Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetNEMETH_INFLAMMATORY_RESPONSE_LPS_UP
Enrichment Score (ES)0.89008117
Normalized Enrichment Score (NES)2.1927605
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1RNinterleukin 1 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:6000]154.9780.0233Yes
2PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]264.9530.0467Yes
3TNFRSF1BTNF receptor superfamily member 1B [Source:HGNC Symbol;Acc:HGNC:11917]774.7270.0679Yes
4ODC1ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:8109]874.6630.0899Yes
5BCL6BBCL6B transcription repressor [Source:HGNC Symbol;Acc:HGNC:1002]954.6450.1118Yes
6SLFN12schlafen family member 12 [Source:HGNC Symbol;Acc:HGNC:25500]1074.5990.1335Yes
7TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]1274.4450.1542Yes
8IRGMimmunity related GTPase M [Source:HGNC Symbol;Acc:HGNC:29597]1514.3380.1742Yes
9MARCKSL1MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]1814.2180.1936Yes
10RGS16regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]2024.1130.2126Yes
11BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]2044.1040.2322Yes
12FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]2084.0840.2516Yes
13SLFN12Lschlafen family member 12 like [Source:HGNC Symbol;Acc:HGNC:33920]2104.0780.2710Yes
14PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]2354.0120.2895Yes
15IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]2593.8970.3075Yes
16NFKB1nuclear factor kappa B subunit 1 [Source:HGNC Symbol;Acc:HGNC:7794]2623.8860.3259Yes
17GLRXglutaredoxin [Source:HGNC Symbol;Acc:HGNC:4330]2653.8770.3444Yes
18TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2673.8740.3628Yes
19STAT1signal transducer and activator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:11362]2713.8640.3812Yes
20GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]2723.8600.3996Yes
21SLC11A1solute carrier family 11 member 1 [Source:HGNC Symbol;Acc:HGNC:10907]2783.8400.4178Yes
22C3AR1complement C3a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1319]2903.8110.4356Yes
23CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]3053.7840.4533Yes
24IL1RL1interleukin 1 receptor like 1 [Source:HGNC Symbol;Acc:HGNC:5998]3193.7260.4707Yes
25CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]3223.7140.4884Yes
26SRGNserglycin [Source:HGNC Symbol;Acc:HGNC:9361]3373.6650.5055Yes
27GKglycerol kinase [Source:HGNC Symbol;Acc:HGNC:4289]3893.5150.5209Yes
28NFKBIANFKB inhibitor alpha [Source:HGNC Symbol;Acc:HGNC:7797]4133.4270.5366Yes
29CLEC4DC-type lectin domain family 4 member D [Source:HGNC Symbol;Acc:HGNC:14554]4423.3100.5516Yes
30TNIP1TNFAIP3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16903]4883.2460.5659Yes
31RHOCras homolog family member C [Source:HGNC Symbol;Acc:HGNC:669]4983.2320.5811Yes
32SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]5083.2060.5961Yes
33HCKHCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:4840]5343.1410.6104Yes
34CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]5433.1300.6251Yes
35TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]5883.0150.6383Yes
36MSR1macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]5913.0110.6526Yes
37TXNRD1thioredoxin reductase 1 [Source:HGNC Symbol;Acc:HGNC:12437]7162.8350.6628Yes
38ETS2ETS proto-oncogene 2, transcription factor [Source:HGNC Symbol;Acc:HGNC:3489]7332.7850.6757Yes
39IFRD1interferon related developmental regulator 1 [Source:HGNC Symbol;Acc:HGNC:5456]7442.7550.6885Yes
40PMLpromyelocytic leukemia [Source:HGNC Symbol;Acc:HGNC:9113]7502.7420.7015Yes
41STK10serine/threonine kinase 10 [Source:HGNC Symbol;Acc:HGNC:11388]7552.7320.7144Yes
42ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]8422.5840.7244Yes
43LCP2lymphocyte cytosolic protein 2 [Source:HGNC Symbol;Acc:HGNC:6529]9102.4670.7343Yes
44ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]9472.4110.7449Yes
