Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetKRAS.LUNG.BREAST_UP.V1_UP
Enrichment Score (ES)0.6069941
Normalized Enrichment Score (NES)1.5954391
Nominal p-value0.0
FDR q-value0.0359908
FWER p-Value0.029
Table: GSEA Results Summary



Fig 1: Enrichment plot: KRAS.LUNG.BREAST_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]164.9720.0401Yes
2CSF3colony stimulating factor 3 [Source:HGNC Symbol;Acc:HGNC:2438]234.9580.0804Yes
3PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]264.9530.1207Yes
4ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]464.8770.1600Yes
5MMP9matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]714.7570.1982Yes
6TRAF1TNF receptor associated factor 1 [Source:HGNC Symbol;Acc:HGNC:12031]1414.3790.2320Yes
7GLRXglutaredoxin [Source:HGNC Symbol;Acc:HGNC:4330]2653.8770.2603Yes
8IL1RL1interleukin 1 receptor like 1 [Source:HGNC Symbol;Acc:HGNC:5998]3193.7260.2893Yes
9OSBP2oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]3553.5830.3176Yes
10TNFAIP3TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]3753.5570.3461Yes
11TNFSF15TNF superfamily member 15 [Source:HGNC Symbol;Acc:HGNC:11931]4283.3540.3720Yes
12ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]5933.0020.3921Yes
13DHRS9dehydrogenase/reductase 9 [Source:HGNC Symbol;Acc:HGNC:16888]6162.9580.4156Yes
14ADAMTS6ADAM metallopeptidase with thrombospondin type 1 motif 6 [Source:HGNC Symbol;Acc:HGNC:222]6442.8830.4384Yes
15MKRN3makorin ring finger protein 3 [Source:HGNC Symbol;Acc:HGNC:7114]7972.6500.4559Yes
16ETS1ETS proto-oncogene 1, transcription factor [Source:HGNC Symbol;Acc:HGNC:3488]8062.6380.4772Yes
17POLMDNA polymerase mu [Source:HGNC Symbol;Acc:HGNC:9185]8542.5530.4968Yes
18GYPCglycophorin C (Gerbich blood group) [Source:HGNC Symbol;Acc:HGNC:4704]8812.5140.5166Yes
19IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]9142.4610.5358Yes
20TAGLN3transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]12162.0750.5445Yes
21GPR4G protein-coupled receptor 4 [Source:HGNC Symbol;Acc:HGNC:4497]13391.9910.5575Yes
22DOCK4dedicator of cytokinesis 4 [Source:HGNC Symbol;Acc:HGNC:19192]15101.7950.5675Yes
23INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]15871.7260.5795Yes
24MMP10matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]16671.6730.5911Yes
25CD247CD247 molecule [Source:HGNC Symbol;Acc:HGNC:1677]17981.5460.6001Yes
26SH2D2ASH2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:10821]20681.3830.6041Yes
27RPS4Y1ribosomal protein S4 Y-linked 1 [Source:HGNC Symbol;Acc:HGNC:10425]23331.2250.6070Yes
28NDOR1NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]29760.8950.5969No
29ADAM8ADAM metallopeptidase domain 8 [Source:HGNC Symbol;Acc:HGNC:215]30880.8440.6008No
30HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]32470.7790.6029No
31CDSNcorneodesmosin [Source:HGNC Symbol;Acc:HGNC:1802]40510.4740.5850No
32FCRL2Fc receptor like 2 [Source:HGNC Symbol;Acc:HGNC:14875]41640.4730.5858No
33BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]47260.3690.5737No
34SPRY2sprouty RTK signaling antagonist 2 [Source:HGNC Symbol;Acc:HGNC:11270]51210.2360.5649No
35RREB1ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]57740.0560.5477No
36CCL20C-C motif chemokine ligand 20 [Source:HGNC Symbol;Acc:HGNC:10619]60320.0000.5408No
