Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetBMI1_DN_MEL18_DN.V1_UP
Enrichment Score (ES)0.51196784
Normalized Enrichment Score (NES)1.3450749
Nominal p-value0.014084507
FDR q-value0.13319068
FWER p-Value0.283
Table: GSEA Results Summary



Fig 1: Enrichment plot: BMI1_DN_MEL18_DN.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]164.9720.0264Yes
2CHST11carbohydrate sulfotransferase 11 [Source:HGNC Symbol;Acc:HGNC:17422]224.9590.0531Yes
3IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]284.9480.0797Yes
4FOSL1FOS like 1, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:13718]644.7950.1047Yes
5VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]824.7060.1297Yes
6PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]1314.4270.1524Yes
7ABCA1ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]1874.1980.1736Yes
8FAPfibroblast activation protein alpha [Source:HGNC Symbol;Acc:HGNC:3590]1914.1630.1960Yes
9SLC7A11solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]1944.1580.2184Yes
10PIM1Pim-1 proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:8986]1984.1300.2407Yes
11EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]2204.0610.2621Yes
12ITGA5integrin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6141]2244.0540.2839Yes
13GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]2254.0520.3058Yes
14ZC3H12Azinc finger CCCH-type containing 12A [Source:HGNC Symbol;Acc:HGNC:26259]2613.8910.3259Yes
15CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]2833.8290.3460Yes
16C3AR1complement C3a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1319]2903.8110.3665Yes
17TFECtranscription factor EC [Source:HGNC Symbol;Acc:HGNC:11754]4353.3290.3806Yes
18EHD1EH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:3242]6482.8710.3904Yes
19SIK1salt inducible kinase 1 [Source:HGNC Symbol;Acc:HGNC:11142]6572.8530.4056Yes
20PIEZO1piezo type mechanosensitive ion channel component 1 [Source:HGNC Symbol;Acc:HGNC:28993]8012.6440.4160Yes
21ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]9472.4110.4251Yes
22ADGBandroglobin [Source:HGNC Symbol;Acc:HGNC:21212]9572.3870.4378Yes
23RUSC2RUN and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23625]11002.1640.4456Yes
24CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]11012.1630.4573Yes
25NRP2neuropilin 2 [Source:HGNC Symbol;Acc:HGNC:8005]13142.0150.4625Yes
26IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]14111.8960.4702Yes
27INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]15871.7260.4748Yes
28TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]18991.4650.4743Yes
29SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]20331.4080.4783Yes
30ARL4AADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]23421.2230.4765Yes
31APBB2amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]23601.2130.4826Yes
32PODXLpodocalyxin like [Source:HGNC Symbol;Acc:HGNC:9171]23691.2080.4890Yes
33FJX1four-jointed box kinase 1 [Source:HGNC Symbol;Acc:HGNC:17166]25161.1280.4911Yes
34TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]25341.1210.4967Yes
35GAB2GRB2 associated binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14458]25931.0780.5010Yes
36LCP1lymphocyte cytosolic protein 1 [Source:HGNC Symbol;Acc:HGNC:6528]26751.0330.5044Yes
37DUSP10dual specificity phosphatase 10 [Source:HGNC Symbol;Acc:HGNC:3065]27720.9920.5071Yes
38SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]27910.9860.5120Yes
39KCNN4potassium calcium-activated channel subfamily N member 4 [Source:HGNC Symbol;Acc:HGNC:6293]30470.8600.5097No
40HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]32470.7790.5085No
41TNIP3TNFAIP3 interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:19315]35260.6710.5046No
42MICALL1MICAL like 1 [Source:HGNC Symbol;Acc:HGNC:29804]35750.6490.5069No
43COL7A1collagen type VII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2214]40150.4810.4976No
44KMT2Alysine methyltransferase 2A [Source:HGNC Symbol;Acc:HGNC:7132]44460.4590.4884No
45KLF7Kruppel like factor 7 [Source:HGNC Symbol;Acc:HGNC:6350]45880.4120.4868No
46TNFRSF8TNF receptor superfamily member 8 [Source:HGNC Symbol;Acc:HGNC:11923]46240.4010.4880No
47BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]47260.3690.4873No
48ZEB2zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]47790.3540.4878No
49VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]51840.2180.4781No