45MYO10myosin X [Source:HGNC Symbol;Acc:HGNC:7593]9552.3900.7561Yes
46HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]9592.3860.7674Yes
47CLN3CLN3 lysosomal/endosomal transmembrane protein, battenin [Source:HGNC Symbol;Acc:HGNC:2074]10192.2840.7767Yes
48ACSL4acyl-CoA synthetase long chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]10552.2270.7864Yes
49MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]10852.1820.7960Yes
50TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]11382.1150.8047Yes
51SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]12962.0400.8101Yes
52RNF11ring finger protein 11 [Source:HGNC Symbol;Acc:HGNC:10056]13551.9690.8180Yes
53TPST1tyrosylprotein sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:12020]13671.9570.8270Yes
54ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]14241.8810.8345Yes
55CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]15521.7610.8394Yes
56JUNDJunD proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6206]16631.6770.8445Yes
57IER2immediate early response 2 [Source:HGNC Symbol;Acc:HGNC:28871]16861.6570.8518Yes
58EIF1eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:HGNC:3249]17281.6050.8583Yes
59DEGS1delta 4-desaturase, sphingolipid 1 [Source:HGNC Symbol;Acc:HGNC:13709]17661.5690.8648Yes
60HMGCR3-hydroxy-3-methylglutaryl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:5006]18411.5170.8700Yes
61APBB1IPamyloid beta precursor protein binding family B member 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:17379]19011.4630.8754Yes
62MLLT11MLLT11 transcription factor 7 cofactor [Source:HGNC Symbol;Acc:HGNC:16997]21881.3060.8739Yes
63MAP2K1mitogen-activated protein kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:6840]22481.2760.8784Yes
64CCL3C-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:10627]23121.2390.8826Yes
65SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]24101.1840.8856Yes
66WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]25281.1240.8878Yes
67SLC2A1solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]26781.0300.8887Yes
68RCN1reticulocalbin 1 [Source:HGNC Symbol;Acc:HGNC:9934]28010.9770.8901Yes
69TOP1DNA topoisomerase I [Source:HGNC Symbol;Acc:HGNC:11986]29990.8840.8890No
70SAP30Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]33850.7250.8820No
71FCGR2BFc fragment of IgG receptor IIb [Source:HGNC Symbol;Acc:HGNC:3618]35550.6610.8806No
72KPNA3karyopherin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6396]36420.6240.8813No
73MYADMmyeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]37220.5910.8819No
74CITED2Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 [Source:HGNC Symbol;Acc:HGNC:1987]37690.5740.8834No
75PIP5K1Bphosphatidylinositol-4-phosphate 5-kinase type 1 beta [Source:HGNC Symbol;Acc:HGNC:8995]46020.4060.8629No
76PRKCDprotein kinase C delta [Source:HGNC Symbol;Acc:HGNC:9399]49510.2980.8549No
77DAB2DAB adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:2662]55160.1310.8403No
78CCL23C-C motif chemokine ligand 23 [Source:HGNC Symbol;Acc:HGNC:10622]60280.0000.8265No
79TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]85630.0000.7580No
80SLPIsecretory leukocyte peptidase inhibitor [Source:HGNC Symbol;Acc:HGNC:11092]90220.0000.7456No
81IFI16interferon gamma inducible protein 16 [Source:HGNC Symbol;Acc:HGNC:5395]112590.0000.6852No
82LILRB4leukocyte immunoglobulin like receptor B4 [Source:HGNC Symbol;Acc:HGNC:6608]132820.0000.6306No
83CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]239190.0000.3432No
84MAPKAPK2MAPK activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]30590-0.6470.1660No
85LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]34180-2.0150.0786No
Table: GSEA details [plain text format]



Fig 2: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP: Random ES distribution   
Gene set null distribution of ES for NEMETH_INFLAMMATORY_RESPONSE_LPS_UP