Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.8510799
Normalized Enrichment Score (NES)2.14457
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]174.9710.0208Yes
2GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]324.9310.0416Yes
3IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]354.9280.0627Yes
4ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]464.8770.0833Yes
5PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]574.8230.1037Yes
6CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]604.8190.1243Yes
7MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]664.7760.1446Yes
8CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]784.7270.1646Yes
9OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]854.6820.1845Yes
10USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]974.6350.2041Yes
11IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]1014.6170.2238Yes
12HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]1064.6050.2434Yes
13IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]1194.5150.2624Yes
14IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]1264.4460.2813Yes
15GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]1544.3280.2991Yes
16HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]1624.2950.3173Yes
17TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]1694.2590.3354Yes
18DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]1804.2200.3532Yes
19PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]2214.0600.3696Yes
20EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]2284.0360.3867Yes
21STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]2493.9620.4031Yes
22SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]2573.9330.4198Yes
23SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]2643.8820.4363Yes
24TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]2673.8740.4528Yes
25IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]2813.8330.4689Yes
26CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]2833.8290.4853Yes
27PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]2913.8080.5014Yes
28TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]2923.8080.5177Yes
29DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]2983.7890.5338Yes
30OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]3073.7810.5498Yes
31TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]3213.7250.5654Yes
32EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]3743.5570.5793Yes
33SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]3793.5450.5944Yes
34UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]4313.3360.6073Yes
35LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]5563.0950.6172Yes
36PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]5803.0350.6296Yes
37UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]5873.0160.6423Yes
38TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]5883.0150.6553Yes
39PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]5942.9980.6680Yes
40MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]6382.8910.6792Yes
41PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]7452.7540.6881Yes
42CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]8162.6230.6975Yes
43IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]8282.6090.7084Yes
44IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]8412.5860.7191Yes
45ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]8422.5840.7302Yes
46RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]9202.4580.7387Yes
47TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]9412.4180.7485Yes
48IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]9442.4150.7588Yes
49PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]10102.3080.7669Yes
50ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]10252.2760.7763Yes
51IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]10272.2700.7860Yes
52PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]11092.1550.7930Yes
53PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]11542.0930.8008Yes
54CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]13501.9720.8040Yes
55CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]14301.8750.8099Yes
56CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]14521.8520.8173Yes
57TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]15111.7950.8234Yes
58IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]15761.7410.8291Yes
59B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]17931.5520.8299Yes
60IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]19121.4580.8330Yes
61PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]19291.4490.8388Yes
62TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]20561.3880.8413Yes
63PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]20721.3790.8468Yes
64IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]22901.2530.8463Yes
65OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]23781.2040.8491Yes
66WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]25811.0860.8483Yes
67HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]27610.9980.8478Yes
68RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]28480.9540.8495Yes
69LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]29360.9130.8511Yes
70TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]40360.4750.8234No
71NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]49850.2850.7990No
72IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]52110.2110.7938No
73NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]55430.1250.7854No
74SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]68310.0000.7506No
75CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]84500.0000.7069No
76BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]85760.0000.7035No
77LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]89340.0000.6939No
78RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]102550.0000.6582No
79IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]112800.0000.6305No
80BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]122830.0000.6034No
81IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]137100.0000.5649No
82C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]155140.0000.5161No
83IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]176980.0000.4571No
84TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]177850.0000.4548No
85CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]189340.0000.4238No
86NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]193560.0000.4124No
87LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]214640.0000.3554No
88IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]30264-0.5430.1199No
89ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]30313-0.5590.1210No
90SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]31171-0.8160.1013No
91MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]31869-1.0460.0870No
92IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]32464-1.2320.0762No
93CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]32753-1.3410.0742No
94LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]33373-1.6060.0643No
95CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]33637-1.7400.0647No
96TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35184-2.6270.0341No
97GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36647-4.0520.0120No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE