Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | greenberg_collapsed_to_symbols.Nof1.cls #KO_LPS_versus_KO_NA.Nof1.cls #KO_LPS_versus_KO_NA_repos |
| Phenotype | Nof1.cls#KO_LPS_versus_KO_NA_repos |
| Upregulated in class | KO_LPS |
| GeneSet | HALLMARK_ANGIOGENESIS |
| Enrichment Score (ES) | 0.4740228 |
| Normalized Enrichment Score (NES) | 1.0251435 |
| Nominal p-value | 0.37117904 |
| FDR q-value | 0.39769968 |
| FWER p-Value | 0.794 |
| SYMBOL | TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|
| 1 | TIMP1 | TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820] | 73 | 4.750 | 0.1499 | Yes |
| 2 | CCND2 | cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583] | 393 | 3.496 | 0.2531 | Yes |
| 3 | ITGAV | integrin subunit alpha V [Source:HGNC Symbol;Acc:HGNC:6150] | 398 | 3.471 | 0.3639 | Yes |
| 4 | SPP1 | secreted phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11255] | 404 | 3.447 | 0.4740 | Yes |
| 5 | PDGFA | platelet derived growth factor subunit A [Source:HGNC Symbol;Acc:HGNC:8799] | 2320 | 1.233 | 0.4618 | No |
| 6 | PTK2 | protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611] | 3532 | 0.669 | 0.4505 | No |
| 7 | VEGFA | vascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680] | 5184 | 0.218 | 0.4129 | No |
| 8 | APP | amyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620] | 5253 | 0.200 | 0.4175 | No |
| 9 | LPL | lipoprotein lipase [Source:HGNC Symbol;Acc:HGNC:6677] | 5597 | 0.111 | 0.4118 | No |
| 10 | APOH | apolipoprotein H [Source:HGNC Symbol;Acc:HGNC:616] | 6490 | 0.000 | 0.3877 | No |
| 11 | FGFR1 | fibroblast growth factor receptor 1 [Source:HGNC Symbol;Acc:HGNC:3688] | 6837 | 0.000 | 0.3783 | No |
| 12 | TNFRSF21 | TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469] | 8978 | 0.000 | 0.3206 | No |
| 13 | KCNJ8 | potassium inwardly rectifying channel subfamily J member 8 [Source:HGNC Symbol;Acc:HGNC:6269] | 9556 | 0.000 | 0.3050 | No |
| 14 | POSTN | periostin [Source:HGNC Symbol;Acc:HGNC:16953] | 9982 | 0.000 | 0.2936 | No |
| 15 | PRG2 | proteoglycan 2, pro eosinophil major basic protein [Source:HGNC Symbol;Acc:HGNC:9362] | 11307 | 0.000 | 0.2578 | No |
| 16 | MSX1 | msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391] | 12321 | 0.000 | 0.2305 | No |
| 17 | THBD | thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784] | 12508 | 0.000 | 0.2255 | No |
| 18 | VTN | vitronectin [Source:HGNC Symbol;Acc:HGNC:12724] | 13108 | 0.000 | 0.2093 | No |
| 19 | OLR1 | oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133] | 16679 | 0.000 | 0.1130 | No |
| 20 | SERPINA5 | serpin family A member 5 [Source:HGNC Symbol;Acc:HGNC:8723] | 17777 | 0.000 | 0.0833 | No |
| 21 | LUM | lumican [Source:HGNC Symbol;Acc:HGNC:6724] | 18775 | 0.000 | 0.0564 | No |
| 22 | CXCL6 | C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643] | 19477 | 0.000 | 0.0375 | No |
| 23 | COL3A1 | collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201] | 19667 | 0.000 | 0.0324 | No |
| 24 | SLCO2A1 | solute carrier organic anion transporter family member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955] | 23719 | 0.000 | -0.0769 | No |
| 25 | PF4 | platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861] | 24679 | 0.000 | -0.1028 | No |
| 26 | COL5A2 | collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210] | 25066 | 0.000 | -0.1132 | No |
| 27 | PGLYRP1 | peptidoglycan recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:8904] | 25567 | 0.000 | -0.1267 | No |
| 28 | FSTL1 | follistatin like 1 [Source:HGNC Symbol;Acc:HGNC:3972] | 26154 | 0.000 | -0.1425 | No |
| 29 | STC1 | stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373] | 28887 | -0.203 | -0.2097 | No |
| 30 | VCAN | versican [Source:HGNC Symbol;Acc:HGNC:2464] | 30678 | -0.678 | -0.2364 | No |
| 31 | S100A4 | S100 calcium binding protein A4 [Source:HGNC Symbol;Acc:HGNC:10494] | 31036 | -0.782 | -0.2210 | No |
| 32 | LRPAP1 | LDL receptor related protein associated protein 1 [Source:HGNC Symbol;Acc:HGNC:6701] | 31267 | -0.851 | -0.2000 | No |
| 33 | JAG1 | jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188] | 31434 | -0.906 | -0.1756 | No |
| 34 | VAV2 | vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658] | 35404 | -2.757 | -0.1945 | No |
| 35 | NRP1 | neuropilin 1 [Source:HGNC Symbol;Acc:HGNC:8004] | 35599 | -2.946 | -0.1056 | No |
| 36 | JAG2 | jagged canonical Notch ligand 2 [Source:HGNC Symbol;Acc:HGNC:6189] | 36944 | -4.559 | 0.0039 | No |
