Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_NA
GeneSetHALLMARK_SPERMATOGENESIS
Enrichment Score (ES)-0.6234215
Normalized Enrichment Score (NES)-1.3309257
Nominal p-value0.014238773
FDR q-value0.15224479
FWER p-Value0.578
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_SPERMATOGENESIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MLF1myeloid leukemia factor 1 [Source:HGNC Symbol;Acc:HGNC:7125]3763.5510.0171No
2PACRGparkin coregulated [Source:HGNC Symbol;Acc:HGNC:19152]5453.1280.0365No
3ELOVL3ELOVL fatty acid elongase 3 [Source:HGNC Symbol;Acc:HGNC:18047]7102.8390.0539No
4TEKT2tektin 2 [Source:HGNC Symbol;Acc:HGNC:11725]7612.7230.0734No
5IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]9142.4610.0882No
6DPEP3dipeptidase 3 [Source:HGNC Symbol;Acc:HGNC:23029]20281.4110.0689No
7ARL4AADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]23421.2230.0698No
8STAM2signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]26361.0570.0700No
9TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]28170.9670.0725No
10AGFG1ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]36020.6400.0562No
11CCT6Bchaperonin containing TCP1 subunit 6B [Source:HGNC Symbol;Acc:HGNC:1621]38500.5430.0537No
12PAPOLBpoly(A) polymerase beta [Source:HGNC Symbol;Acc:HGNC:15970]39090.5190.0561No
13DDX4DEAD-box helicase 4 [Source:HGNC Symbol;Acc:HGNC:18700]40250.4780.0566No
14RAD17RAD17 checkpoint clamp loader component [Source:HGNC Symbol;Acc:HGNC:9807]44170.4660.0496No
15PGS1phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]48980.3160.0391No
16HSPA1Lheat shock protein family A (Hsp70) member 1 like [Source:HGNC Symbol;Acc:HGNC:5234]51740.2210.0333No
17CSNK2A2casein kinase 2 alpha 2 [Source:HGNC Symbol;Acc:HGNC:2459]52500.2030.0329No
18PIAS2protein inhibitor of activated STAT 2 [Source:HGNC Symbol;Acc:HGNC:17311]53060.1840.0328No
19NAA11N-alpha-acetyltransferase 11, NatA catalytic subunit [Source:HGNC Symbol;Acc:HGNC:28125]56160.1060.0252No
20SCG5secretogranin V [Source:HGNC Symbol;Acc:HGNC:10816]61800.0000.0100No
21SCG3secretogranin III [Source:HGNC Symbol;Acc:HGNC:13707]61820.0000.0100No
22ADCYAP1adenylate cyclase activating polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:241]70270.000-0.0129No
23ART3ADP-ribosyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:725]71360.000-0.0158No
24CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]72410.000-0.0186No
25ZC2HC1Czinc finger C2HC-type containing 1C [Source:HGNC Symbol;Acc:HGNC:20354]79580.000-0.0380No
26HOXB1homeobox B1 [Source:HGNC Symbol;Acc:HGNC:5111]85290.000-0.0534No
27ADAM2ADAM metallopeptidase domain 2 [Source:HGNC Symbol;Acc:HGNC:198]86090.000-0.0555No
28ADAD1adenosine deaminase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30713]87630.000-0.0597No
29CAMK4calcium/calmodulin dependent protein kinase IV [Source:HGNC Symbol;Acc:HGNC:1464]87850.000-0.0602No
30CRISP2cysteine rich secretory protein 2 [Source:HGNC Symbol;Acc:HGNC:12024]88270.000-0.0614No
31NPY5Rneuropeptide Y receptor Y5 [Source:HGNC Symbol;Acc:HGNC:7958]88340.000-0.0615No
32DMRT1doublesex and mab-3 related transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2934]92830.000-0.0736No
33NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]94000.000-0.0768No
34GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]96930.000-0.0847No
35TULP2TUB like protein 2 [Source:HGNC Symbol;Acc:HGNC:12424]98680.000-0.0894No
36CFTRCF transmembrane conductance regulator [Source:HGNC Symbol;Acc:HGNC:1884]99040.000-0.0903No
37LDHClactate dehydrogenase C [Source:HGNC Symbol;Acc:HGNC:6544]108790.000-0.1167No
38CLGNcalmegin [Source:HGNC Symbol;Acc:HGNC:2060]113500.000-0.1294No
39PRM2protamine 2 [Source:HGNC Symbol;Acc:HGNC:9448]113560.000-0.1295No
40SEPTIN4septin 4 [Source:HGNC Symbol;Acc:HGNC:9165]115360.000-0.1344No
41RPL39Lribosomal protein L39 like [Source:HGNC Symbol;Acc:HGNC:17094]116560.000-0.1376No
42JAM3junctional adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:15532]118980.000-0.1441No
43GAD1glutamate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:4092]123230.000-0.1556No
44THEGtheg spermatid protein [Source:HGNC Symbol;Acc:HGNC:13706]125410.000-0.1615No
45ALOX15arachidonate 15-lipoxygenase [Source:HGNC Symbol;Acc:HGNC:433]126120.000-0.1634No
46TCP11t-complex 11 [Source:HGNC Symbol;Acc:HGNC:11658]143310.000-0.2099No
47TNP2transition protein 2 [Source:HGNC Symbol;Acc:HGNC:11952]148650.000-0.2243No
48TNP1transition protein 1 [Source:HGNC Symbol;Acc:HGNC:11951]148670.000-0.2243No
49HTR5A5-hydroxytryptamine receptor 5A [Source:HGNC Symbol;Acc:HGNC:5300]155220.000-0.2420No
50CLVS1clavesin 1 [Source:HGNC Symbol;Acc:HGNC:23139]156480.000-0.2454No
51MTNR1Amelatonin receptor 1A [Source:HGNC Symbol;Acc:HGNC:7463]157340.000-0.2477No
52DCCDCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]159320.000-0.2530No
53ACTL7Bactin like 7B [Source:HGNC Symbol;Acc:HGNC:162]160120.000-0.2552No
54GPR182G protein-coupled receptor 182 [Source:HGNC Symbol;Acc:HGNC:13708]163200.000-0.2635No
55GAPDHSglyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:HGNC:24864]164280.000-0.2664No
56AKAP4A-kinase anchoring protein 4 [Source:HGNC Symbol;Acc:HGNC:374]165860.000-0.2706No
57DMC1DNA meiotic recombinase 1 [Source:HGNC Symbol;Acc:HGNC:2927]168540.000-0.2778No
58TKTL1transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]171900.000-0.2869No
59HBZhemoglobin subunit zeta [Source:HGNC Symbol;Acc:HGNC:4835]172370.000-0.2881No
60SYCP1synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]178410.000-0.3045No
61DNAJB8DnaJ heat shock protein family (Hsp40) member B8 [Source:HGNC Symbol;Acc:HGNC:23699]185190.000-0.3228No
62IL12RB2interleukin 12 receptor subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:5972]196620.000-0.3537No
63MEP1Bmeprin A subunit beta [Source:HGNC Symbol;Acc:HGNC:7020]201240.000-0.3661No
64ACRV1acrosomal vesicle protein 1 [Source:HGNC Symbol;Acc:HGNC:127]203310.000-0.3717No
65TSSK2testis specific serine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11401]214950.000-0.4032No
66SNAP91synaptosome associated protein 91 [Source:HGNC Symbol;Acc:HGNC:14986]216300.000-0.4068No
67CST8cystatin 8 [Source:HGNC Symbol;Acc:HGNC:2480]216680.000-0.4078No
68OAZ3ornithine decarboxylase antizyme 3 [Source:HGNC Symbol;Acc:HGNC:8097]227860.000-0.4380No
69ODF1outer dense fiber of sperm tails 1 [Source:HGNC Symbol;Acc:HGNC:8113]235120.000-0.4577No
70ZNRF4zinc and ring finger 4 [Source:HGNC Symbol;Acc:HGNC:17726]235530.000-0.4587No
71ACEangiotensin I converting enzyme [Source:HGNC Symbol;Acc:HGNC:2707]242490.000-0.4776No
72MAP7microtubule associated protein 7 [Source:HGNC Symbol;Acc:HGNC:6869]245460.000-0.4856No
73SLC2A5solute carrier family 2 member 5 [Source:HGNC Symbol;Acc:HGNC:11010]246300.000-0.4878No
74PCSK1Nproprotein convertase subtilisin/kexin type 1 inhibitor [Source:HGNC Symbol;Acc:HGNC:17301]254940.000-0.5112No
75SHESrc homology 2 domain containing E [Source:HGNC Symbol;Acc:HGNC:27004]256210.000-0.5146No
76H1-6H1.6 linker histone, cluster member [Source:HGNC Symbol;Acc:HGNC:4720]276690.000-0.5700No
77DDX25DEAD-box helicase 25 [Source:HGNC Symbol;Acc:HGNC:18698]280470.000-0.5802No
78IP6K1inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]28349-0.066-0.5878No
79TSNtranslin [Source:HGNC Symbol;Acc:HGNC:12379]28522-0.109-0.5916No
80YBX2Y-box binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17948]28763-0.173-0.5968No
81TALDO1transaldolase 1 [Source:HGNC Symbol;Acc:HGNC:11559]29213-0.288-0.6067No
82CLPBcaseinolytic mitochondrial matrix peptidase chaperone subunit B [Source:HGNC Symbol;Acc:HGNC:30664]29588-0.383-0.6139No
83CHFRcheckpoint with forkhead and ring finger domains [Source:HGNC Symbol;Acc:HGNC:20455]29605-0.389-0.6114No
84PEBP1phosphatidylethanolamine binding protein 1 [Source:HGNC Symbol;Acc:HGNC:8630]29669-0.408-0.6099No
85PDHA2pyruvate dehydrogenase E1 subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:8807]29758-0.431-0.6090No
86PHKG2phosphorylase kinase catalytic subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:8931]29769-0.435-0.6059No
87PSMG1proteasome assembly chaperone 1 [Source:HGNC Symbol;Acc:HGNC:3043]30116-0.531-0.6112No
88VDAC3voltage dependent anion channel 3 [Source:HGNC Symbol;Acc:HGNC:12674]30433-0.596-0.6152No
89SIRT1sirtuin 1 [Source:HGNC Symbol;Acc:HGNC:14929]30622-0.658-0.6152No
90ZPBPzona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]30925-0.745-0.6177Yes
91GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]31053-0.790-0.6151Yes
92BRAFB-Raf proto-oncogene, serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1097]31128-0.801-0.6109Yes
93MTORmechanistic target of rapamycin kinase [Source:HGNC Symbol;Acc:HGNC:3942]31224-0.836-0.6071Yes
94TUBA3Ctubulin alpha 3c [Source:HGNC Symbol;Acc:HGNC:12408]31282-0.856-0.6021Yes
95NOS1nitric oxide synthase 1 [Source:HGNC Symbol;Acc:HGNC:7872]31510-0.920-0.6012Yes
96MLLT10MLLT10 histone lysine methyltransferase DOT1L cofactor [Source:HGNC Symbol;Acc:HGNC:16063]32013-1.097-0.6063Yes
97COILcoilin [Source:HGNC Symbol;Acc:HGNC:2184]32046-1.111-0.5987Yes
98CNIH2cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]32154-1.159-0.5927Yes
99GSTM3glutathione S-transferase mu 3 [Source:HGNC Symbol;Acc:HGNC:4635]32299-1.222-0.5872Yes
100ACRBPacrosin binding protein [Source:HGNC Symbol;Acc:HGNC:17195]32682-1.312-0.5875Yes
101GSG1germ cell associated 1 [Source:HGNC Symbol;Acc:HGNC:19716]32848-1.374-0.5814Yes
102ZC3H14zinc finger CCCH-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20509]33186-1.524-0.5788Yes
103CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]33303-1.578-0.5699Yes
104PGK2phosphoglycerate kinase 2 [Source:HGNC Symbol;Acc:HGNC:8898]33425-1.630-0.5606Yes
105PRKAR2Aprotein kinase cAMP-dependent type II regulatory subunit alpha [Source:HGNC Symbol;Acc:HGNC:9391]33433-1.634-0.5483Yes
106IFT88intraflagellar transport 88 [Source:HGNC Symbol;Acc:HGNC:20606]33513-1.669-0.5376Yes
107NF2neurofibromin 2 [Source:HGNC Symbol;Acc:HGNC:7773]33587-1.713-0.5264Yes
108PARP2poly(ADP-ribose) polymerase 2 [Source:HGNC Symbol;Acc:HGNC:272]33605-1.725-0.5137Yes
109POMCproopiomelanocortin [Source:HGNC Symbol;Acc:HGNC:9201]33675-1.740-0.5022Yes
110SPATA6spermatogenesis associated 6 [Source:HGNC Symbol;Acc:HGNC:18309]33921-1.879-0.4944Yes
111PHF7PHD finger protein 7 [Source:HGNC Symbol;Acc:HGNC:18458]33989-1.907-0.4816Yes
112GMCL1germ cell-less 1, spermatogenesis associated [Source:HGNC Symbol;Acc:HGNC:23843]33994-1.910-0.4670Yes
113IDEinsulin degrading enzyme [Source:HGNC Symbol;Acc:HGNC:5381]34028-1.929-0.4531Yes
114HSPA4Lheat shock protein family A (Hsp70) member 4 like [Source:HGNC Symbol;Acc:HGNC:17041]34218-2.035-0.4426Yes
115SLC12A2solute carrier family 12 member 2 [Source:HGNC Symbol;Acc:HGNC:10911]34324-2.099-0.4294Yes
116CHRM4cholinergic receptor muscarinic 4 [Source:HGNC Symbol;Acc:HGNC:1953]34396-2.127-0.4150Yes
117NPHP1nephrocystin 1 [Source:HGNC Symbol;Acc:HGNC:7905]34718-2.299-0.4060Yes
118TOPBP1DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]34837-2.379-0.3910Yes
119DBF4DBF4 zinc finger [Source:HGNC Symbol;Acc:HGNC:17364]34861-2.396-0.3732Yes
120RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35172-2.617-0.3615Yes
121EZH2enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]35361-2.726-0.3457Yes
122STRBPspermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]35527-2.874-0.3281Yes
123MAST2microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]35616-2.966-0.3077Yes
124TNNI3troponin I3, cardiac type [Source:HGNC Symbol;Acc:HGNC:11947]35674-3.047-0.2859Yes
125HSPA2heat shock protein family A (Hsp70) member 2 [Source:HGNC Symbol;Acc:HGNC:5235]35831-3.171-0.2658Yes
126AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]36154-3.490-0.2477Yes
127BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36172-3.498-0.2213Yes
128PCSK4proprotein convertase subtilisin/kexin type 4 [Source:HGNC Symbol;Acc:HGNC:8746]36177-3.510-0.1945Yes
129KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36388-3.732-0.1716Yes
130CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]36393-3.744-0.1430Yes
131NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]36508-3.891-0.1162Yes
132NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]36519-3.907-0.0865Yes
133CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36709-4.137-0.0599Yes
134TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]36941-4.548-0.0312Yes
135LPIN1lipin 1 [Source:HGNC Symbol;Acc:HGNC:13345]36962-4.5920.0035Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_SPERMATOGENESIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_SPERMATOGENESIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_SPERMATOGENESIS