Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetCSR_LATE_UP.V1_UP
Enrichment Score (ES)-0.6326007
Normalized Enrichment Score (NES)-1.3666627
Nominal p-value0.0032327587
FDR q-value0.1709219
FWER p-Value0.735
Table: GSEA Results Summary



Fig 1: Enrichment plot: CSR_LATE_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]734.7500.0166No
2VEGFCvascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]824.7060.0347No
3PARP11poly(ADP-ribose) polymerase family member 11 [Source:HGNC Symbol;Acc:HGNC:1186]2344.0140.0463No
4MT1Gmetallothionein 1G [Source:HGNC Symbol;Acc:HGNC:7399]4773.2760.0525No
5MT2Ametallothionein 2A [Source:HGNC Symbol;Acc:HGNC:7406]6392.8900.0595No
6MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]10852.1820.0559No
7CRISPLD2cysteine rich secretory protein LCCL domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25248]11012.1630.0640No
8TAGLN3transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]12162.0750.0690No
9IL7Rinterleukin 7 receptor [Source:HGNC Symbol;Acc:HGNC:6024]14111.8960.0711No
10EML1EMAP like 1 [Source:HGNC Symbol;Acc:HGNC:3330]14531.8520.0773No
11RPF2ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]17001.6450.0770No
12WSB2WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]19231.4530.0767No
13GTF3C6general transcription factor IIIC subunit 6 [Source:HGNC Symbol;Acc:HGNC:20872]19571.4460.0814No
14METMET proto-oncogene, receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:7029]20371.4050.0848No
15EEF1E1eukaryotic translation elongation factor 1 epsilon 1 [Source:HGNC Symbol;Acc:HGNC:3212]21501.3300.0869No
16PSMD14proteasome 26S subunit, non-ATPase 14 [Source:HGNC Symbol;Acc:HGNC:16889]25761.0920.0797No
17ASB6ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:HGNC:17181]26821.0290.0809No
18ST3GAL4ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:10864]31140.8340.0724No
19MAPRE1microtubule associated protein RP/EB family member 1 [Source:HGNC Symbol;Acc:HGNC:6890]33030.7630.0703No
20EIF5Aeukaryotic translation initiation factor 5A [Source:HGNC Symbol;Acc:HGNC:3300]33420.7460.0722No
21FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]33630.7340.0745No
22ELOCelongin C [Source:HGNC Symbol;Acc:HGNC:11617]34960.6850.0736No
23FARSBphenylalanyl-tRNA synthetase subunit beta [Source:HGNC Symbol;Acc:HGNC:17800]35770.6480.0740No
24AHSA1activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]36230.6330.0752No
25PSMD2proteasome 26S subunit, non-ATPase 2 [Source:HGNC Symbol;Acc:HGNC:9559]37550.5800.0740No
26PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]37800.5700.0755No
27MT1Lmetallothionein 1L, pseudogene [Source:HGNC Symbol;Acc:HGNC:7404]41080.4730.0685No
28MT1Hmetallothionein 1H [Source:HGNC Symbol;Acc:HGNC:7400]43200.4730.0647No
29MT1Bmetallothionein 1B [Source:HGNC Symbol;Acc:HGNC:7394]44070.4690.0642No
30PSMC3proteasome 26S subunit, ATPase 3 [Source:HGNC Symbol;Acc:HGNC:9549]44800.4490.0640No
31JPT1Jupiter microtubule associated homolog 1 [Source:HGNC Symbol;Acc:HGNC:14569]46890.3780.0598No
32DNAJB11DnaJ heat shock protein family (Hsp40) member B11 [Source:HGNC Symbol;Acc:HGNC:14889]48100.3440.0579No
33HERC4HECT and RLD domain containing E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:24521]48190.3430.0590No
34LYARLy1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]50360.2640.0542No
35SNRPA1small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:HGNC:11152]51990.2130.0507No
36HYPKhuntingtin interacting protein K [Source:HGNC Symbol;Acc:HGNC:18418]52600.1980.0498No
37MYH1myosin heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:7567]54050.1560.0465No
38PDLIM5PDZ and LIM domain 5 [Source:HGNC Symbol;Acc:HGNC:17468]56380.0970.0406No
39TPM2tropomyosin 2 [Source:HGNC Symbol;Acc:HGNC:12011]58810.0190.0341No
