Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.41535518
Normalized Enrichment Score (NES)1.1303236
Nominal p-value0.06153846
FDR q-value0.23374873
FWER p-Value0.845
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]594.8190.0193Yes
2SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]1354.4080.0364Yes
3ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]1484.3520.0549Yes
4GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]1544.3280.0735Yes
5ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]1574.3120.0922Yes
6ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1644.2860.1106Yes
7EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]2204.0610.1267Yes
8SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2433.9760.1433Yes
9CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]3053.7840.1581Yes
10MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]3133.7410.1741Yes
11JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]3773.5490.1878Yes
12BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]3953.4930.2025Yes
13TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]5213.1700.2128Yes
14TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]5483.1220.2256Yes
15ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]5623.0820.2386Yes
16UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]5873.0160.2511Yes
17ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]7532.7350.2584Yes
18LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]9482.4090.2636Yes
19STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]9512.3970.2740Yes
20ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]10172.2900.2821Yes
21NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]10352.2640.2915Yes
22TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]12812.0580.2938Yes
23RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]12972.0380.3022Yes
24ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]14921.8200.3048Yes
25MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]15021.8040.3124Yes
26ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]15301.7890.3194Yes
27SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]15591.7570.3263Yes
28NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]15751.7410.3334Yes
29GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]16021.7170.3402Yes
30KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]16801.6650.3453Yes
31UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]17551.5800.3501Yes
32LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]18191.5280.3551Yes
33LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]18921.4700.3595Yes
34PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]18971.4670.3657Yes
35TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]18991.4650.3721Yes
36CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]19851.4450.3760Yes
37RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]19961.4350.3820Yes
38C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]20461.3950.3867Yes
39BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]20621.3850.3923Yes
40BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]20911.3670.3974Yes
41FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]23751.2050.3950Yes
42SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]24051.1850.3994Yes
43FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]24351.1720.4036Yes
44WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]25281.1240.4060Yes
45ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]27351.0100.4048Yes
46TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]27980.9810.4074Yes
47BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]28060.9740.4114Yes
48TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]28170.9670.4154Yes
49ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]32330.7830.4075No
50TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]32760.7680.4097No
51DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]34460.7020.4082No
52MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]35450.6650.4084No
53GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]37470.5830.4055No
54MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]38550.5430.4049No
55RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]38860.5280.4064No
56NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]39050.5190.4082No
57ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]39470.5090.4093No
58APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]43460.4730.4005No
59NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]43870.4730.4015No
60SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]44570.4550.4016No
61HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]44740.4500.4031No
62PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]45260.4310.4036No
63UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]45440.4260.4050No
64LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]45680.4190.4062No
65STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]46120.4040.4068No
66MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]47290.3670.4052No
67RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]49810.2880.3997No
68PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]50230.2700.3997No
69USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]50950.2460.3989No
70EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]51260.2360.3991No
71BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]52060.2120.3979No
72EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]54040.1570.3932No
73NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]56490.0930.3870No
74RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]56750.0880.3867No
75UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]58100.0430.3833No
76SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]58590.0250.3821No
77ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]62880.0000.3705No
78TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]83170.0000.3155No
79DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]88690.0000.3006No
80C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]90150.0000.2967No
81ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]94370.0000.2853No
82NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]95790.0000.2815No
83CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]107160.0000.2507No
84ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]112540.0000.2361No
85IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]115610.0000.2279No
86PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]117790.0000.2220No
87CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]120870.0000.2137No
88TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]123390.0000.2069No
89GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]126360.0000.1988No
90GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]127640.0000.1954No
91ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]131100.0000.1861No
92TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]133130.0000.1806No
93SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]135490.0000.1742No
94TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]136530.0000.1714No
95TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]141190.0000.1588No
96SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]158450.0000.1121No
97FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]169250.0000.0829No
98RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]169270.0000.0829No
99VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]172890.0000.0731No
100PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]176090.0000.0644No
101DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]184840.0000.0408No
102BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]190980.0000.0242No
103FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]205490.000-0.0151No
104LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]206340.000-0.0174No
105LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]208860.000-0.0242No
106ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]230020.000-0.0815No
107GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]239280.000-0.1065No
108AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]244340.000-0.1202No
109RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]250440.000-0.1367No
110INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]250580.000-0.1371No
111TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]252160.000-0.1413No
112KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]253660.000-0.1453No
113SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]261890.000-0.1676No
114C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]267540.000-0.1829No
115CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]278620.000-0.2129No
116BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]28143-0.008-0.2204No
117PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]28146-0.009-0.2204No
118MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]28610-0.136-0.2324No
119FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]28627-0.140-0.2322No
120LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]28681-0.153-0.2330No
121RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]28841-0.195-0.2365No
122ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]29175-0.275-0.2443No
123FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]29278-0.306-0.2457No
124GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]29384-0.335-0.2471No
125FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]29653-0.402-0.2526No
126EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]29900-0.469-0.2573No
127ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]29909-0.471-0.2554No
128MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]29982-0.495-0.2552No
129SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]30400-0.585-0.2640No
130VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]30691-0.682-0.2689No
131PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]30725-0.690-0.2668No
132B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]30871-0.734-0.2676No
133MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]31531-0.928-0.2814No
134VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]31563-0.941-0.2781No
135DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]31657-0.977-0.2764No
136DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]31674-0.982-0.2726No
137ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]31880-1.051-0.2736No
138DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]32059-1.117-0.2736No
139DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]32194-1.173-0.2721No
140CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]32323-1.231-0.2703No
141MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]32540-1.241-0.2707No
142DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]33010-1.454-0.2771No
143REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]33031-1.466-0.2713No
144CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]33143-1.505-0.2678No
145KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33400-1.624-0.2677No
146CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]33782-1.800-0.2702No
147DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]34109-1.970-0.2705No
148LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]34180-2.015-0.2637No
149MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]34258-2.058-0.2568No
150RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]34266-2.060-0.2481No
151NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]34288-2.070-0.2397No
152RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]34365-2.127-0.2325No
153SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]34608-2.237-0.2294No
154EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]34618-2.242-0.2199No
155MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]34898-2.421-0.2170No
156AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]34905-2.429-0.2066No
157ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]35023-2.508-0.1989No
158QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]35319-2.694-0.1952No
159ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]35363-2.727-0.1846No
160ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]35415-2.768-0.1740No
161ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]35424-2.774-0.1622No
162TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]36055-3.384-0.1646No
163PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]36127-3.459-0.1515No
164CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]36250-3.579-0.1393No
165TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]36325-3.667-0.1254No
166HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]36382-3.722-0.1108No
167TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]36538-3.921-0.0980No
168TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]36543-3.926-0.0811No
169H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]36646-4.052-0.0663No
170REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]36852-4.376-0.0529No
171KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]36893-4.443-0.0347No
172TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36895-4.452-0.0154No
173RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]37029-4.7680.0017No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN