Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetCSR_EARLY_UP.V1_UP
Enrichment Score (ES)0.45001903
Normalized Enrichment Score (NES)1.2195635
Nominal p-value0.0
FDR q-value0.1844455
FWER p-Value0.571
Table: GSEA Results Summary



Fig 1: Enrichment plot: CSR_EARLY_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]264.9530.0253Yes
2ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1644.2860.0441Yes
3PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]2354.0120.0633Yes
4PTPN12protein tyrosine phosphatase non-receptor type 12 [Source:HGNC Symbol;Acc:HGNC:9645]5053.2090.0729Yes
5SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]5183.1850.0893Yes
6BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]6302.9130.1016Yes
7ITPRIPL2ITPRIP like 2 [Source:HGNC Symbol;Acc:HGNC:27257]6342.9020.1168Yes
8CD274CD274 molecule [Source:HGNC Symbol;Acc:HGNC:17635]6762.8390.1306Yes
9ETS1ETS proto-oncogene 1, transcription factor [Source:HGNC Symbol;Acc:HGNC:3488]8062.6380.1410Yes
10ST3GAL1ST3 beta-galactoside alpha-2,3-sialyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10862]8152.6260.1546Yes
11MAP2K3mitogen-activated protein kinase kinase 3 [Source:HGNC Symbol;Acc:HGNC:6843]8362.5930.1677Yes
12KPNA4karyopherin subunit alpha 4 [Source:HGNC Symbol;Acc:HGNC:6397]8432.5840.1811Yes
13RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]9202.4580.1919Yes
14DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]9312.4360.2045Yes
15TENT4Aterminal nucleotidyltransferase 4A [Source:HGNC Symbol;Acc:HGNC:16705]9432.4160.2169Yes
16YWHAGtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma [Source:HGNC Symbol;Acc:HGNC:12852]9972.3160.2276Yes
17PXNpaxillin [Source:HGNC Symbol;Acc:HGNC:9718]10672.2080.2374Yes
18USP12ubiquitin specific peptidase 12 [Source:HGNC Symbol;Acc:HGNC:20485]10902.1770.2482Yes
19C21orf91chromosome 21 open reading frame 91 [Source:HGNC Symbol;Acc:HGNC:16459]10962.1710.2595Yes
20CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]11012.1630.2707Yes
21FRMD6FERM domain containing 6 [Source:HGNC Symbol;Acc:HGNC:19839]14371.8690.2715Yes
22SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]15591.7570.2774Yes
23NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]15751.7410.2862Yes
24INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]15871.7260.2950Yes
25PHLPP2PH domain and leucine rich repeat protein phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:29149]17441.5900.2991Yes
26RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]18081.5390.3055Yes
27FZD8frizzled class receptor 8 [Source:HGNC Symbol;Acc:HGNC:4046]19351.4460.3097Yes
28CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]19851.4450.3159Yes
29ACTR3actin related protein 3 [Source:HGNC Symbol;Acc:HGNC:170]20821.3720.3206Yes
30ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]21511.3290.3257Yes
31AMMECR1LAMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]21791.3100.3319Yes
32ZNF800zinc finger protein 800 [Source:HGNC Symbol;Acc:HGNC:27267]22991.2490.3352Yes
33GTPBP4GTP binding protein 4 [Source:HGNC Symbol;Acc:HGNC:21535]23091.2400.3415Yes
34SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]24051.1850.3451Yes
35PUM3pumilio RNA binding family member 3 [Source:HGNC Symbol;Acc:HGNC:29676]24811.1560.3492Yes
36ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]24991.1430.3547Yes
37FJX1four-jointed box kinase 1 [Source:HGNC Symbol;Acc:HGNC:17166]25161.1280.3602Yes
38PHF20L1PHD finger protein 20 like 1 [Source:HGNC Symbol;Acc:HGNC:24280]25481.1120.3652Yes