40NETO2neuropilin and tolloid like 2 [Source:HGNC Symbol;Acc:HGNC:14644]69550.0000.0051No
41GREM2gremlin 2, DAN family BMP antagonist [Source:HGNC Symbol;Acc:HGNC:17655]79310.000-0.0213No
42SSTR1somatostatin receptor 1 [Source:HGNC Symbol;Acc:HGNC:11330]114150.000-0.1157No
43IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]115610.000-0.1196No
44DCBLD1discoidin, CUB and LCCL domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21479]119000.000-0.1287No
45TMEM130transmembrane protein 130 [Source:HGNC Symbol;Acc:HGNC:25429]133000.000-0.1666No
46KISS1KiSS-1 metastasis suppressor [Source:HGNC Symbol;Acc:HGNC:6341]142420.000-0.1921No
47MBL2mannose binding lectin 2 [Source:HGNC Symbol;Acc:HGNC:6922]155050.000-0.2263No
48BEX1brain expressed X-linked 1 [Source:HGNC Symbol;Acc:HGNC:1036]165160.000-0.2536No
49TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170940.000-0.2693No
50SERPINB7serpin family B member 7 [Source:HGNC Symbol;Acc:HGNC:13902]177930.000-0.2882No
51CXCL12C-X-C motif chemokine ligand 12 [Source:HGNC Symbol;Acc:HGNC:10672]189350.000-0.3191No
52MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]191320.000-0.3244No
53NKX2-1NK2 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11825]192240.000-0.3268No
54CXCL6C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643]194770.000-0.3337No
55SAMD11sterile alpha motif domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28706]202870.000-0.3556No
56ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]232530.000-0.4359No
57TRPC3transient receptor potential cation channel subfamily C member 3 [Source:HGNC Symbol;Acc:HGNC:12335]247410.000-0.4761No
58SLC16A5solute carrier family 16 member 5 [Source:HGNC Symbol;Acc:HGNC:10926]261910.000-0.5154No
59C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]267540.000-0.5306No
60KRT25keratin 25 [Source:HGNC Symbol;Acc:HGNC:30839]267790.000-0.5312No
61KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]268280.000-0.5325No
62CYP4B1cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]270830.000-0.5394No
63SNORD22small nucleolar RNA, C/D box 22 [Source:HGNC Symbol;Acc:HGNC:10145]272020.000-0.5426No
64EIF3Beukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]28207-0.025-0.5697No
65YEATS4YEATS domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24859]28252-0.040-0.5707No
66NUP88nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]28287-0.051-0.5715No
67PGM2phosphoglucomutase 2 [Source:HGNC Symbol;Acc:HGNC:8906]28289-0.053-0.5713No
68PRMT5protein arginine methyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:10894]28290-0.053-0.5711No
69CBFBcore-binding factor subunit beta [Source:HGNC Symbol;Acc:HGNC:1539]28481-0.097-0.5759No
70IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]28510-0.107-0.5762No
71LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]28624-0.140-0.5787No
72DRAP1DR1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:3019]28814-0.187-0.5831No
73FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]28875-0.200-0.5839No
74CDH2cadherin 2 [Source:HGNC Symbol;Acc:HGNC:1759]28918-0.211-0.5843No
75ILF2interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]29012-0.241-0.5858No
76ARHGEF1Rho guanine nucleotide exchange factor 1 [Source:HGNC Symbol;Acc:HGNC:681]29013-0.241-0.5849No
77SMSspermine synthase [Source:HGNC Symbol;Acc:HGNC:11123]29095-0.252-0.5861No
78TRPC4transient receptor potential cation channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:12336]29325-0.321-0.5910No
79TEX30testis expressed 30 [Source:HGNC Symbol;Acc:HGNC:25188]29361-0.329-0.5907No
80KIFBPkinesin family binding protein [Source:HGNC Symbol;Acc:HGNC:23419]29407-0.342-0.5906No
81SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]29448-0.354-0.5903No
82EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]29468-0.358-0.5894No
