Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetCHR6Q23
Enrichment Score (ES)-0.61162996
Normalized Enrichment Score (NES)-1.3219005
Nominal p-value0.035264485
FDR q-value0.44457233
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: CHR6Q23   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TNFAIP3TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]5312.9500.0532No
2PDE7Bphosphodiesterase 7B [Source:HGNC Symbol;Acc:HGNC:8792]9992.2020.0910No
3TBPL1TATA-box binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:11589]25251.1510.0762No
4ARG1arginase 1 [Source:HGNC Symbol;Acc:HGNC:663]26541.0870.0976No
5ALDH8A1aldehyde dehydrogenase 8 family member A1 [Source:HGNC Symbol;Acc:HGNC:15471]46370.4320.0539No
6BCLAF1BCL2 associated transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16863]49340.3580.0541No
7SLC35D3solute carrier family 35 member D3 [Source:HGNC Symbol;Acc:HGNC:15621]51560.2950.0549No
8RPS12ribosomal protein S12 [Source:HGNC Symbol;Acc:HGNC:10385]51610.2940.0615No
9MTFR2mitochondrial fission regulator 2 [Source:HGNC Symbol;Acc:HGNC:21115]54170.2370.0601No
10RPL35AP3ribosomal protein L35a pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:21117]58330.1350.0519No
11SGK1serum/glucocorticoid regulated kinase 1 [Source:HGNC Symbol;Acc:HGNC:10810]59850.1020.0502No
12HSPE1P21heat shock protein family E (Hsp10) member 1 pseudogene 21 [Source:HGNC Symbol;Acc:HGNC:49340]65690.0000.0344No
13MIR548H5microRNA 548h-5 [Source:HGNC Symbol;Acc:HGNC:41768]67250.0000.0302No
14MIR548A2microRNA 548a-2 [Source:HGNC Symbol;Acc:HGNC:32797]67890.0000.0285No
15SMLR1small leucine rich protein 1 [Source:HGNC Symbol;Acc:HGNC:44670]68950.0000.0257No
16LINC01312long intergenic non-protein coding RNA 1312 [Source:HGNC Symbol;Acc:HGNC:28525]71210.0000.0196No
17SLC2A12solute carrier family 2 member 12 [Source:HGNC Symbol;Acc:HGNC:18067]77240.0000.0033No
18HMGA1P7high mobility group AT-hook 1 pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:19122]77400.0000.0029No
19LINC01010long intergenic non-protein coding RNA 1010 [Source:HGNC Symbol;Acc:HGNC:48978]81610.000-0.0084No
20LINC01013long intergenic non-protein coding RNA 1013 [Source:HGNC Symbol;Acc:HGNC:48987]81660.000-0.0085No
21RBM11P1RNA binding motif protein 11 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:43743]105600.000-0.0732No
22RPS29P32ribosomal protein S29 pseudogene 32 [Source:HGNC Symbol;Acc:HGNC:52365]107040.000-0.0771No
23PBOV1prostate and breast cancer overexpressed 1 [Source:HGNC Symbol;Acc:HGNC:21079]108740.000-0.0817No
24HMGB1P17high mobility group box 1 pseudogene 17 [Source:HGNC Symbol;Acc:HGNC:39099]109320.000-0.0832No
25RN7SL408PRNA, 7SL, cytoplasmic 408, pseudogene [Source:HGNC Symbol;Acc:HGNC:46424]116060.000-0.1014No
26TAAR4Ptrace amine associated receptor 4, pseudogene [Source:HGNC Symbol;Acc:HGNC:31924]124230.000-0.1234No
27TAAR7Ptrace amine associated receptor 7, pseudogene [Source:HGNC Symbol;Acc:HGNC:31925]124550.000-0.1243No
28TAAR8trace amine associated receptor 8 [Source:HGNC Symbol;Acc:HGNC:14964]126440.000-0.1294No
29TAAR6trace amine associated receptor 6 [Source:HGNC Symbol;Acc:HGNC:20978]126450.000-0.1294No
30TAAR5trace amine associated receptor 5 [Source:HGNC Symbol;Acc:HGNC:30236]126470.000-0.1294No
31TAAR2trace amine associated receptor 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:4514]126490.000-0.1294No
32TAAR1trace amine associated receptor 1 [Source:HGNC Symbol;Acc:HGNC:17734]126520.000-0.1295No
33VNN1vanin 1 [Source:HGNC Symbol;Acc:HGNC:12705]127910.000-0.1332No
34VNN2vanin 2 [Source:HGNC Symbol;Acc:HGNC:12706]127920.000-0.1332No
35VNN3vanin 3 [Source:HGNC Symbol;Acc:HGNC:16431]127930.000-0.1332No
36MOXD1monooxygenase DBH like 1 [Source:HGNC Symbol;Acc:HGNC:21063]130700.000-0.1407No
37LINC00326long intergenic non-protein coding RNA 326 [Source:HGNC Symbol;Acc:HGNC:41926]130870.000-0.1411No
38LINC00271long intergenic non-protein coding RNA 271 [Source:HGNC Symbol;Acc:HGNC:32526]133490.000-0.1481No
39OR2A4olfactory receptor family 2 subfamily A member 4 [Source:HGNC Symbol;Acc:HGNC:14729]135500.000-0.1536No
40SAMD3sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]136340.000-0.1558No
41FTH1P26ferritin heavy chain 1 pseudogene 26 [Source:HGNC Symbol;Acc:HGNC:37644]143360.000-0.1747No
42IL22RA2interleukin 22 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:14901]144890.000-0.1789No
43LINC02539long intergenic non-protein coding RNA 2539 [Source:HGNC Symbol;Acc:HGNC:53572]146500.000-0.1832No
44LINC02528long intergenic non-protein coding RNA 2528 [Source:HGNC Symbol;Acc:HGNC:53554]146710.000-0.1837No
45SLC18B1solute carrier family 18 member B1 [Source:HGNC Symbol;Acc:HGNC:21573]153690.000-0.2026No
46ENPP1ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:3356]156840.000-0.2111No
47ENPP3ectonucleotide pyrophosphatase/phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:3358]156850.000-0.2111No
48NDUFS5P1NADH:ubiquinone oxidoreductase subunit S5 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:44039]158980.000-0.2168No
49SNORA33small nucleolar RNA, H/ACA box 33 [Source:HGNC Symbol;Acc:HGNC:32623]160820.000-0.2217No
50TMEM200Atransmembrane protein 200A [Source:HGNC Symbol;Acc:HGNC:21075]163540.000-0.2291No
51KRT8P42keratin 8 pseudogene 42 [Source:HGNC Symbol;Acc:HGNC:39876]164730.000-0.2322No
52RPL21P67ribosomal protein L21 pseudogene 67 [Source:HGNC Symbol;Acc:HGNC:36139]168540.000-0.2425No
53RN7SKP245RN7SK pseudogene 245 [Source:HGNC Symbol;Acc:HGNC:45969]181380.000-0.2772No
54MYB-AS1MYB antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:37457]181950.000-0.2787No
55MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]192450.000-0.3071No
56RNA5SP219RNA, 5S ribosomal pseudogene 219 [Source:HGNC Symbol;Acc:HGNC:43119]194890.000-0.3136No
57RNA5SP218RNA, 5S ribosomal pseudogene 218 [Source:HGNC Symbol;Acc:HGNC:43118]194900.000-0.3136No
58RNU4-18PRNA, U4 small nuclear 18, pseudogene [Source:HGNC Symbol;Acc:HGNC:46954]208340.000-0.3499No
59IL20RAinterleukin 20 receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:6003]220420.000-0.3826No
60MIR548AJ1microRNA 548aj-1 [Source:HGNC Symbol;Acc:HGNC:41884]223770.000-0.3916No
61CHCHD2P4coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:39588]224540.000-0.3937No
62OLIG3oligodendrocyte transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:18003]225970.000-0.3975No
63NHEG1neuroblastoma highly expressed 1 [Source:NCBI gene (formerly Entrezgene);Acc:100294720]233060.000-0.4166No
64AL138828.1novel transcript238740.000-0.4320No
65SNORD100small nucleolar RNA, C/D box 100 [Source:HGNC Symbol;Acc:HGNC:32763]240650.000-0.4371No
66SNORD101small nucleolar RNA, C/D box 101 [Source:HGNC Symbol;Acc:HGNC:32764]240670.000-0.4371No
67TCF21transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11632]252250.000-0.4684No
68IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]252570.000-0.4692No
69HLFP1HLF pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:41922]253450.000-0.4716No
70TAAR3Ptrace amine associated receptor 3, pseudogene [Source:HGNC Symbol;Acc:HGNC:4513]257130.000-0.4815No
71PERPp53 apoptosis effector related to PMP22 [Source:HGNC Symbol;Acc:HGNC:17637]265200.000-0.5033No
72CTAGE9CTAGE family member 9 [Source:HGNC Symbol;Acc:HGNC:37275]270890.000-0.5187No
73CCN2cellular communication network factor 2 [Source:HGNC Symbol;Acc:HGNC:2500]279900.000-0.5430No
74TARIDTCF21 antisense RNA inducing promoter demethylation [Source:HGNC Symbol;Acc:HGNC:50506]281670.000-0.5477No
75MAP7microtubule associated protein 7 [Source:HGNC Symbol;Acc:HGNC:6869]282450.000-0.5498No
76EEF1A1P36eukaryotic translation elongation factor 1 alpha 1 pseudogene 36 [Source:HGNC Symbol;Acc:HGNC:37914]28959-0.165-0.5653No
77MED23mediator complex subunit 23 [Source:HGNC Symbol;Acc:HGNC:2372]29476-0.293-0.5726No
78GAPDHP73glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 [Source:HGNC Symbol;Acc:HGNC:22956]29684-0.320-0.5708No
79HBS1LHBS1 like translational GTPase [Source:HGNC Symbol;Acc:HGNC:4834]30805-0.528-0.5890No
80TAAR9trace amine associated receptor 9 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:20977]31643-0.772-0.5939Yes
81RPL21P66ribosomal protein L21 pseudogene 66 [Source:HGNC Symbol;Acc:HGNC:36476]31903-0.849-0.5815Yes
82COX5BP2cytochrome c oxidase subunit 5B pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:2271]32151-0.923-0.5670Yes
83RPSAP42ribosomal protein SA pseudogene 42 [Source:HGNC Symbol;Acc:HGNC:36265]32165-0.927-0.5461Yes
84STX7syntaxin 7 [Source:HGNC Symbol;Acc:HGNC:11442]32393-0.999-0.5294Yes
85PEX7peroxisomal biogenesis factor 7 [Source:HGNC Symbol;Acc:HGNC:8860]32767-1.118-0.5139Yes
86BTF3L4P3basic transcription factor 3 like 4 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:39647]33259-1.304-0.4973Yes
87HMGB1P13high mobility group box 1 pseudogene 13 [Source:HGNC Symbol;Acc:HGNC:13318]33324-1.304-0.4691Yes
88AHI1Abelson helper integration site 1 [Source:HGNC Symbol;Acc:HGNC:21575]33370-1.326-0.4400Yes
89CCNG1P1cyclin G1 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:39177]33441-1.362-0.4107Yes
90EPB41L2erythrocyte membrane protein band 4.1 like 2 [Source:HGNC Symbol;Acc:HGNC:3379]33665-1.454-0.3834Yes
91MAP3K5mitogen-activated protein kinase kinase kinase 5 [Source:HGNC Symbol;Acc:HGNC:6857]34237-1.735-0.3591Yes
92FAM8A6Pfamily with sequence similarity 8 member A6, pseudogene [Source:HGNC Symbol;Acc:HGNC:16377]34609-1.945-0.3245Yes
93MTCYBP4MT-CYB pseudogene 4 [Source:HGNC Symbol;Acc:HGNC:41923]34669-1.945-0.2816Yes
94L3MBTL3L3MBTL histone methyl-lysine binding protein 3 [Source:HGNC Symbol;Acc:HGNC:23035]35581-2.517-0.2485Yes
95EYA4EYA transcriptional coactivator and phosphatase 4 [Source:HGNC Symbol;Acc:HGNC:3522]35986-2.851-0.1941Yes
96ARFGEF3ARFGEF family member 3 [Source:HGNC Symbol;Acc:HGNC:21213]36050-2.934-0.1286Yes
97AKAP7A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]36129-3.016-0.0617Yes
98RPL23AP46ribosomal protein L23a pseudogene 46 [Source:HGNC Symbol;Acc:HGNC:35894]36699-3.8250.0106Yes
Table: GSEA details [plain text format]



Fig 2: CHR6Q23   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CHR6Q23: Random ES distribution   
Gene set null distribution of ES for CHR6Q23