Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetCHR13Q13
Enrichment Score (ES)-0.63957715
Normalized Enrichment Score (NES)-1.3504723
Nominal p-value0.025641026
FDR q-value0.363034
FWER p-Value0.995
Table: GSEA Results Summary



Fig 1: Enrichment plot: CHR13Q13   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LAMTOR3P1late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:39726]11941.9580.0275No
2UFM1ubiquitin fold modifier 1 [Source:HGNC Symbol;Acc:HGNC:20597]24631.1880.0294No
3GAPDHP34glyceraldehyde 3 phosphate dehydrogenase pseudogene 34 [Source:HGNC Symbol;Acc:HGNC:37786]31160.8980.0392No
4SUPT20HSPT20 homolog, SAGA complex component [Source:HGNC Symbol;Acc:HGNC:20596]50150.335-0.0018No
5HSPD1P9heat shock protein family D (Hsp60) member 1 pseudogene 9 [Source:HGNC Symbol;Acc:HGNC:35132]51450.3000.0038No
6EIF4A1P5eukaryotic translation initiation factor 4A1 pseudogene 5 [Source:HGNC Symbol;Acc:HGNC:37924]52060.2850.0109No
7EEF1DP3eukaryotic translation elongation factor 1 delta pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:30486]56930.1680.0029No
8CSNK1A1Lcasein kinase 1 alpha 1 like [Source:HGNC Symbol;Acc:HGNC:20289]58720.1290.0020No
9STARD13-ASSTARD13 antisense RNA [Source:HGNC Symbol;Acc:HGNC:40873]68420.000-0.0242No
10FREM2FRAS1 related extracellular matrix 2 [Source:HGNC Symbol;Acc:HGNC:25396]70040.000-0.0285No
11CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]76410.000-0.0457No
12SOHLH2spermatogenesis and oogenesis specific basic helix-loop-helix 2 [Source:HGNC Symbol;Acc:HGNC:26026]80170.000-0.0558No
13NDE1P2nudE neurodevelopment protein 1 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:49116]85000.000-0.0689No
14LINC01048long intergenic non-protein coding RNA 1048 [Source:HGNC Symbol;Acc:HGNC:49042]91700.000-0.0869No
15FREM2-AS1FREM2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:39964]95030.000-0.0959No
16POSTNperiostin [Source:HGNC Symbol;Acc:HGNC:16953]103170.000-0.1179No
17TCEAL4P1transcription elongation factor A like 4 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:39582]104190.000-0.1206No
18RNU5A-4PRNA, U5A small nuclear 4, pseudogene [Source:HGNC Symbol;Acc:HGNC:42521]105660.000-0.1245No
19SERTM1serine rich and transmembrane domain containing 1 [Source:HGNC Symbol;Acc:HGNC:33792]107240.000-0.1288No
20CCDC169-SOHLH2CCDC169-SOHLH2 readthrough [Source:HGNC Symbol;Acc:HGNC:38866]109350.000-0.1344No
21STOML3stomatin like 3 [Source:HGNC Symbol;Acc:HGNC:19420]113980.000-0.1469No
22N4BP2L2-IT2N4BPL2 intronic transcript 2 [Source:HGNC Symbol;Acc:HGNC:25038]115150.000-0.1501No
23RXFP2relaxin family peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:17318]117720.000-0.1570No
24RN7SKP1RN7SK pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:42619]117830.000-0.1573No
25LINC00366long intergenic non-protein coding RNA 366 [Source:HGNC Symbol;Acc:HGNC:42688]130440.000-0.1913No
26TOMM22P3TOMM22 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:38739]132020.000-0.1955No
27LINC02344long intergenic non-protein coding RNA 2344 [Source:HGNC Symbol;Acc:HGNC:53264]136940.000-0.2088No
28LINC02343long intergenic non-protein coding RNA 2343 [Source:HGNC Symbol;Acc:HGNC:53263]136950.000-0.2088No
29LINC02334long intergenic non-protein coding RNA 2334 [Source:HGNC Symbol;Acc:HGNC:53254]137060.000-0.2091No
30RNY1P4RNY1 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:42481]139670.000-0.2161No
31IFIT1P1interferon induced protein with tetratricopeptide repeats 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:5408]140510.000-0.2183No
32RNU6-71PRNA, U6 small nuclear 71, pseudogene [Source:HGNC Symbol;Acc:HGNC:42561]153710.000-0.2540No
33MAB21L1mab-21 like 1 [Source:HGNC Symbol;Acc:HGNC:6757]158840.000-0.2678No
34KLklotho [Source:HGNC Symbol;Acc:HGNC:6344]162170.000-0.2768No
35VDAC1P12voltage dependent anion channel 1 pseudogene 12 [Source:HGNC Symbol;Acc:HGNC:39680]162800.000-0.2785No
36PHBP13prohibitin pseudogene 13 [Source:HGNC Symbol;Acc:HGNC:39292]163930.000-0.2815No
37ZAR1Lzygote arrest 1 like [Source:HGNC Symbol;Acc:HGNC:37116]164100.000-0.2819No
38SCAND3P1SCAN domain containing 3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:42037]169760.000-0.2972No
39SPART-AS1SPART antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:39933]178720.000-0.3214No