83CIAPIN1cytokine induced apoptosis inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:28050]29650-0.401-0.5927No
84TOMM34translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]29666-0.407-0.5916No
85UTP18UTP18 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]30063-0.516-0.6003No
86NOC2LNOC2 like nucleolar associated transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:24517]30095-0.524-0.5991No
87PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]30314-0.559-0.6028No
88ACTL6Aactin like 6A [Source:HGNC Symbol;Acc:HGNC:24124]30336-0.565-0.6012No
89HAUS2HAUS augmin like complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25530]30340-0.567-0.5990No
90POLE3DNA polymerase epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:13546]30775-0.703-0.6080No
91YIPF3Yip1 domain family member 3 [Source:HGNC Symbol;Acc:HGNC:21023]30987-0.762-0.6108No
92NUDCD1NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]31263-0.850-0.6149No
93NUDCnuclear distribution C, dynein complex regulator [Source:HGNC Symbol;Acc:HGNC:8045]31268-0.852-0.6117No
94TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]31282-0.856-0.6087No
95COPS3COP9 signalosome subunit 3 [Source:HGNC Symbol;Acc:HGNC:2239]31439-0.907-0.6094No
96HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]31980-1.085-0.6198No
97DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]32455-1.232-0.6278Yes
98SLC25A11solute carrier family 25 member 11 [Source:HGNC Symbol;Acc:HGNC:10981]32512-1.234-0.6245Yes
99RAD18RAD18 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:18278]32520-1.236-0.6199Yes
100NDC1NDC1 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:25525]32592-1.264-0.6168Yes
101CDK5cyclin dependent kinase 5 [Source:HGNC Symbol;Acc:HGNC:1774]32693-1.317-0.6144Yes
102TUBA4Atubulin alpha 4a [Source:HGNC Symbol;Acc:HGNC:12407]33087-1.487-0.6192Yes
103PPP5Cprotein phosphatase 5 catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9322]33188-1.526-0.6160Yes
104AP1S2adaptor related protein complex 1 subunit sigma 2 [Source:HGNC Symbol;Acc:HGNC:560]33229-1.545-0.6110Yes
105CCND3cyclin D3 [Source:HGNC Symbol;Acc:HGNC:1585]33249-1.554-0.6055Yes
106CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]33303-1.578-0.6008Yes
107HMGB1high mobility group box 1 [Source:HGNC Symbol;Acc:HGNC:4983]33349-1.593-0.5958Yes
108ZNF367zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]33368-1.604-0.5900Yes
109CMC2C-X9-C motif containing 2 [Source:HGNC Symbol;Acc:HGNC:24447]33380-1.609-0.5840Yes
110CCDC34coiled-coil domain containing 34 [Source:HGNC Symbol;Acc:HGNC:25079]33515-1.671-0.5811Yes
111LMNB2lamin B2 [Source:HGNC Symbol;Acc:HGNC:6638]33519-1.675-0.5747Yes
112KATNAL1katanin catalytic subunit A1 like 1 [Source:HGNC Symbol;Acc:HGNC:28361]33562-1.700-0.5692Yes
113CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]33578-1.707-0.5629Yes
114POLR3KRNA polymerase III subunit K [Source:HGNC Symbol;Acc:HGNC:14121]33789-1.802-0.5615Yes
115FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33804-1.813-0.5548Yes
116BHLHE40basic helix-loop-helix family member e40 [Source:HGNC Symbol;Acc:HGNC:1046]33922-1.880-0.5507Yes
117ZWILCHzwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]34002-1.913-0.5454Yes
118PDCL3phosducin like 3 [Source:HGNC Symbol;Acc:HGNC:28860]34066-1.946-0.5395Yes
119MT1Fmetallothionein 1F [Source:HGNC Symbol;Acc:HGNC:7398]34090-1.959-0.5324Yes
120MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]34258-2.058-0.5289Yes
121TUBG1tubulin gamma 1 [Source:HGNC Symbol;Acc:HGNC:12417]34358-2.126-0.5233Yes
122MTHFD1methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:7432]34479-2.139-0.5182Yes
123SLF1SMC5-SMC6 complex localization factor 1 [Source:HGNC Symbol;Acc:HGNC:25408]34907-2.431-0.5203Yes
124MAZMYC associated zinc finger protein [Source:HGNC Symbol;Acc:HGNC:6914]34977-2.466-0.5125Yes
125PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35069-2.538-0.5051Yes
126MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]35150-2.598-0.4971Yes
127TRIP13thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]35157-2.606-0.4871Yes
128DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]35322-2.698-0.4810Yes
129CDC7cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]35348-2.720-0.4711Yes
130EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]35361-2.726-0.4607Yes
131CTPS1CTP synthase 1 [Source:HGNC Symbol;Acc:HGNC:2519]35422-2.773-0.4515Yes
132UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]35639-2.996-0.4457Yes
133GINS3GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]35647-3.009-0.4341Yes
134TCF19transcription factor 19 [Source:HGNC Symbol;Acc:HGNC:11629]35779-3.118-0.4255Yes
135UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]35837-3.176-0.4146Yes
136SLC16A3solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924]35864-3.203-0.4028Yes
137ITGA6integrin subunit alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]35891-3.250-0.3909Yes
138CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]35926-3.289-0.3789Yes
139FAM216Afamily with sequence similarity 216 member A [Source:HGNC Symbol;Acc:HGNC:30180]35956-3.322-0.3668Yes
140SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]35958-3.323-0.3538Yes
141NMBneuromedin B [Source:HGNC Symbol;Acc:HGNC:7842]35989-3.324-0.3416Yes
142PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36027-3.367-0.3295Yes
143GYS1glycogen synthase 1 [Source:HGNC Symbol;Acc:HGNC:4706]36034-3.370-0.3165Yes
144KCNC4potassium voltage-gated channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:6236]36070-3.397-0.3042Yes
145POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36128-3.460-0.2922Yes
146PAICSphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase [Source:HGNC Symbol;Acc:HGNC:8587]36160-3.493-0.2794Yes
147CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]36163-3.495-0.2658Yes
148CHEK2checkpoint kinase 2 [Source:HGNC Symbol;Acc:HGNC:16627]36178-3.510-0.2525Yes
149HIP1huntingtin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:4913]36234-3.545-0.2402Yes
150UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]36314-3.643-0.2281Yes
151ANLNanillin actin binding protein [Source:HGNC Symbol;Acc:HGNC:14082]36582-3.982-0.2198Yes
152CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]36584-3.986-0.2042Yes
153MYBL2MYB proto-oncogene like 2 [Source:HGNC Symbol;Acc:HGNC:7548]36588-3.994-0.1887Yes
154BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36605-4.013-0.1735Yes
155ALKBH7alkB homolog 7 [Source:HGNC Symbol;Acc:HGNC:21306]36665-4.076-0.1592Yes
156KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36747-4.186-0.1450Yes
157GMNNgeminin DNA replication inhibitor [Source:HGNC Symbol;Acc:HGNC:17493]36753-4.198-0.1288Yes
158RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36786-4.241-0.1131Yes
159FAM83Dfamily with sequence similarity 83 member D [Source:HGNC Symbol;Acc:HGNC:16122]36793-4.254-0.0966Yes
160CLSPNclaspin [Source:HGNC Symbol;Acc:HGNC:19715]36808-4.294-0.0802Yes
161FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36833-4.338-0.0640Yes
162S1PR1sphingosine-1-phosphate receptor 1 [Source:HGNC Symbol;Acc:HGNC:3165]36837-4.349-0.0471Yes
163TSPAN13tetraspanin 13 [Source:HGNC Symbol;Acc:HGNC:21643]36862-4.397-0.0305Yes
164NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36883-4.431-0.0138Yes
165FANCAFA complementation group A [Source:HGNC Symbol;Acc:HGNC:3582]37082-4.9610.0002Yes
Table: GSEA details [plain text format]



Fig 2: CSR_LATE_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CSR_LATE_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for CSR_LATE_UP.V1_UP