Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetESC_V6.5_UP_EARLY.V1_UP
Enrichment Score (ES)-0.5938606
Normalized Enrichment Score (NES)-1.2759055
Nominal p-value0.03444564
FDR q-value0.25142047
FWER p-Value0.994
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_V6.5_UP_EARLY.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ECE1endothelin converting enzyme 1 [Source:HGNC Symbol;Acc:HGNC:3146]634.8080.0248No
2TNFRSF1BTNF receptor superfamily member 1B [Source:HGNC Symbol;Acc:HGNC:11917]774.7270.0506No
3ARHGEF3Rho guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:683]4853.2540.0575No
4ARAP1ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:HGNC:16925]8472.5690.0619No
5TMEM42transmembrane protein 42 [Source:HGNC Symbol;Acc:HGNC:28444]9682.3820.0718No
6SASH1SAM and SH3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19182]10582.2210.0817No
7PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]11092.1550.0922No
8SLC5A11solute carrier family 5 member 11 [Source:HGNC Symbol;Acc:HGNC:23091]12762.0620.0991No
9ARID3BAT-rich interaction domain 3B [Source:HGNC Symbol;Acc:HGNC:14350]20491.3910.0859No
10WDFY3WD repeat and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20751]23481.2200.0845No
11CCNKcyclin K [Source:HGNC Symbol;Acc:HGNC:1596]23501.2160.0912No
12HIVEP3HIVEP zinc finger 3 [Source:HGNC Symbol;Acc:HGNC:13561]24311.1720.0955No
13PTPN23protein tyrosine phosphatase non-receptor type 23 [Source:HGNC Symbol;Acc:HGNC:14406]26161.0660.0964No
14CBWD1COBW domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17134]28690.9390.0948No
15SPEF1sperm flagellar 1 [Source:HGNC Symbol;Acc:HGNC:15874]29140.9200.0987No
16PRKACBprotein kinase cAMP-activated catalytic subunit beta [Source:HGNC Symbol;Acc:HGNC:9381]31120.8350.0979No
17CSNK1G1casein kinase 1 gamma 1 [Source:HGNC Symbol;Acc:HGNC:2454]33390.7470.0959No
18CHD7chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:HGNC:20626]33530.7400.0997No
19DLL3delta like canonical Notch ligand 3 [Source:HGNC Symbol;Acc:HGNC:2909]34690.6930.1004No
20MGAMAX dimerization protein MGA [Source:HGNC Symbol;Acc:HGNC:14010]35300.6700.1025No
21TMCO4transmembrane and coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:27393]36350.6280.1031No
22ENPP2ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:3357]38040.5610.1017No
23ZDHHC6zinc finger DHHC-type palmitoyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:19160]38870.5270.1023No
24EFNB2ephrin B2 [Source:HGNC Symbol;Acc:HGNC:3227]40550.4740.1004No
25GADD45Ggrowth arrest and DNA damage inducible gamma [Source:HGNC Symbol;Acc:HGNC:4097]43190.4730.0959No
26SCAPSREBF chaperone [Source:HGNC Symbol;Acc:HGNC:30634]49380.3040.0809No
27RASAL2RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]50290.2680.0799No
28RAI1retinoic acid induced 1 [Source:HGNC Symbol;Acc:HGNC:9834]50490.2580.0808No
29RPRD2regulation of nuclear pre-mRNA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29039]52050.2120.0778No
30WIPF1WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]56450.0950.0664No
31ZNF865zinc finger protein 865 [Source:HGNC Symbol;Acc:HGNC:38705]57050.0790.0653No
32MLLT1MLLT1 super elongation complex subunit [Source:HGNC Symbol;Acc:HGNC:7134]57380.0690.0648No
33PRICKLE1prickle planar cell polarity protein 1 [Source:HGNC Symbol;Acc:HGNC:17019]65360.0000.0432No
34AQP2aquaporin 2 [Source:HGNC Symbol;Acc:HGNC:634]67310.0000.0379No
35GPRC5BG protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]69810.0000.0312No
36CASTOR3CASTOR family member 3 [Source:HGNC Symbol;Acc:HGNC:29954]70190.0000.0302No
37POU3F1POU class 3 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9214]78850.0000.0068No
38FBP1fructose-bisphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3606]79390.0000.0053No
39GPA33glycoprotein A33 [Source:HGNC Symbol;Acc:HGNC:4445]82170.000-0.0022No
40SOX11SRY-box transcription factor 11 [Source:HGNC Symbol;Acc:HGNC:11191]85160.000-0.0102No
41OPRD1opioid receptor delta 1 [Source:HGNC Symbol;Acc:HGNC:8153]87480.000-0.0165No
42ADAM1BADAM metallopeptidase domain 1B (pseudogene) [Source:HGNC Symbol;Acc:HGNC:44366]94270.000-0.0348No
43SLC23A1solute carrier family 23 member 1 [Source:HGNC Symbol;Acc:HGNC:10974]95670.000-0.0386No
44GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]96930.000-0.0420No
45HIGD1CHIG1 hypoxia inducible domain family member 1C [Source:HGNC Symbol;Acc:HGNC:28044]108120.000-0.0723No
46LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]110820.000-0.0795No
47PDZK1PDZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:8821]111090.000-0.0803No
48CGNL1cingulin like 1 [Source:HGNC Symbol;Acc:HGNC:25931]111710.000-0.0819No
49RYR3ryanodine receptor 3 [Source:HGNC Symbol;Acc:HGNC:10485]116770.000-0.0956No
50BMP10bone morphogenetic protein 10 [Source:HGNC Symbol;Acc:HGNC:20869]122030.000-0.1098No
51TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]133130.000-0.1398No
52WT1WT1 transcription factor [Source:HGNC Symbol;Acc:HGNC:12796]134250.000-0.1428No
53LPAR4lysophosphatidic acid receptor 4 [Source:HGNC Symbol;Acc:HGNC:4478]135930.000-0.1474No
54B4GALNT2beta-1,4-N-acetyl-galactosaminyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:24136]152740.000-0.1929No
55PCP4Purkinje cell protein 4 [Source:HGNC Symbol;Acc:HGNC:8742]153450.000-0.1947No
56CA4carbonic anhydrase 4 [Source:HGNC Symbol;Acc:HGNC:1375]156170.000-0.2021No
57SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]158450.000-0.2082No
58TCEAL1transcription elongation factor A like 1 [Source:HGNC Symbol;Acc:HGNC:11616]158780.000-0.2091No
59C9complement C9 [Source:HGNC Symbol;Acc:HGNC:1358]160210.000-0.2129No
60MDFIMyoD family inhibitor [Source:HGNC Symbol;Acc:HGNC:6967]160800.000-0.2145No
61GPR153G protein-coupled receptor 153 [Source:HGNC Symbol;Acc:HGNC:23618]163710.000-0.2224No
62ANKRD2ankyrin repeat domain 2 [Source:HGNC Symbol;Acc:HGNC:495]165620.000-0.2275No
63DLC1DLC1 Rho GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:2897]165940.000-0.2284No
64PMFBP1polyamine modulated factor 1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17728]177430.000-0.2594No
65DRC1dynein regulatory complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24245]184960.000-0.2798No
66LTFlactotransferrin [Source:HGNC Symbol;Acc:HGNC:6720]187450.000-0.2865No
67DOC2Adouble C2 domain alpha [Source:HGNC Symbol;Acc:HGNC:2985]190100.000-0.2937No
68MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]191990.000-0.2988No
69NRLneural retina leucine zipper [Source:HGNC Symbol;Acc:HGNC:8002]194160.000-0.3046No
70OTX2orthodenticle homeobox 2 [Source:HGNC Symbol;Acc:HGNC:8522]194590.000-0.3057No
71CORTcortistatin [Source:HGNC Symbol;Acc:HGNC:2257]202640.000-0.3275No
72LIPFlipase F, gastric type [Source:HGNC Symbol;Acc:HGNC:6622]202790.000-0.3279No
73AIREautoimmune regulator [Source:HGNC Symbol;Acc:HGNC:360]203000.000-0.3284No
74FOXQ1forkhead box Q1 [Source:HGNC Symbol;Acc:HGNC:20951]203680.000-0.3303No
75IFNA2interferon alpha 2 [Source:HGNC Symbol;Acc:HGNC:5423]216430.000-0.3648No
76WNT3AWnt family member 3A [Source:HGNC Symbol;Acc:HGNC:15983]217470.000-0.3675No
77FGF5fibroblast growth factor 5 [Source:HGNC Symbol;Acc:HGNC:3683]224470.000-0.3865No
78SLC29A4solute carrier family 29 member 4 [Source:HGNC Symbol;Acc:HGNC:23097]228460.000-0.3972No
79CCDC114coiled-coil domain containing 114 [Source:HGNC Symbol;Acc:HGNC:26560]229600.000-0.4003No
80ARHGEF16Rho guanine nucleotide exchange factor 16 [Source:HGNC Symbol;Acc:HGNC:15515]230460.000-0.4026No
81OCLNoccludin [Source:HGNC Symbol;Acc:HGNC:8104]232540.000-0.4082No
82ITIH3inter-alpha-trypsin inhibitor heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:6168]240610.000-0.4300No
83ZG16zymogen granule protein 16 [Source:HGNC Symbol;Acc:HGNC:30961]241180.000-0.4316No
84GABRR2gamma-aminobutyric acid type A receptor subunit rho2 [Source:HGNC Symbol;Acc:HGNC:4091]248030.000-0.4501No
85PKDREJpolycystin family receptor for egg jelly [Source:HGNC Symbol;Acc:HGNC:9015]248280.000-0.4507No