37SCG5secretogranin V [Source:HGNC Symbol;Acc:HGNC:10816]61800.0000.5368No
38RNASE1ribonuclease A family member 1, pancreatic [Source:HGNC Symbol;Acc:HGNC:10044]69140.0000.5170No
39SLCO5A1solute carrier organic anion transporter family member 5A1 [Source:HGNC Symbol;Acc:HGNC:19046]69340.0000.5164No
40SHOXshort stature homeobox [Source:HGNC Symbol;Acc:HGNC:10853]78550.0000.4915No
41CALB1calbindin 1 [Source:HGNC Symbol;Acc:HGNC:1434]84770.0000.4747No
42CLSTN2calsyntenin 2 [Source:HGNC Symbol;Acc:HGNC:17448]85930.0000.4716No
43ADAM19ADAM metallopeptidase domain 19 [Source:HGNC Symbol;Acc:HGNC:197]96530.0000.4430No
44LAT2linker for activation of T cells family member 2 [Source:HGNC Symbol;Acc:HGNC:12749]101960.0000.4283No
45FAM174Bfamily with sequence similarity 174 member B [Source:HGNC Symbol;Acc:HGNC:34339]102240.0000.4276No
46PPBPpro-platelet basic protein [Source:HGNC Symbol;Acc:HGNC:9240]107310.0000.4139No
47TFDP3transcription factor Dp family member 3 [Source:HGNC Symbol;Acc:HGNC:24603]109500.0000.4080No
48TSPAN1tetraspanin 1 [Source:HGNC Symbol;Acc:HGNC:20657]113030.0000.3985No
49CLPScolipase [Source:HGNC Symbol;Acc:HGNC:2085]114670.0000.3940No
50IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]115610.0000.3915No
51ESM1endothelial cell specific molecule 1 [Source:HGNC Symbol;Acc:HGNC:3466]116800.0000.3883No
52PRDM1PR/SET domain 1 [Source:HGNC Symbol;Acc:HGNC:9346]120560.0000.3782No
53TAAR5trace amine associated receptor 5 [Source:HGNC Symbol;Acc:HGNC:30236]124190.0000.3684No
54GBA3glucosylceramidase beta 3 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:19069]125280.0000.3655No
55RBP4retinol binding protein 4 [Source:HGNC Symbol;Acc:HGNC:9922]126750.0000.3615No
56RBMXL2RBMX like 2 [Source:HGNC Symbol;Acc:HGNC:17886]128070.0000.3580No
57GULP1GULP PTB domain containing engulfment adaptor 1 [Source:HGNC Symbol;Acc:HGNC:18649]129800.0000.3533No
58HOXD11homeobox D11 [Source:HGNC Symbol;Acc:HGNC:5134]130540.0000.3513No
59OR2B6olfactory receptor family 2 subfamily B member 6 [Source:HGNC Symbol;Acc:HGNC:8241]133170.0000.3442No
60KIAA1549LKIAA1549 like [Source:HGNC Symbol;Acc:HGNC:24836]135370.0000.3383No
61RELNreelin [Source:HGNC Symbol;Acc:HGNC:9957]136680.0000.3348No
62IL37interleukin 37 [Source:HGNC Symbol;Acc:HGNC:15563]136850.0000.3344No
63RETNresistin [Source:HGNC Symbol;Acc:HGNC:20389]137880.0000.3316No
64MYH2myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]142240.0000.3198No
65HSD11B1hydroxysteroid 11-beta dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:5208]142730.0000.3185No
66ZP4zona pellucida glycoprotein 4 [Source:HGNC Symbol;Acc:HGNC:15770]146590.0000.3081No
67SPINK1serine peptidase inhibitor Kazal type 1 [Source:HGNC Symbol;Acc:HGNC:11244]153390.0000.2897No
68G0S2G0/G1 switch 2 [Source:HGNC Symbol;Acc:HGNC:30229]157200.0000.2795No
69IL1R2interleukin 1 receptor type 2 [Source:HGNC Symbol;Acc:HGNC:5994]158010.0000.2773No
70IL23Ainterleukin 23 subunit alpha [Source:HGNC Symbol;Acc:HGNC:15488]158030.0000.2773No
71AMELYamelogenin Y-linked [Source:HGNC Symbol;Acc:HGNC:462]159110.0000.2744No
72MGLLmonoglyceride lipase [Source:HGNC Symbol;Acc:HGNC:17038]171060.0000.2421No
73GRPgastrin releasing peptide [Source:HGNC Symbol;Acc:HGNC:4605]171080.0000.2420No