40PLA2G12AP2phospholipase A2 group XIIA pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39249]179070.000-0.3223No
41GAMTP2guanidinoacetate N-methyltransferase pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:37697]193300.000-0.3607No
42FRY-AS1FRY antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:39725]198460.000-0.3746No
43STARD13StAR related lipid transfer domain containing 13 [Source:HGNC Symbol;Acc:HGNC:19164]199990.000-0.3787No
44STARD13-IT1STARD13 intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:41453]206440.000-0.3961No
45ARL2BPP3ADP ribosylation factor like GTPase 2 binding protein pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:39447]207760.000-0.3997No
46LINC00547long intergenic non-protein coding RNA 547 [Source:HGNC Symbol;Acc:HGNC:43682]211930.000-0.4109No
47LINC00571long intergenic non-protein coding RNA 571 [Source:HGNC Symbol;Acc:HGNC:43721]213050.000-0.4139No
48LINC00437long intergenic non-protein coding RNA 437 [Source:HGNC Symbol;Acc:HGNC:42772]216110.000-0.4221No
49LINC00423long intergenic non-protein coding RNA 423 [Source:HGNC Symbol;Acc:HGNC:42758]216310.000-0.4226No
50LINC00457long intergenic non-protein coding RNA 457 [Source:HGNC Symbol;Acc:HGNC:42805]217520.000-0.4259No
51LINC00445long intergenic non-protein coding RNA 445 [Source:HGNC Symbol;Acc:HGNC:42782]217730.000-0.4264No
52ATP8A2P2ATPase phospholipid transporting 8A2 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39663]222670.000-0.4397No
53SMAD9-IT1SMAD9 intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:39963]230530.000-0.4610No
54CCDC169coiled-coil domain containing 169 [Source:HGNC Symbol;Acc:HGNC:34361]232460.000-0.4661No
55RNA5SP26RNA, 5S ribosomal pseudogene 26 [Source:HGNC Symbol;Acc:HGNC:42602]235720.000-0.4749No
56PRDX3P3peroxiredoxin 3 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:39266]242030.000-0.4919No
57TRPC4transient receptor potential cation channel subfamily C member 4 [Source:HGNC Symbol;Acc:HGNC:12336]247830.000-0.5076No
58ANKRD26P2ankyrin repeat domain 26 pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:39687]252550.000-0.5203No
59H2ACP1H2AC histone family pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:42647]263080.000-0.5487No
60RNU6-56PRNA, U6 small nuclear 56, pseudogene [Source:HGNC Symbol;Acc:HGNC:42546]263920.000-0.5510No
61NBEAneurobeachin [Source:HGNC Symbol;Acc:HGNC:7648]275690.000-0.5828No
62DCLK1doublecortin like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2700]28894-0.148-0.6140No
63RPL29P28ribosomal protein L29 pseudogene 28 [Source:HGNC Symbol;Acc:HGNC:36842]29674-0.320-0.6253Yes
64PROSER1proline and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:20291]30001-0.322-0.6243Yes
65N4BP2L2NEDD4 binding protein 2 like 2 [Source:HGNC Symbol;Acc:HGNC:26916]30518-0.453-0.6244Yes
66ALG5ALG5 dolichyl-phosphate beta-glucosyltransferase [Source:HGNC Symbol;Acc:HGNC:20266]30882-0.553-0.6173Yes
67NHLRC3NHL repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:33751]31707-0.794-0.6154Yes
68SPARTspartin [Source:HGNC Symbol;Acc:HGNC:18514]32352-0.986-0.6027Yes
69PDS5BPDS5 cohesin associated factor B [Source:HGNC Symbol;Acc:HGNC:20418]32568-1.038-0.5768Yes
70EXOSC8exosome component 8 [Source:HGNC Symbol;Acc:HGNC:17035]32920-1.171-0.5506Yes
71RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]34281-1.756-0.5338Yes
72RFXAPregulatory factor X associated protein [Source:HGNC Symbol;Acc:HGNC:9988]34356-1.800-0.4808Yes
73BRCA2BRCA2 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1101]35281-2.295-0.4358Yes
74RPS12P24ribosomal protein S12 pseudogene 24 [Source:HGNC Symbol;Acc:HGNC:35561]35295-2.301-0.3660Yes
75SMAD9SMAD family member 9 [Source:HGNC Symbol;Acc:HGNC:6774]36005-2.870-0.2976Yes
76NXT1P1nuclear transport factor 2 like export factor 1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:39708]36027-2.899-0.2097Yes
77N4BP2L1NEDD4 binding protein 2 like 1 [Source:HGNC Symbol;Acc:HGNC:25037]36372-3.298-0.1184Yes
78FRYFRY microtubule binding protein [Source:HGNC Symbol;Acc:HGNC:20367]36989-4.5170.0027Yes
Table: GSEA details [plain text format]



Fig 2: CHR13Q13   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CHR13Q13: Random ES distribution   
Gene set null distribution of ES for CHR13Q13