86TEX9testis expressed 9 [Source:HGNC Symbol;Acc:HGNC:29585]253040.000-0.4636No
87CACNG3calcium voltage-gated channel auxiliary subunit gamma 3 [Source:HGNC Symbol;Acc:HGNC:1407]253580.000-0.4650No
88SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]263660.000-0.4923No
89TTPAalpha tocopherol transfer protein [Source:HGNC Symbol;Acc:HGNC:12404]272780.000-0.5170No
90F13A1coagulation factor XIII A chain [Source:HGNC Symbol;Acc:HGNC:3531]277180.000-0.5289No
91ABCC6ATP binding cassette subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:57]280920.000-0.5390No
92OTUD7AOTU deubiquitinase 7A [Source:HGNC Symbol;Acc:HGNC:20718]28368-0.072-0.5460No
93IGSF8immunoglobulin superfamily member 8 [Source:HGNC Symbol;Acc:HGNC:17813]28469-0.094-0.5482No
94PURBpurine rich element binding protein B [Source:HGNC Symbol;Acc:HGNC:9702]28497-0.103-0.5484No
95KLC2kinesin light chain 2 [Source:HGNC Symbol;Acc:HGNC:20716]28584-0.128-0.5500No
96GATAD2BGATA zinc finger domain containing 2B [Source:HGNC Symbol;Acc:HGNC:30778]28683-0.153-0.5518No
97RUNX1RUNX family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10471]29210-0.287-0.5645No
98LRIG1leucine rich repeats and immunoglobulin like domains 1 [Source:HGNC Symbol;Acc:HGNC:17360]29401-0.340-0.5677No
99ACSS1acyl-CoA synthetase short chain family member 1 [Source:HGNC Symbol;Acc:HGNC:16091]29752-0.430-0.5748No
100SELENOPselenoprotein P [Source:HGNC Symbol;Acc:HGNC:10751]29756-0.431-0.5725No
101ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]30282-0.549-0.5837No
102SIMC1SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]30658-0.671-0.5902Yes
103VPS39VPS39 subunit of HOPS complex [Source:HGNC Symbol;Acc:HGNC:20593]30688-0.681-0.5872Yes
104DACH1dachshund family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2663]30827-0.718-0.5870Yes
105ZPBPzona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]30925-0.745-0.5855Yes
106ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]31119-0.796-0.5863Yes
107ZMAT5zinc finger matrin-type 5 [Source:HGNC Symbol;Acc:HGNC:28046]31221-0.834-0.5844Yes
108SGTBsmall glutamine rich tetratricopeptide repeat containing beta [Source:HGNC Symbol;Acc:HGNC:23567]31453-0.914-0.5856Yes
109ADAMTSL4ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]31550-0.936-0.5831Yes
110NARFnuclear prelamin A recognition factor [Source:HGNC Symbol;Acc:HGNC:29916]31614-0.961-0.5795Yes
111LIMD2LIM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28142]31796-1.025-0.5787Yes
112PTK7protein tyrosine kinase 7 (inactive) [Source:HGNC Symbol;Acc:HGNC:9618]31818-1.029-0.5736Yes
113SPOCK2SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:HGNC Symbol;Acc:HGNC:13564]31852-1.041-0.5688Yes
114ZNF771zinc finger protein 771 [Source:HGNC Symbol;Acc:HGNC:29653]31853-1.042-0.5630Yes
115TMEM158transmembrane protein 158 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:30293]32513-1.234-0.5741Yes
116SYT3synaptotagmin 3 [Source:HGNC Symbol;Acc:HGNC:11511]32555-1.249-0.5683Yes
117SP1Sp1 transcription factor [Source:HGNC Symbol;Acc:HGNC:11205]32596-1.266-0.5624Yes
118SSX2IPSSX family member 2 interacting protein [Source:HGNC Symbol;Acc:HGNC:16509]32756-1.343-0.5593Yes
119PARP6poly(ADP-ribose) polymerase family member 6 [Source:HGNC Symbol;Acc:HGNC:26921]32891-1.394-0.5552Yes
120NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]32993-1.447-0.5499Yes
121FAM189Bfamily with sequence similarity 189 member B [Source:HGNC Symbol;Acc:HGNC:1233]33099-1.490-0.5446Yes
122GSTT2glutathione S-transferase theta 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:4642]33105-1.495-0.5364Yes
123TEX2testis expressed 2 [Source:HGNC Symbol;Acc:HGNC:30884]33152-1.510-0.5294Yes
124ATP8B2ATPase phospholipid transporting 8B2 [Source:HGNC Symbol;Acc:HGNC:13534]33378-1.608-0.5266Yes
125KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33400-1.624-0.5182Yes
126SYTL2synaptotagmin like 2 [Source:HGNC Symbol;Acc:HGNC:15585]33702-1.753-0.5167Yes
127ARHGAP27Rho GTPase activating protein 27 [Source:HGNC Symbol;Acc:HGNC:31813]33746-1.776-0.5080Yes
128STIM1stromal interaction molecule 1 [Source:HGNC Symbol;Acc:HGNC:11386]33757-1.782-0.4985Yes
129AGERadvanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]33762-1.786-0.4887Yes
130GPD1glycerol-3-phosphate dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:4455]34014-1.920-0.4849Yes
131BBXBBX high mobility group box domain containing [Source:HGNC Symbol;Acc:HGNC:14422]34019-1.925-0.4744Yes
132TNRC6Btrinucleotide repeat containing adaptor 6B [Source:HGNC Symbol;Acc:HGNC:29190]34049-1.939-0.4645Yes
133RNF123ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]34112-1.974-0.4553Yes
134IRX2iroquois homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14359]34281-2.067-0.4484Yes
135CLEC11AC-type lectin domain containing 11A [Source:HGNC Symbol;Acc:HGNC:10576]34433-2.127-0.4407Yes
136SH3RF1SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:HGNC:17650]34476-2.136-0.4301Yes
137SUV39H2suppressor of variegation 3-9 homolog 2 [Source:HGNC Symbol;Acc:HGNC:17287]34662-2.266-0.4226Yes
138CRATcarnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]34690-2.286-0.4107Yes
139MBD4methyl-CpG binding domain 4, DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:6919]34844-2.385-0.4017Yes
140PCYT2phosphate cytidylyltransferase 2, ethanolamine [Source:HGNC Symbol;Acc:HGNC:8756]34982-2.474-0.3917Yes
141TMEM186transmembrane protein 186 [Source:HGNC Symbol;Acc:HGNC:24530]35036-2.520-0.3793Yes
142PHF21APHD finger protein 21A [Source:HGNC Symbol;Acc:HGNC:24156]35130-2.584-0.3675Yes
143CELSR3cadherin EGF LAG seven-pass G-type receptor 3 [Source:HGNC Symbol;Acc:HGNC:3230]35302-2.688-0.3573Yes
144KIF21Akinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]35420-2.771-0.3452Yes
145MAST3microtubule associated serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:19036]35446-2.794-0.3304Yes
146HTRA2HtrA serine peptidase 2 [Source:HGNC Symbol;Acc:HGNC:14348]35559-2.897-0.3175Yes
147SMPD2sphingomyelin phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:11121]35640-2.997-0.3031Yes
148EGLN3egl-9 family hypoxia inducible factor 3 [Source:HGNC Symbol;Acc:HGNC:14661]35787-3.127-0.2898Yes
149HES6hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]35814-3.158-0.2731Yes
150SLC16A3solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924]35864-3.203-0.2567Yes
151KCNC1potassium voltage-gated channel subfamily C member 1 [Source:HGNC Symbol;Acc:HGNC:6233]35879-3.229-0.2393Yes
152NCOA2nuclear receptor coactivator 2 [Source:HGNC Symbol;Acc:HGNC:7669]36002-3.338-0.2242Yes
153SYT8synaptotagmin 8 [Source:HGNC Symbol;Acc:HGNC:19264]36356-3.687-0.2134Yes
154GDPD3glycerophosphodiester phosphodiesterase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28638]36391-3.743-0.1936Yes
155MAGI3membrane associated guanylate kinase, WW and PDZ domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29647]36451-3.816-0.1742Yes
156ETFBKMTelectron transfer flavoprotein subunit beta lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:28739]36586-3.990-0.1558Yes
157MBOAT1membrane bound O-acyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21579]36618-4.030-0.1344Yes
158TERTtelomerase reverse transcriptase [Source:HGNC Symbol;Acc:HGNC:11730]36684-4.095-0.1135Yes
159CEP131centrosomal protein 131 [Source:HGNC Symbol;Acc:HGNC:29511]36705-4.133-0.0912Yes
160VEGFBvascular endothelial growth factor B [Source:HGNC Symbol;Acc:HGNC:12681]36846-4.370-0.0709Yes
161HDAC11histone deacetylase 11 [Source:HGNC Symbol;Acc:HGNC:19086]36867-4.403-0.0472Yes
162CYP27A1cytochrome P450 family 27 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2605]37020-4.744-0.0251Yes
163DEPTORDEP domain containing MTOR interacting protein [Source:HGNC Symbol;Acc:HGNC:22953]37050-4.8850.0011Yes
Table: GSEA details [plain text format]



Fig 2: ESC_V6.5_UP_EARLY.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_V6.5_UP_EARLY.V1_UP: Random ES distribution   
Gene set null distribution of ES for ESC_V6.5_UP_EARLY.V1_UP