50BST1bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:HGNC:1118]53490.1740.4746No
51RREB1ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]57740.0560.4634No
52CDC42EP2CDC42 effector protein 2 [Source:HGNC Symbol;Acc:HGNC:16263]58390.0320.4618No
53FGF21fibroblast growth factor 21 [Source:HGNC Symbol;Acc:HGNC:3678]65620.0000.4423No
54ABLIM3actin binding LIM protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29132]67140.0000.4382No
55GREM1gremlin 1, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:2001]79300.0000.4053No
56TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]85630.0000.3882No
57MAP3K7CLMAP3K7 C-terminal like [Source:HGNC Symbol;Acc:HGNC:16457]89220.0000.3785No
58VLDLRvery low density lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:12698]92470.0000.3698No
59TNFRSF9TNF receptor superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11924]95180.0000.3624No
60KCNN3potassium calcium-activated channel subfamily N member 3 [Source:HGNC Symbol;Acc:HGNC:6292]95950.0000.3604No
61PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]96410.0000.3592No
62ADAM19ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197]96530.0000.3589No
63ADAM12ADAM metallopeptidase domain 12 [Source:HGNC Symbol;Acc:HGNC:190]96550.0000.3588No
64GFPT2glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]101270.0000.3461No
65ADM2adrenomedullin 2 [Source:HGNC Symbol;Acc:HGNC:28898]109040.0000.3251No
66LRRC15leucine rich repeat containing 15 [Source:HGNC Symbol;Acc:HGNC:20818]111810.0000.3176No
67PTHLHparathyroid hormone like hormone [Source:HGNC Symbol;Acc:HGNC:9607]114240.0000.3111No
68TEKTEK receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11724]124020.0000.2846No
69VNN1vanin 1 [Source:HGNC Symbol;Acc:HGNC:12705]125590.0000.2804No
70TACR3tachykinin receptor 3 [Source:HGNC Symbol;Acc:HGNC:11528]130370.0000.2675No
71GDF5growth differentiation factor 5 [Source:HGNC Symbol;Acc:HGNC:4220]132550.0000.2616No
72TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]136530.0000.2509No
73P2RX5purinergic receptor P2X 5 [Source:HGNC Symbol;Acc:HGNC:8536]139950.0000.2417No
74TNFAIP6TNF alpha induced protein 6 [Source:HGNC Symbol;Acc:HGNC:11898]153690.0000.2045No
75COL13A1collagen type XIII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2190]154340.0000.2028No
76HTR1D5-hydroxytryptamine receptor 1D [Source:HGNC Symbol;Acc:HGNC:5289]154930.0000.2012No
77COL16A1collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]164130.0000.1763No
78GALgalanin and GMAP prepropeptide [Source:HGNC Symbol;Acc:HGNC:4114]168510.0000.1645No
79TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170940.0000.1579No
80MGLLmonoglyceride lipase [Source:HGNC Symbol;Acc:HGNC:17038]171060.0000.1576No
81CSPG4chondroitin sulfate proteoglycan 4 [Source:HGNC Symbol;Acc:HGNC:2466]171530.0000.1564No
82FAM189A1family with sequence similarity 189 member A1 [Source:HGNC Symbol;Acc:HGNC:29075]172840.0000.1529No
83HAPLN1hyaluronan and proteoglycan link protein 1 [Source:HGNC Symbol;Acc:HGNC:2380]173800.0000.1503No
84MICAMHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:HGNC:7090]176500.0000.1430No
85PAPPApappalysin 1 [Source:HGNC Symbol;Acc:HGNC:8602]178640.0000.1373No
86CDH13cadherin 13 [Source:HGNC Symbol;Acc:HGNC:1753]187350.0000.1137No
87BMP5bone morphogenetic protein 5 [Source:HGNC Symbol;Acc:HGNC:1072]190960.0000.1040No
88MMP7matrix metallopeptidase 7 [Source:HGNC Symbol;Acc:HGNC:7174]191250.0000.1032No
89CXCL8C-X-C motif chemokine ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]194820.0000.0936No
90CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]194910.0000.0934No
91ARNTL2aryl hydrocarbon receptor nuclear translocator like 2 [Source:HGNC Symbol;Acc:HGNC:18984]198160.0000.0846No
92CPA4carboxypeptidase A4 [Source:HGNC Symbol;Acc:HGNC:15740]204050.0000.0687No
93NPPBnatriuretic peptide B [Source:HGNC Symbol;Acc:HGNC:7940]205790.0000.0640No
94LAMB3laminin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]206410.0000.0623No
95CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]214530.0000.0404No
96LSAMPlimbic system associated membrane protein [Source:HGNC Symbol;Acc:HGNC:6705]216790.0000.0343No
97WNT5BWnt family member 5B [Source:HGNC Symbol;Acc:HGNC:16265]217040.0000.0337No
98CLDN1claudin 1 [Source:HGNC Symbol;Acc:HGNC:2032]218190.0000.0306No
99HAS2hyaluronan synthase 2 [Source:HGNC Symbol;Acc:HGNC:4819]218920.0000.0286No
100PDCD1LG2programmed cell death 1 ligand 2 [Source:HGNC Symbol;Acc:HGNC:18731]226250.0000.0088No
101PLAURplasminogen activator, urokinase receptor [Source:HGNC Symbol;Acc:HGNC:9053]227320.0000.0059No
102ITGB8integrin subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]235310.000-0.0157No
103ITGB6integrin subunit beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]235340.000-0.0157No
104ITGA3integrin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6139]235370.000-0.0158No
105PAGE1PAGE family member 1 [Source:HGNC Symbol;Acc:HGNC:4107]236290.000-0.0182No
106SCML2Scm polycomb group protein like 2 [Source:HGNC Symbol;Acc:HGNC:10581]250140.000-0.0557No
107KRT75keratin 75 [Source:HGNC Symbol;Acc:HGNC:24431]268500.000-0.1054No
108STX1Asyntaxin 1A [Source:HGNC Symbol;Acc:HGNC:11433]28646-0.144-0.1532No
109NKAIN1sodium/potassium transporting ATPase interacting 1 [Source:HGNC Symbol;Acc:HGNC:25743]28926-0.212-0.1596No
110ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]29175-0.275-0.1648No
111SLC19A1solute carrier family 19 member 1 [Source:HGNC Symbol;Acc:HGNC:10937]29187-0.280-0.1636No
112ADGRE5adhesion G protein-coupled receptor E5 [Source:HGNC Symbol;Acc:HGNC:1711]29214-0.288-0.1627No
113ZNF639zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]29222-0.290-0.1613No
114TCIMtranscriptional and immune response regulator [Source:HGNC Symbol;Acc:HGNC:1357]29755-0.431-0.1734No
115C2CD2C2 calcium dependent domain containing 2 [Source:HGNC Symbol;Acc:HGNC:1266]29760-0.433-0.1712No
116ASPHaspartate beta-hydroxylase [Source:HGNC Symbol;Acc:HGNC:757]30137-0.537-0.1785No
117SLC6A9solute carrier family 6 member 9 [Source:HGNC Symbol;Acc:HGNC:11056]30371-0.576-0.1816No
118PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]30579-0.644-0.1838No
119JAG1jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188]31434-0.906-0.2020No
120SLC22A4solute carrier family 22 member 4 [Source:HGNC Symbol;Acc:HGNC:10968]31464-0.914-0.1978No
121TUFT1tuftelin 1 [Source:HGNC Symbol;Acc:HGNC:12422]31506-0.918-0.1940No
122INHBEinhibin subunit beta E [Source:HGNC Symbol;Acc:HGNC:24029]32175-1.167-0.2057No
123F3coagulation factor III, tissue factor [Source:HGNC Symbol;Acc:HGNC:3541]32447-1.232-0.2064No
124PIK3CGphosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma [Source:HGNC Symbol;Acc:HGNC:8978]32615-1.275-0.2040No
125TRIOtrio Rho guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12303]33122-1.500-0.2096No
126STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]33516-1.673-0.2112No
127C2CD2LC2CD2 like [Source:HGNC Symbol;Acc:HGNC:29000]33711-1.758-0.2070No
128MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]34090-1.959-0.2066No
129CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]34510-2.164-0.2062No
130FADS3fatty acid desaturase 3 [Source:HGNC Symbol;Acc:HGNC:3576]34666-2.270-0.1982No
131NT5E5'-nucleotidase ecto [Source:HGNC Symbol;Acc:HGNC:8021]34710-2.294-0.1869No
132LHFPL2LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]34909-2.431-0.1791No
133KIF21Bkinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]35191-2.638-0.1725No
134PLEKHO1pleckstrin homology domain containing O1 [Source:HGNC Symbol;Acc:HGNC:24310]35349-2.721-0.1620No
135ADMadrenomedullin [Source:HGNC Symbol;Acc:HGNC:259]35630-2.985-0.1534No
136ARL4CADP ribosylation factor like GTPase 4C [Source:HGNC Symbol;Acc:HGNC:698]35986-3.323-0.1451No
137OGFRL1opioid growth factor receptor like 1 [Source:HGNC Symbol;Acc:HGNC:21378]36044-3.376-0.1284No
138ATP13A2ATPase cation transporting 13A2 [Source:HGNC Symbol;Acc:HGNC:30213]36517-3.902-0.1200No
139WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36574-3.975-0.1001No
140ITGA4integrin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6140]36608-4.016-0.0793No
141NAV2neuron navigator 2 [Source:HGNC Symbol;Acc:HGNC:15997]36695-4.120-0.0593No
142CHST3carbohydrate sulfotransferase 3 [Source:HGNC Symbol;Acc:HGNC:1971]36726-4.149-0.0377No
143TMEM51transmembrane protein 51 [Source:HGNC Symbol;Acc:HGNC:25488]36826-4.322-0.0170No
144ADRB2adrenoceptor beta 2 [Source:HGNC Symbol;Acc:HGNC:286]36897-4.4590.0052No
Table: GSEA details [plain text format]



Fig 2: BMI1_DN_MEL18_DN.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: BMI1_DN_MEL18_DN.V1_UP: Random ES distribution   
Gene set null distribution of ES for BMI1_DN_MEL18_DN.V1_UP