Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_COAGULATION
Enrichment Score (ES)0.4360135
Normalized Enrichment Score (NES)1.1597668
Nominal p-value0.055555556
FDR q-value0.17267816
FWER p-Value0.426
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_COAGULATION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SERPINB2serpin family B member 2 [Source:HGNC Symbol;Acc:HGNC:8584]524.8450.0328Yes
2MMP9matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]714.7570.0659Yes
3TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]734.7500.0995Yes
4CFBcomplement factor B [Source:HGNC Symbol;Acc:HGNC:1037]754.7450.1329Yes
5MAFFMAF bZIP transcription factor F [Source:HGNC Symbol;Acc:HGNC:6780]1684.2590.1605Yes
6PDGFBplatelet derived growth factor subunit B [Source:HGNC Symbol;Acc:HGNC:8800]1714.2510.1905Yes
7FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]2084.0840.2184Yes
8SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2433.9760.2455Yes
9F9coagulation factor IX [Source:HGNC Symbol;Acc:HGNC:3551]2633.8850.2725Yes
10DUSP14dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]2993.7890.2983Yes
11FBN1fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]3903.5140.3207Yes
12MMP14matrix metallopeptidase 14 [Source:HGNC Symbol;Acc:HGNC:7160]5982.9900.3362Yes
13SERPINC1serpin family C member 1 [Source:HGNC Symbol;Acc:HGNC:775]6232.9460.3563Yes
14MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]6432.8850.3762Yes
15PLEKpleckstrin [Source:HGNC Symbol;Acc:HGNC:9070]7602.7250.3923Yes
16ITIH1inter-alpha-trypsin inhibitor heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:6166]12892.0500.3925Yes
17WDR1WD repeat domain 1 [Source:HGNC Symbol;Acc:HGNC:12754]13541.9710.4047Yes
18ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]14921.8200.4138Yes
19MMP10matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]16671.6730.4209Yes
20GNG12G protein subunit gamma 12 [Source:HGNC Symbol;Acc:HGNC:19663]17561.5800.4297Yes
21BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]20621.3850.4312Yes
22FYNFYN proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:4037]24691.1620.4285Yes
23CD9CD9 molecule [Source:HGNC Symbol;Acc:HGNC:1709]25311.1230.4348Yes
24S100A13S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]29400.9100.4301Yes
25CTSVcathepsin V [Source:HGNC Symbol;Acc:HGNC:2538]29590.9010.4360Yes
26ARF4ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]33570.7370.4305No
27GDAguanine deaminase [Source:HGNC Symbol;Acc:HGNC:4212]37730.5720.4233No
28KLF7Kruppel like factor 7 [Source:HGNC Symbol;Acc:HGNC:6350]45880.4120.4042No
29LAMP2lysosomal associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:6501]46770.3820.4045No
30ADAM9ADAM metallopeptidase domain 9 [Source:HGNC Symbol;Acc:HGNC:216]47240.3690.4058No
31CTSKcathepsin K [Source:HGNC Symbol;Acc:HGNC:2536]47480.3620.4078No
32MST1macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]50450.2600.4016No
33PREPprolyl endopeptidase [Source:HGNC Symbol;Acc:HGNC:9358]51340.2340.4009No
34C3complement C3 [Source:HGNC Symbol;Acc:HGNC:1318]54950.1350.3921No
35PEF1penta-EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30009]55540.1210.3914No
36MASP2mannan binding lectin serine peptidase 2 [Source:HGNC Symbol;Acc:HGNC:6902]58770.0190.3828No
37RAPGEF3Rap guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:16629]63190.0000.3709No
38PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]96410.0000.2810No
39APOA1apolipoprotein A1 [Source:HGNC Symbol;Acc:HGNC:600]98590.0000.2751No
40APOC3apolipoprotein C3 [Source:HGNC Symbol;Acc:HGNC:610]98750.0000.2747No
41APOC2apolipoprotein C2 [Source:HGNC Symbol;Acc:HGNC:609]98770.0000.2747No
42APOC1apolipoprotein C1 [Source:HGNC Symbol;Acc:HGNC:607]98780.0000.2747No
43F13Bcoagulation factor XIII B chain [Source:HGNC Symbol;Acc:HGNC:3534]106190.0000.2547No
44KLKB1kallikrein B1 [Source:HGNC Symbol;Acc:HGNC:6371]109060.0000.2469No
45TMPRSS6transmembrane serine protease 6 [Source:HGNC Symbol;Acc:HGNC:16517]113270.0000.2356No