39TRMT10CtRNA methyltransferase 10C, mitochondrial RNase P subunit [Source:HGNC Symbol;Acc:HGNC:26022]26991.0190.3665Yes
40ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]27880.9870.3693Yes
41TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]27980.9810.3742Yes
42UBE2Nubiquitin conjugating enzyme E2 N [Source:HGNC Symbol;Acc:HGNC:12492]28070.9740.3791Yes
43NIP7nucleolar pre-rRNA processing protein NIP7 [Source:HGNC Symbol;Acc:HGNC:24328]28640.9430.3826Yes
44NOP16NOP16 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:26934]29070.9230.3863Yes
45MOB1BMOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]29610.8990.3896Yes
46TOP1DNA topoisomerase I [Source:HGNC Symbol;Acc:HGNC:11986]29990.8840.3932Yes
47BDKRB1bradykinin receptor B1 [Source:HGNC Symbol;Acc:HGNC:1029]30070.8820.3977Yes
48VTA1vesicle trafficking 1 [Source:HGNC Symbol;Acc:HGNC:20954]31050.8360.3994Yes
49HMGA1high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:HGNC:5010]31280.8280.4032Yes
50PCSK7proprotein convertase subtilisin/kexin type 7 [Source:HGNC Symbol;Acc:HGNC:8748]31900.7980.4057Yes
51PTP4A1protein tyrosine phosphatase 4A1 [Source:HGNC Symbol;Acc:HGNC:9634]32230.7880.4090Yes
52C8orf76chromosome 8 open reading frame 76 [Source:HGNC Symbol;Acc:HGNC:25924]32310.7850.4129Yes
53DNTTIP2deoxynucleotidyltransferase terminal interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:24013]32340.7830.4170Yes
54HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]32470.7790.4208Yes
55USP36ubiquitin specific peptidase 36 [Source:HGNC Symbol;Acc:HGNC:20062]32480.7790.4249Yes
56BRPF1bromodomain and PHD finger containing 1 [Source:HGNC Symbol;Acc:HGNC:14255]32530.7770.4288Yes
57TDGthymine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:11700]32590.7750.4328Yes
58MAPRE1microtubule associated protein RP/EB family member 1 [Source:HGNC Symbol;Acc:HGNC:6890]33030.7630.4356Yes
59MSANTD3Myb/SANT DNA binding domain containing 3 [Source:HGNC Symbol;Acc:HGNC:23370]33900.7230.4371Yes
60ELOCelongin C [Source:HGNC Symbol;Acc:HGNC:11617]34960.6850.4379Yes
61EMC6ER membrane protein complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:28430]35630.6560.4395Yes
62TFGtrafficking from ER to golgi regulator [Source:HGNC Symbol;Acc:HGNC:11758]35640.6560.4430Yes
63TLNRD1talin rod domain containing 1 [Source:HGNC Symbol;Acc:HGNC:13519]36850.6020.4429Yes
64SEC24ASEC24 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:10703]37340.5880.4447Yes
65NMD3NMD3 ribosome export adaptor [Source:HGNC Symbol;Acc:HGNC:24250]37680.5740.4468Yes
66LRRC8Aleucine rich repeat containing 8 VRAC subunit A [Source:HGNC Symbol;Acc:HGNC:19027]38100.5590.4486Yes
67DHX33DEAH-box helicase 33 [Source:HGNC Symbol;Acc:HGNC:16718]38640.5390.4500Yes
68TIMM23translocase of inner mitochondrial membrane 23 [Source:HGNC Symbol;Acc:HGNC:17312]41920.4730.4437No
69NUP54nucleoporin 54 [Source:HGNC Symbol;Acc:HGNC:17359]45820.4150.4353No
70PPIFpeptidylprolyl isomerase F [Source:HGNC Symbol;Acc:HGNC:9259]46220.4010.4364No
71B3GNT6UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:24141]46910.3780.4365No
72ATG101autophagy related 101 [Source:HGNC Symbol;Acc:HGNC:25679]48010.3470.4354No
73CHUKcomponent of inhibitor of nuclear factor kappa B kinase complex [Source:HGNC Symbol;Acc:HGNC:1974]48840.3220.4348No
74EIF4A1eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:HGNC:3282]49170.3110.4356No
75PTPN1protein tyrosine phosphatase non-receptor type 1 [Source:HGNC Symbol;Acc:HGNC:9642]49900.2830.4352No
76RNPS1RNA binding protein with serine rich domain 1 [Source:HGNC Symbol;Acc:HGNC:10080]50040.2770.4363No
77DDX21DExD-box helicase 21 [Source:HGNC Symbol;Acc:HGNC:2744]50260.2690.4371No
78SPRY2sprouty RTK signaling antagonist 2 [Source:HGNC Symbol;Acc:HGNC:11270]51210.2360.4358No
79CEMIP2cell migration inducing hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:11869]53130.1820.4316No
80RFKriboflavin kinase [Source:HGNC Symbol;Acc:HGNC:30324]53590.1710.4313No
81GNL2G protein nucleolar 2 [Source:HGNC Symbol;Acc:HGNC:29925]53980.1580.4311No
82DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]57530.0640.4218No
83NCLnucleolin [Source:HGNC Symbol;Acc:HGNC:7667]57890.0520.4211No
84DSPdesmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]58210.0400.4205No
85DOT1LDOT1 like histone lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:24948]59320.0070.4176No
86YOD1YOD1 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:25035]59490.0020.4172No
87HECTD2HECT domain E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:26736]98710.0000.3110No
88DCBLD1discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]119000.0000.2561No
89DDIT4LDNA damage inducible transcript 4 like [Source:HGNC Symbol;Acc:HGNC:30555]132510.0000.2196No
90GATA2GATA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4171]133780.0000.2162No
91IL11interleukin 11 [Source:HGNC Symbol;Acc:HGNC:5966]136310.0000.2093No
92TMEM200Atransmembrane protein 200A [Source:HGNC Symbol;Acc:HGNC:21075]162730.0000.1378No
93DLX2distal-less homeobox 2 [Source:HGNC Symbol;Acc:HGNC:2915]167230.0000.1257No
94GALgalanin and GMAP prepropeptide [Source:HGNC Symbol;Acc:HGNC:4114]168510.0000.1222No
95SNAI1snail family transcriptional repressor 1 [Source:HGNC Symbol;Acc:HGNC:11128]170840.0000.1160No
96TBX2T-box transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11597]197630.0000.0435No
97SCHIP1schwannomin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:15678]204470.0000.0250No
98FOXD1forkhead box D1 [Source:HGNC Symbol;Acc:HGNC:3802]205500.0000.0222No
99PLAURplasminogen activator, urokinase receptor [Source:HGNC Symbol;Acc:HGNC:9053]227320.000-0.0368No
100PLCH1phospholipase C eta 1 [Source:HGNC Symbol;Acc:HGNC:29185]231210.000-0.0473No
101SLC28A1solute carrier family 28 member 1 [Source:HGNC Symbol;Acc:HGNC:11001]231670.000-0.0486No
102SOX9SRY-box transcription factor 9 [Source:HGNC Symbol;Acc:HGNC:11204]232300.000-0.0502No
103ZNF697zinc finger protein 697 [Source:HGNC Symbol;Acc:HGNC:32034]261800.000-0.1301No
104CD33CD33 molecule [Source:HGNC Symbol;Acc:HGNC:1659]279340.000-0.1775No
105EHD4EH domain containing 4 [Source:HGNC Symbol;Acc:HGNC:3245]28447-0.088-0.1909No
106CBFBcore-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]28481-0.097-0.1913No
107DIS3DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]28651-0.145-0.1951No
108STC1stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]28887-0.203-0.2004No
109MYO9Bmyosin IXB [Source:HGNC Symbol;Acc:HGNC:7609]28891-0.204-0.1994No
110ILF2interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]29012-0.241-0.2014No
111UTP3UTP3 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24477]29051-0.244-0.2012No
112RGMBrepulsive guidance molecule BMP co-receptor b [Source:HGNC Symbol;Acc:HGNC:26896]29112-0.257-0.2014No
113TIMM22translocase of inner mitochondrial membrane 22 [Source:HGNC Symbol;Acc:HGNC:17317]29267-0.303-0.2040No
114THAP12THAP domain containing 12 [Source:HGNC Symbol;Acc:HGNC:9440]29403-0.340-0.2059No
115SRP72signal recognition particle 72 [Source:HGNC Symbol;Acc:HGNC:11303]29903-0.469-0.2169No
116AMD1adenosylmethionine decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:457]30277-0.548-0.2241No
