Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.4562357
Normalized Enrichment Score (NES)-0.97770166
Nominal p-value0.5438787
FDR q-value0.8647987
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]604.8190.0220No
2PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]1734.2420.0397No
3PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]2354.0120.0578No
4NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]2513.9520.0767No
5ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]3303.6930.0927No
6COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]5773.0430.1010No
7HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]9592.3860.1023No
8TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]9772.3640.1135No
9POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]10142.2950.1237No
10RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]10622.2150.1333No
11POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]10782.1880.1436No
12PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]11232.1420.1529No
13GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]16301.6900.1475No
14SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]16881.6550.1541No
15POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]18691.4930.1565No
16BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]19041.4620.1628No
17POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]20181.4170.1666No
18ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]21511.3290.1696No
19APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]21691.3180.1756No
20NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]21701.3160.1820No
21SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]24231.1770.1810No
22CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]24901.1480.1848No
23ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]24991.1430.1902No
24GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]25631.1000.1939No
25DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]27391.0090.1941No
26GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]27571.0020.1985No
27GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]27820.9880.2027No
28ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]27880.9870.2074No
29ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]28860.9320.2094No
30STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]28970.9290.2137No
31GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]31100.8360.2120No
32TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]32240.7870.2128No
33SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]33930.7220.2118No
34TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]36500.6210.2079No
35CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]38600.5410.2049No
36POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]39150.5160.2060No
37RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]39170.5160.2085No
38CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]39390.5110.2104No
39POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]39630.5020.2123No
40SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]45670.4190.1980No
41ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]46600.3870.1974No
42NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]47070.3750.1980No
43ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]49100.3120.1940No
44POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]51060.2410.1899No
45RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]52090.2120.1882No
46POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]52760.1940.1874No
47TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]54400.1480.1837No
48SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]55350.1260.1818No
49TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]57840.0540.1753No
50POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]57870.0520.1755No
51TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]59010.0180.1726No
52GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]130320.000-0.0205No
53BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]156710.000-0.0919No
54VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]161460.000-0.1047No
55BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]178660.000-0.1512No
56NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]205950.000-0.2251No
57ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]224340.000-0.2748No
58ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]232530.000-0.2970No
59CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]278760.000-0.4221No
60SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]28166-0.014-0.4298No
61RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]28206-0.025-0.4308No
62GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]28583-0.127-0.4403No
63DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]28747-0.170-0.4439No
64TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]28775-0.177-0.4438No
65VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]29114-0.258-0.4517No
66GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]29122-0.261-0.4506No
67CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]29248-0.298-0.4525No
68POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]29377-0.333-0.4543No
69POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]29389-0.337-0.4530No
70EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]29457-0.356-0.4530No
71SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]29576-0.380-0.4544Yes
72ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]29592-0.385-0.4529Yes
73MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]29684-0.413-0.4533Yes
74RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]29735-0.425-0.4526Yes
75POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]29782-0.437-0.4517Yes
76NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]29877-0.462-0.4520Yes
77NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]29925-0.476-0.4509Yes
78POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]30121-0.532-0.4536Yes
79BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]30132-0.535-0.4512Yes
80SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]30133-0.536-0.4486Yes
81ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]30282-0.549-0.4499Yes
82DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]30473-0.613-0.4521Yes
83UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]30560-0.640-0.4513Yes
84SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]30645-0.666-0.4503Yes
85EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]30815-0.714-0.4514Yes
86ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]30877-0.734-0.4494Yes
87DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]31000-0.769-0.4489Yes
88TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]31201-0.828-0.4503Yes
89MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]31370-0.881-0.4505Yes
90ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]31543-0.934-0.4506Yes
91CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]31602-0.953-0.4475Yes
92RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]31652-0.975-0.4441Yes
93ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]31676-0.982-0.4399Yes
94TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]31731-1.002-0.4364Yes
95NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]31737-1.003-0.4316Yes
96NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]31738-1.003-0.4267Yes
97POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]31776-1.017-0.4227Yes
98POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]31851-1.041-0.4196Yes
99SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]31954-1.077-0.4171Yes
100XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]32049-1.111-0.4142Yes
101TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]32088-1.131-0.4097Yes
102HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]32219-1.185-0.4074Yes
103PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32234-1.194-0.4020Yes
104NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]32264-1.205-0.3968Yes
105TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]32671-1.307-0.4014Yes
106VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]32767-1.346-0.3974Yes
107POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]32808-1.359-0.3918Yes
108NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]32993-1.447-0.3897Yes
109IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]33002-1.452-0.3828Yes
110SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]33023-1.463-0.3762Yes
111NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]33259-1.558-0.3749Yes
112RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]33302-1.578-0.3683Yes
113MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]33332-1.587-0.3613Yes
114POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]33458-1.647-0.3566Yes
115GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]33481-1.656-0.3491Yes
116RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]33629-1.738-0.3446Yes
117POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]33676-1.740-0.3373Yes
118FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]33804-1.813-0.3319Yes
119POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]33817-1.819-0.3233Yes
120POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]34117-1.977-0.3217Yes
121GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]34133-1.984-0.3124Yes
122NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]34151-1.996-0.3030Yes
123AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]34194-2.021-0.2943Yes
124RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]34498-2.155-0.2919Yes
125POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]34553-2.199-0.2826Yes
126AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]34562-2.205-0.2720Yes
127USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]34622-2.246-0.2626Yes
128RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]34656-2.264-0.2524Yes
129SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]34709-2.294-0.2426Yes
130RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]34863-2.398-0.2349Yes
131PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35069-2.538-0.2281Yes
132DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]35154-2.602-0.2176Yes
133RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35172-2.617-0.2052Yes
134POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]35239-2.677-0.1939Yes
135AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]35298-2.685-0.1823Yes
136ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]35318-2.693-0.1696Yes
137REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]35507-2.852-0.1607Yes
138ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]35544-2.882-0.1476Yes
139DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]35608-2.958-0.1348Yes
140UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]35639-2.996-0.1209Yes
141POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]35858-3.197-0.1112Yes
142RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]36106-3.443-0.1010Yes
143POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]36128-3.460-0.0846Yes
144DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36137-3.470-0.0678Yes
145AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]36192-3.524-0.0520Yes
146GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]36315-3.646-0.0374Yes
147LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]36371-3.711-0.0207Yes
148TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]36373-3.713-0.0026Yes
149NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36911-4.4790.0048Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR