HGNC:24573]36922-4.492-0.0691Yes
105TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]36941-4.548-0.0518Yes
106E2F7E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]36982-4.638-0.0348Yes
107CDCA2cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]37000-4.695-0.0169Yes
108MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]37062-4.9280.0008Yes
Table: GSEA details [plain text format]



Fig 2: LEE_EARLY_T_LYMPHOCYTE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: LEE_EARLY_T_LYMPHOCYTE_UP: Random ES distribution   
Gene set null distribution of ES for LEE_EARLY_T_LYMPHOCYTE_UP