Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#KO_LPS_versus_KO_NA.Nof1.cls
#KO_LPS_versus_KO_NA_repos
PhenotypeNof1.cls#KO_LPS_versus_KO_NA_repos
Upregulated in classKO_LPS
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.55222124
Normalized Enrichment Score (NES)1.280789
Nominal p-value0.06358381
FDR q-value0.08349366
FWER p-Value0.185
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]1314.4270.0505Yes
2ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]1574.3120.1024Yes
3ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1644.2860.1545Yes
4FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]2084.0840.2031Yes
5SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2433.9760.2507Yes
6JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]3773.5490.2904Yes
7SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]4173.4100.3310Yes
8SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]5183.1850.3671Yes
9ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]5933.0020.4017Yes
10BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]6302.9130.4363Yes
11TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]8342.5990.4625Yes
12TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]11382.1150.4801Yes
13WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]15801.7370.4894Yes
14PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]16981.6480.5063Yes
15UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]17821.5590.5231Yes
16XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]18271.5260.5406Yes
17SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]24101.1840.5393Yes
18HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]25241.1250.5500Yes
19BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]28660.9410.5522Yes
20APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]35220.6720.5427No
21NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]44130.4680.5244No
22CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]45310.4300.5265No
23BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]46990.3760.5266No
24SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]49740.2900.5227No
25SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]50980.2440.5224No
26PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]53950.1600.5163No
27ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]55840.1130.5126No
28ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]56070.1070.5133No
29CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]57260.0730.5110No
30CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]91630.0000.4183No
31CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]124350.0000.3299No
32TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]132840.0000.3071No
33NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]193730.0000.1427No
34LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]249310.000-0.0074No
35IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]252190.000-0.0151No
36MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28345-0.065-0.0987No
37RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]28392-0.082-0.0989No
38LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]28624-0.140-0.1035No
39FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]28875-0.200-0.1078No
40PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]29559-0.376-0.1216No
41TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]29662-0.406-0.1194No
42FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]30271-0.545-0.1292No
43HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]30281-0.549-0.1227No
44RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]30596-0.650-0.1233No
45SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]30758-0.697-0.1192No
46ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]31119-0.796-0.1192No
47SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]32973-1.441-0.1516No
48TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]33495-1.662-0.1454No
49THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]34746-2.313-0.1510No
50SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]35556-2.892-0.1375No
51SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]35941-3.304-0.1076No
52BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36066-3.397-0.0695No
53SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]36521-3.912-0.0340No
54KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36641-4.0490.0121No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING