Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetLEE_EARLY_T_LYMPHOCYTE_UP
Enrichment Score (ES)-0.7527577
Normalized Enrichment Score (NES)-1.6239243
Nominal p-value0.0
FDR q-value0.03614157
FWER p-Value0.493
Table: GSEA Results Summary



Fig 1: Enrichment plot: LEE_EARLY_T_LYMPHOCYTE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1RAPGEF5Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]9912.211-0.0127No
2SYKspleen associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11491]11701.983-0.0048No
3AEBP1AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]14791.696-0.0023No
4GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]17571.503-0.0002No
5SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]23881.222-0.0094No
6PALLDpalladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]24031.214-0.0020No
7CDC25Acell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]25401.1440.0016No
8GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]34600.780-0.0182No
9CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]35380.752-0.0155No
10GALNT7polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]36330.715-0.0135No
11LETM1leucine zipper and EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:6556]42880.520-0.0278No
12FAIMFas apoptotic inhibitory molecule [Source:HGNC Symbol;Acc:HGNC:18703]53220.260-0.0541No
13MIR646HGMIR646 host gene [Source:HGNC Symbol;Acc:HGNC:27659]81360.000-0.1302No
14HHIPhedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]82120.000-0.1322No
15TNFRSF21TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469]93790.000-0.1637No
16PON1paraoxonase 1 [Source:HGNC Symbol;Acc:HGNC:9204]108990.000-0.2048No
17CRNDEcolorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]115250.000-0.2217No
18RAG1recombination activating 1 [Source:HGNC Symbol;Acc:HGNC:9831]125700.000-0.2499No
19SCRN1secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]141760.000-0.2933No
20MZB1marginal zone B and B1 cell specific protein [Source:HGNC Symbol;Acc:HGNC:30125]147900.000-0.3099No
21TMSB15Athymosin beta 15a [Source:HGNC Symbol;Acc:HGNC:30744]171650.000-0.3741No
22PALM2AKAP2PALM2 and AKAP2 fusion [Source:HGNC Symbol;Acc:HGNC:33529]179830.000-0.3962No
23MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]192450.000-0.4303No
24CPVLcarboxypeptidase vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]208560.000-0.4738No
25NLGN4Xneuroligin 4 X-linked [Source:HGNC Symbol;Acc:HGNC:14287]228050.000-0.5265No
26ARPP21cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]258480.000-0.6087No
27TSHRthyroid stimulating hormone receptor [Source:HGNC Symbol;Acc:HGNC:12373]270680.000-0.6417No
28FAM72Cfamily with sequence similarity 72 member C [Source:HGNC Symbol;Acc:HGNC:30602]273680.000-0.6498No
29CD1ECD1e molecule [Source:HGNC Symbol;Acc:HGNC:1638]280090.000-0.6671No
30CD1BCD1b molecule [Source:HGNC Symbol;Acc:HGNC:1635]280120.000-0.6671No
31CD1ACD1a molecule [Source:HGNC Symbol;Acc:HGNC:1634]280130.000-0.6671No
32CD99CD99 molecule (Xg blood group) [Source:HGNC Symbol;Acc:HGNC:7082]281530.000-0.6709No
33GSE1Gse1 coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:28979]28741-0.106-0.6861No
34CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]28769-0.115-0.6861No
35PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]28881-0.144-0.6882No
36TUBB4Btubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771]28890-0.146-0.6875No
37MCM10minichromosome maintenance 10 replication initiation factor [Source:HGNC Symbol;Acc:HGNC:18043]29088-0.200-0.6915No
38KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]29461-0.290-0.6997No
39CENPWcentromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]29711-0.320-0.7044No
40GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]29718-0.320-0.7025No
41DNTTDNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]30344-0.403-0.7168No
42CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]30420-0.426-0.7161No
43TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]30615-0.478-0.7183No
44AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]31203-0.642-0.7301No
45RUFY3RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30285]31781-0.814-0.7405No
46LRR1leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]32236-0.949-0.7467Yes
47NSD2nuclear receptor binding SET domain protein 2 [Source:HGNC Symbol;Acc:HGNC:12766]32339-0.980-0.7432Yes
48RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]32433-1.015-0.7392Yes
49UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]32593-1.049-0.7368Yes
50CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]33007-1.207-0.7402Yes
51FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]33141-1.259-0.7358Yes
52BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]33403-1.341-0.7343Yes
53DIAPH3diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]33416-1.347-0.7260Yes
54CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]33668-1.457-0.7235Yes
55KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]33792-1.517-0.7171Yes
56LDLRAD4low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1224]33836-1.539-0.7084Yes
57BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]33841-1.541-0.6987Yes
58UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]33853-1.545-0.6891Yes
59RCAN1regulator of calcineurin 1 [Source:HGNC Symbol;Acc:HGNC:3040]33904-1.561-0.6804Yes
60MPP1membrane palmitoylated protein 1 [Source:HGNC Symbol;Acc:HGNC:7219]33938-1.585-0.6712Yes
61PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]33942-1.587-0.6611Yes
62PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]34106-1.671-0.6549Yes
63CEP128centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]34148-1.694-0.6451Yes
64NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]34387-1.816-0.6400Yes
65CEP70centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]34412-1.831-0.6289Yes
66CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]34458-1.861-0.6182Yes
67PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34472-1.873-0.6066Yes
68CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]34479-1.876-0.5948Yes
69KNL1kinetochore scaffold 1 [Source:HGNC Symbol;Acc:HGNC:24054]34480-1.878-0.5828Yes
70MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34493-1.883-0.5710Yes
71MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]34557-1.928-0.5604Yes
72GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]34589-1.943-0.5488Yes
73TUBBtubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]34768-1.957-0.5411Yes
74KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]34827-1.996-0.5299Yes
75CEP55centrosomal protein 55 [Source:HGNC Symbol;Acc:HGNC:1161]34833-1.999-0.5173Yes
76UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]34835-2.003-0.5045Yes
77KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]34903-2.041-0.4933Yes
78KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]35003-2.106-0.4825Yes
79TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35009-2.109-0.4691Yes
80NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]35034-2.123-0.4562Yes
81DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35073-2.150-0.4435Yes
82CENPUcentromere protein U [Source:HGNC Symbol;Acc:HGNC:21348]35083-2.154-0.4300Yes
83NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]35145-2.200-0.4175Yes
84TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]35199-2.244-0.4046Yes
85NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]35206-2.250-0.3904Yes
86BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]35269-2.283-0.3775Yes
87NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]35368-2.354-0.3651Yes
88ATAD2ATPase family AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]35483-2.425-0.3527Yes
89KIF15kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]35516-2.459-0.3378Yes
90CDCA2cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]35655-2.574-0.3251Yes
91RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]35689-2.604-0.3093Yes
92HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]35737-2.641-0.2937Yes
93HMGB3high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]35757-2.659-0.2772Yes
94MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]35760-2.660-0.2602Yes
95OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]35902-2.735-0.2466Yes
96ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]36019-2.892-0.2312Yes
97ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]36035-2.919-0.2130Yes
98MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]36044-2.930-0.1944Yes
99E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36073-2.962-0.1763Yes
100PRR11proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]36077-2.964-0.1574Yes
101NEIL3nei like DNA glycosylase 3 [Source:HGNC Symbol;Acc:HGNC:24573]36237-3.134-0.1417Yes
102SGO2shugoshin 2 [Source:HGNC Symbol;Acc:HGNC:30812]36374-3.300-0.1242Yes
103E2F2E2F transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3114]36416-3.365-0.1038Yes
104E2F7E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]36451-3.421-0.0829Yes
105DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]36482-3.462-0.0615Yes
106DSCC1DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]36657-3.730-0.0424Yes
107CXXC5CXXC finger protein 5 [Source:HGNC Symbol;Acc:HGNC:26943]36783-3.980-0.0203Yes
108TFDP2transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]36976-4.4730.0031Yes
Table: GSEA details [plain text format]



Fig 2: LEE_EARLY_T_LYMPHOCYTE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: LEE_EARLY_T_LYMPHOCYTE_UP: Random ES distribution   
Gene set null distribution of ES for LEE_EARLY_T_LYMPHOCYTE_UP