117HPCAL1hippocalcin like 1 [Source:HGNC Symbol;Acc:HGNC:5145]30352-0.570-0.2231No
118EIF4A3eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]30354-0.571-0.2202No
119SMARCA4SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]30659-0.672-0.2249No
120POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]30775-0.703-0.2243No
121PHLDB1pleckstrin homology like domain family B member 1 [Source:HGNC Symbol;Acc:HGNC:23697]30795-0.709-0.2211No
122ZPBPzona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]30925-0.745-0.2206No
123GABPB2GA binding protein transcription factor subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:28441]31365-0.880-0.2279No
124RESTRE1 silencing transcription factor [Source:HGNC Symbol;Acc:HGNC:9966]31502-0.917-0.2268No
125SREK1IP1SREK1 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:26716]31575-0.944-0.2238No
126TXNDC12thioredoxin domain containing 12 [Source:HGNC Symbol;Acc:HGNC:24626]31705-0.994-0.2220No
127F3coagulation factor III, tissue factor [Source:HGNC Symbol;Acc:HGNC:3541]32447-1.232-0.2356No
128ZNF324zinc finger protein 324 [Source:HGNC Symbol;Acc:HGNC:14096]32477-1.232-0.2299No
129UAP1UDP-N-acetylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12457]32572-1.256-0.2259No
130SLC16A1solute carrier family 16 member 1 [Source:HGNC Symbol;Acc:HGNC:10922]33206-1.537-0.2349No
131IRAK1interleukin 1 receptor associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:6112]33354-1.595-0.2305No
132KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33400-1.624-0.2232No
133UGDHUDP-glucose 6-dehydrogenase [Source:HGNC Symbol;Acc:HGNC:12525]33419-1.628-0.2151No
134ZBTB2zinc finger and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:20868]33428-1.632-0.2068No
135POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]33676-1.740-0.2043No
136FAM107Bfamily with sequence similarity 107 member B [Source:HGNC Symbol;Acc:HGNC:23726]34323-2.097-0.2108No
137NT5E5'-nucleotidase ecto [Source:HGNC Symbol;Acc:HGNC:8021]34710-2.294-0.2092No
138VGLL4vestigial like family member 4 [Source:HGNC Symbol;Acc:HGNC:28966]34823-2.370-0.1997No
139NET1neuroepithelial cell transforming 1 [Source:HGNC Symbol;Acc:HGNC:14592]35391-2.749-0.2006No
140CTPS1CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]35422-2.773-0.1869No
141ELK3ETS transcription factor ELK3 [Source:HGNC Symbol;Acc:HGNC:3325]35602-2.950-0.1762No
142PANX1pannexin 1 [Source:HGNC Symbol;Acc:HGNC:8599]35754-3.091-0.1641No
143MRPS35mitochondrial ribosomal protein S35 [Source:HGNC Symbol;Acc:HGNC:16635]36025-3.363-0.1537No
144NRIP1nuclear receptor interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:8001]36115-3.451-0.1380No
145BCAR1BCAR1 scaffold protein, Cas family member [Source:HGNC Symbol;Acc:HGNC:971]36156-3.491-0.1207No
146ZBTB12zinc finger and BTB domain containing 12 [Source:HGNC Symbol;Acc:HGNC:19066]36383-3.724-0.1072No
147CSRNP2cysteine and serine rich nuclear protein 2 [Source:HGNC Symbol;Acc:HGNC:16006]36480-3.843-0.0896No
148SMTNsmoothelin [Source:HGNC Symbol;Acc:HGNC:11126]36507-3.890-0.0699No
149SLC37A4solute carrier family 37 member 4 [Source:HGNC Symbol;Acc:HGNC:4061]36633-4.039-0.0521No
150KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36641-4.049-0.0310No
151HLXH2.0 like homeobox [Source:HGNC Symbol;Acc:HGNC:4978]36663-4.073-0.0101No
152SHBSH2 domain containing adaptor protein B [Source:HGNC Symbol;Acc:HGNC:10838]36699-4.1230.0106No
Table: GSEA details [plain text format]



Fig 2: CSR_EARLY_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CSR_EARLY_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for CSR_EARLY_UP.V1_UP