74SEMA3Bsemaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]178500.0000.2220No
75CEACAM3CEA cell adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:1815]178760.0000.2213No
76IGHV3-48immunoglobulin heavy variable 3-48 [Source:HGNC Symbol;Acc:HGNC:5606]182330.0000.2117No
77BMP6bone morphogenetic protein 6 [Source:HGNC Symbol;Acc:HGNC:1073]190950.0000.1884No
78MMP1matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155]191280.0000.1875No
79NRLneural retina leucine zipper [Source:HGNC Symbol;Acc:HGNC:8002]194160.0000.1797No
80CXCL8C-X-C motif chemokine ligand 8 [Source:HGNC Symbol;Acc:HGNC:6025]194820.0000.1780No
81CXCL1C-X-C motif chemokine ligand 1 [Source:HGNC Symbol;Acc:HGNC:4602]194910.0000.1777No
82CXCL3C-X-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:4604]194930.0000.1777No
83CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]194940.0000.1777No
84CXCL5C-X-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642]194960.0000.1777No
85TBX3T-box transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:11602]197620.0000.1705No
86HSD17B2hydroxysteroid 17-beta dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:5211]198200.0000.1690No
87NELL2neural EGFL like 2 [Source:HGNC Symbol;Acc:HGNC:7751]205000.0000.1506No
88SLC25A31solute carrier family 25 member 31 [Source:HGNC Symbol;Acc:HGNC:25319]205020.0000.1506No
89NPPBnatriuretic peptide B [Source:HGNC Symbol;Acc:HGNC:7940]205790.0000.1485No
90TSPY1testis specific protein Y-linked 1 [Source:HGNC Symbol;Acc:HGNC:12381]206830.0000.1457No
91KCNJ14potassium inwardly rectifying channel subfamily J member 14 [Source:HGNC Symbol;Acc:HGNC:6260]207880.0000.1429No
92SNAP25synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]210780.0000.1351No
93KCNK15potassium two pore domain channel subfamily K member 15 [Source:HGNC Symbol;Acc:HGNC:13814]211660.0000.1327No
94DNAH9dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]213470.0000.1279No
95FAM155Bfamily with sequence similarity 155 member B [Source:HGNC Symbol;Acc:HGNC:30701]213680.0000.1273No
96CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]214530.0000.1251No
97SNAP91synaptosome associated protein 91 [Source:HGNC Symbol;Acc:HGNC:14986]216300.0000.1203No
98IFNA8interferon alpha 8 [Source:HGNC Symbol;Acc:HGNC:5429]216460.0000.1199No
99CHRNA2cholinergic receptor nicotinic alpha 2 subunit [Source:HGNC Symbol;Acc:HGNC:1956]217320.0000.1176No
100HAS2hyaluronan synthase 2 [Source:HGNC Symbol;Acc:HGNC:4819]218920.0000.1133No
101PTPRRprotein tyrosine phosphatase receptor type R [Source:HGNC Symbol;Acc:HGNC:9680]220280.0000.1096No
102TTC22tetratricopeptide repeat domain 22 [Source:HGNC Symbol;Acc:HGNC:26067]223160.0000.1019No
103PRSS3serine protease 3 [Source:HGNC Symbol;Acc:HGNC:9486]223860.0000.1000No
104SMPXsmall muscle protein X-linked [Source:HGNC Symbol;Acc:HGNC:11122]225240.0000.0963No
105PDCD1LG2programmed cell death 1 ligand 2 [Source:HGNC Symbol;Acc:HGNC:18731]226250.0000.0936No
106FNDC8fibronectin type III domain containing 8 [Source:HGNC Symbol;Acc:HGNC:25286]229230.0000.0855No
107ITGA2integrin subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:6137]235380.0000.0689No
108A2Malpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]241310.0000.0529No
109GABRA3gamma-aminobutyric acid type A receptor subunit alpha3 [Source:HGNC Symbol;Acc:HGNC:4077]246640.0000.0385No
110NR1H4nuclear receptor subfamily 1 group H member 4 [Source:HGNC Symbol;Acc:HGNC:7967]246650.0000.0385No
111PRLprolactin [Source:HGNC Symbol;Acc:HGNC:9445]248000.0000.0349No
112PRYPTPN13 like Y-linked [Source:HGNC Symbol;Acc:HGNC:14024]248070.0000.0347No
113KRT34keratin 34 [Source:HGNC Symbol;Acc:HGNC:6452]267840.000-0.0188No
114CRCT1cysteine rich C-terminal 1 [Source:HGNC Symbol;Acc:HGNC:29875]269930.000-0.0244No
115RMSTrhabdomyosarcoma 2 associated transcript [Source:HGNC Symbol;Acc:HGNC:29893]270880.000-0.0269No
116NAV3neuron navigator 3 [Source:HGNC Symbol;Acc:HGNC:15998]272210.000-0.0305No
117CMKLR1chemerin chemokine-like receptor 1 [Source:HGNC Symbol;Acc:HGNC:2121]272600.000-0.0315No
118CD1ACD1a molecule [Source:HGNC Symbol;Acc:HGNC:1634]278860.000-0.0485No
119CCR6C-C motif chemokine receptor 6 [Source:HGNC Symbol;Acc:HGNC:1607]279290.000-0.0496No
120AKT2AKT serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:392]28441-0.087-0.0627No
121STC1stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]28887-0.203-0.0731No
122ZNF639zinc finger protein 639 [Source:HGNC Symbol;Acc:HGNC:30950]29222-0.290-0.0798No
123CTNNA2catenin alpha 2 [Source:HGNC Symbol;Acc:HGNC:2510]30231-0.537-0.1027No
124ST3GAL6ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:18080]30292-0.552-0.0998No
125KIF5Ckinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]30454-0.604-0.0992No
126HPNhepsin [Source:HGNC Symbol;Acc:HGNC:5155]30653-0.670-0.0991No
127GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]31053-0.790-0.1035No
128CD37CD37 molecule [Source:HGNC Symbol;Acc:HGNC:1666]31173-0.816-0.1000No
129OSGIN1oxidative stress induced growth inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:30093]31608-0.959-0.1040No
130LILRA6leukocyte immunoglobulin like receptor A6 [Source:HGNC Symbol;Acc:HGNC:15495]32921-1.410-0.1280No
131ITPKAinositol-trisphosphate 3-kinase A [Source:HGNC Symbol;Acc:HGNC:6178]33555-1.696-0.1313No
132ATG10autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]33624-1.735-0.1189No
133PDE2Aphosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]34084-1.955-0.1154No
134KCNC2potassium voltage-gated channel subfamily C member 2 [Source:HGNC Symbol;Acc:HGNC:6234]34407-2.127-0.1068No
135SLCO4A1solute carrier organic anion transporter family member 4A1 [Source:HGNC Symbol;Acc:HGNC:10953]34522-2.177-0.0921No
136CCDC181coiled-coil domain containing 181 [Source:HGNC Symbol;Acc:HGNC:28051]34876-2.403-0.0821No
137ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]35023-2.508-0.0656No
138KCNC1potassium voltage-gated channel subfamily C member 1 [Source:HGNC Symbol;Acc:HGNC:6233]35879-3.229-0.0624No
139KIF5Akinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]36365-3.703-0.0453No
140LDB3LIM domain binding 3 [Source:HGNC Symbol;Acc:HGNC:15710]36485-3.853-0.0171No
141TERTtelomerase reverse transcriptase [Source:HGNC Symbol;Acc:HGNC:11730]36684-4.0950.0110No
Table: GSEA details [plain text format]



Fig 2: KRAS.LUNG.BREAST_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: KRAS.LUNG.BREAST_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for KRAS.LUNG.BREAST_UP.V1_UP