46PROZprotein Z, vitamin K dependent plasma glycoprotein [Source:HGNC Symbol;Acc:HGNC:9460]113740.0000.2343No
47PROCprotein C, inactivator of coagulation factors Va and VIIIa [Source:HGNC Symbol;Acc:HGNC:9451]113920.0000.2339No
48ACOX2acyl-CoA oxidase 2 [Source:HGNC Symbol;Acc:HGNC:120]121220.0000.2141No
49THBDthrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784]125080.0000.2037No
50P2RY1purinergic receptor P2Y1 [Source:HGNC Symbol;Acc:HGNC:8539]139840.0000.1638No
51MBL2mannose binding lectin 2 [Source:HGNC Symbol;Acc:HGNC:6922]155050.0000.1227No
52C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]155140.0000.1225No
53C8Bcomplement C8 beta chain [Source:HGNC Symbol;Acc:HGNC:1353]155750.0000.1208No
54C8Acomplement C8 alpha chain [Source:HGNC Symbol;Acc:HGNC:1352]155760.0000.1208No
55C8Gcomplement C8 gamma chain [Source:HGNC Symbol;Acc:HGNC:1354]155780.0000.1208No
56HTRA1HtrA serine peptidase 1 [Source:HGNC Symbol;Acc:HGNC:9476]155990.0000.1203No
57CFDcomplement factor D [Source:HGNC Symbol;Acc:HGNC:2771]156770.0000.1182No
58CFIcomplement factor I [Source:HGNC Symbol;Acc:HGNC:5394]156780.0000.1182No
59DCTdopachrome tautomerase [Source:HGNC Symbol;Acc:HGNC:2709]159410.0000.1111No
60C2complement C2 [Source:HGNC Symbol;Acc:HGNC:1248]160160.0000.1091No
61C9complement C9 [Source:HGNC Symbol;Acc:HGNC:1358]160210.0000.1090No
62F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]160650.0000.1078No
63TFtransferrin [Source:HGNC Symbol;Acc:HGNC:11740]161840.0000.1046No
64F10coagulation factor X [Source:HGNC Symbol;Acc:HGNC:3528]163870.0000.0992No
65F12coagulation factor XII [Source:HGNC Symbol;Acc:HGNC:3530]163880.0000.0992No
66F11coagulation factor XI [Source:HGNC Symbol;Acc:HGNC:3529]163890.0000.0992No
67FGAfibrinogen alpha chain [Source:HGNC Symbol;Acc:HGNC:3661]166260.0000.0928No
68FGGfibrinogen gamma chain [Source:HGNC Symbol;Acc:HGNC:3694]166270.0000.0928No
69OLR1oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]166790.0000.0914No
70GP9glycoprotein IX platelet [Source:HGNC Symbol;Acc:HGNC:4444]170830.0000.0805No
71TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170940.0000.0802No
72HRGhistidine rich glycoprotein [Source:HGNC Symbol;Acc:HGNC:5181]174480.0000.0707No
73HNF4Ahepatocyte nuclear factor 4 alpha [Source:HGNC Symbol;Acc:HGNC:5024]176280.0000.0658No
74SERPING1serpin family G member 1 [Source:HGNC Symbol;Acc:HGNC:1228]177560.0000.0624No
75SERPINA1serpin family A member 1 [Source:HGNC Symbol;Acc:HGNC:8941]177700.0000.0620No
76DPP4dipeptidyl peptidase 4 [Source:HGNC Symbol;Acc:HGNC:3009]179290.0000.0578No
77MMP7matrix metallopeptidase 7 [Source:HGNC Symbol;Acc:HGNC:7174]191250.0000.0254No
78MMP1matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155]191280.0000.0254No
79MMP3matrix metallopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:7173]191320.0000.0253No
80MMP8matrix metallopeptidase 8 [Source:HGNC Symbol;Acc:HGNC:7175]191380.0000.0251No
81MEP1Ameprin A subunit alpha [Source:HGNC Symbol;Acc:HGNC:7015]201250.000-0.0015No
82GP1BAglycoprotein Ib platelet subunit alpha [Source:HGNC Symbol;Acc:HGNC:4439]201900.000-0.0033No
83CPB2carboxypeptidase B2 [Source:HGNC Symbol;Acc:HGNC:2300]203860.000-0.0085No
84TFPI2tissue factor pathway inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11761]219410.000-0.0506No
85PRSS23serine protease 23 [Source:HGNC Symbol;Acc:HGNC:14370]222310.000-0.0584No
86ITGB3integrin subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:6156]235240.000-0.0934No
87ITGA2integrin subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:6137]235380.000-0.0937No
88A2Malpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]241310.000-0.1098No
89SPARCsecreted protein acidic and cysteine rich [Source:HGNC Symbol;Acc:HGNC:11219]245040.000-0.1198No
90PF4platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861]246790.000-0.1245No
91HMGCS23-hydroxy-3-methylglutaryl-CoA synthase 2 [Source:HGNC Symbol;Acc:HGNC:5008]247220.000-0.1257No
92PLGplasminogen [Source:HGNC Symbol;Acc:HGNC:9071]247560.000-0.1266No
93C1QAcomplement C1q A chain [Source:HGNC Symbol;Acc:HGNC:1241]248130.000-0.1281No
94LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]249310.000-0.1312No
95RGNregucalcin [Source:HGNC Symbol;Acc:HGNC:9989]252370.000-0.1395No
96KLK8kallikrein related peptidase 8 [Source:HGNC Symbol;Acc:HGNC:6369]253910.000-0.1436No
97MMP11matrix metallopeptidase 11 [Source:HGNC Symbol;Acc:HGNC:7157]256360.000-0.1502No
98F2RL2coagulation factor II thrombin receptor like 2 [Source:HGNC Symbol;Acc:HGNC:3539]259680.000-0.1592No
99RABIFRAB interacting factor [Source:HGNC Symbol;Acc:HGNC:9797]28356-0.069-0.2233No
100GNB2G protein subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:4398]28556-0.120-0.2278No
101RAC1Rac family small GTPase 1 [Source:HGNC Symbol;Acc:HGNC:9801]28771-0.176-0.2324No
102MMP15matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]28808-0.185-0.2321No
103CPN1carboxypeptidase N subunit 1 [Source:HGNC Symbol;Acc:HGNC:2312]29748-0.429-0.2544No
104CTSBcathepsin B [Source:HGNC Symbol;Acc:HGNC:2527]30021-0.505-0.2582No
105MSRB2methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:HGNC:17061]30061-0.515-0.2556No
106C1Rcomplement C1r [Source:HGNC Symbol;Acc:HGNC:1246]30546-0.634-0.2643No
107SIRT2sirtuin 2 [Source:HGNC Symbol;Acc:HGNC:10886]30599-0.650-0.2611No
108HPNhepsin [Source:HGNC Symbol;Acc:HGNC:5155]30653-0.670-0.2578No
109S100A1S100 calcium binding protein A1 [Source:HGNC Symbol;Acc:HGNC:10486]30778-0.703-0.2562No
110ISCUiron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]30996-0.769-0.2566No
111CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]32096-1.134-0.2783No
112DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]32194-1.173-0.2727No
113VWFvon Willebrand factor [Source:HGNC Symbol;Acc:HGNC:12726]32327-1.232-0.2675No
114F3coagulation factor III, tissue factor [Source:HGNC Symbol;Acc:HGNC:3541]32447-1.232-0.2621No
115CAPN2calpain 2 [Source:HGNC Symbol;Acc:HGNC:1479]32531-1.239-0.2556No
116CTSOcathepsin O [Source:HGNC Symbol;Acc:HGNC:2542]32743-1.336-0.2518No
117FN1fibronectin 1 [Source:HGNC Symbol;Acc:HGNC:3778]32818-1.362-0.2442No
118CTSEcathepsin E [Source:HGNC Symbol;Acc:HGNC:2530]32925-1.413-0.2371No
119CSRP1cysteine and glycine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:2469]33700-1.752-0.2457No
120CTSHcathepsin H [Source:HGNC Symbol;Acc:HGNC:2535]33818-1.820-0.2360No
121LRP1LDL receptor related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]34022-1.926-0.2279No
122CAPN5calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]34080-1.955-0.2156No
123CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]34215-2.033-0.2049No
124COMPcartilage oligomeric matrix protein [Source:HGNC Symbol;Acc:HGNC:2227]34454-2.128-0.1963No
125CRIP2cysteine rich protein 2 [Source:HGNC Symbol;Acc:HGNC:2361]34455-2.128-0.1813No
126LTA4Hleukotriene A4 hydrolase [Source:HGNC Symbol;Acc:HGNC:6710]34496-2.153-0.1671No
127CPQcarboxypeptidase Q [Source:HGNC Symbol;Acc:HGNC:16910]34525-2.180-0.1525No
128USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]34622-2.246-0.1392No
129THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]34746-2.313-0.1262No
130SH2B2SH2B adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:17381]35175-2.620-0.1193No
131ANGangiogenin [Source:HGNC Symbol;Acc:HGNC:483]35303-2.688-0.1037No
132PROS1protein S [Source:HGNC Symbol;Acc:HGNC:9456]35411-2.765-0.0871No
133CFHcomplement factor H [Source:HGNC Symbol;Acc:HGNC:4883]35425-2.774-0.0679No
134GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]36048-3.379-0.0608No
135LGMNlegumain [Source:HGNC Symbol;Acc:HGNC:9472]36139-3.470-0.0388No
136PLAUplasminogen activator, urokinase [Source:HGNC Symbol;Acc:HGNC:9052]36742-4.179-0.0255No
137F8coagulation factor VIII [Source:HGNC Symbol;Acc:HGNC:3546]37069-4.9450.0006No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_COAGULATION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_COAGULATION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_COAGULATION