Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetLIANG_SILENCED_BY_METHYLATION_2
Enrichment Score (ES)0.81712395
Normalized Enrichment Score (NES)1.89458
Nominal p-value0.0
FDR q-value0.0036943187
FWER p-Value0.029
Table: GSEA Results Summary



Fig 1: Enrichment plot: LIANG_SILENCED_BY_METHYLATION_2   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SAA1serum amyloid A1 [Source:HGNC Symbol;Acc:HGNC:10513]224.9350.0608Yes
2CCL5C-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10632]314.8880.1214Yes
3PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]324.8870.1822Yes
4MX2MX dynamin like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:7533]404.8480.2423Yes
5SERPINB2serpin family B member 2 [Source:HGNC Symbol;Acc:HGNC:8584]544.7500.3010Yes
6MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]1104.4000.3543Yes
7IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]1154.3700.4085Yes
8IFIT1interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]1194.3570.4626Yes
9IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]2173.8600.5080Yes
10IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]2263.8270.5554Yes
11STAT1signal transducer and activator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:11362]3103.4340.5959Yes
12OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]3513.3220.6361Yes
13OAS22'-5'-oligoadenylate synthetase 2 [Source:HGNC Symbol;Acc:HGNC:8087]5212.9630.6684Yes
14TNFAIP3TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]5312.9500.7048Yes
15IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]5482.9090.7406Yes
16SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]6352.7630.7726Yes
17UCHL1ubiquitin C-terminal hydrolase L1 [Source:HGNC Symbol;Acc:HGNC:12513]8262.4140.7975Yes
18C3complement C3 [Source:HGNC Symbol;Acc:HGNC:1318]19491.3910.7845Yes
19IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]21571.3690.7960Yes
20CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]22061.3370.8113Yes
21HBEGFheparin binding EGF like growth factor [Source:HGNC Symbol;Acc:HGNC:3059]28131.0180.8076Yes
22IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]29100.9740.8171Yes
23H2AC18H2A clustered histone 18 [Source:HGNC Symbol;Acc:HGNC:4736]35500.7480.8092No
24INHBAinhibin subunit beta A [Source:HGNC Symbol;Acc:HGNC:6066]46230.4360.7856No
25IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]52130.2830.7733No
26CCL20C-C motif chemokine ligand 20 [Source:HGNC Symbol;Acc:HGNC:10619]64440.0000.7400No
27SP100SP100 nuclear antigen [Source:HGNC Symbol;Acc:HGNC:11206]65760.0000.7365No
28AREGamphiregulin [Source:HGNC Symbol;Acc:HGNC:651]73650.0000.7152No
29LCN2lipocalin 2 [Source:HGNC Symbol;Acc:HGNC:6526]110090.0000.6169No
30TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]124800.0000.5772No
31THBDthrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784]127370.0000.5703No
32BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]155510.0000.4943No
33H19H19 imprinted maternally expressed transcript [Source:HGNC Symbol;Acc:HGNC:4713]171490.0000.4512No
34ICAM1intercellular adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5344]183070.0000.4199No
35GAGE1G antigen 1 [Source:HGNC Symbol;Acc:HGNC:4098]188600.0000.4050No
36MMP1matrix metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:7155]191750.0000.3965No
37CXCL6C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643]195240.0000.3871No
38CXCL5C-X-C motif chemokine ligand 5 [Source:HGNC Symbol;Acc:HGNC:10642]195410.0000.3867No
39DHRS2dehydrogenase/reductase 2 [Source:HGNC Symbol;Acc:HGNC:18349]200700.0000.3725No
40PI3peptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:8947]201020.0000.3716No
41CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]216660.0000.3294No
42NT5E5'-nucleotidase ecto [Source:HGNC Symbol;Acc:HGNC:8021]218860.0000.3235No
43SLPIsecretory leukocyte peptidase inhibitor [Source:HGNC Symbol;Acc:HGNC:11092]224430.0000.3085No
44MAGEA12MAGE family member A12 [Source:HGNC Symbol;Acc:HGNC:6799]238820.0000.2697No
45MAGEA2MAGE family member A2 [Source:HGNC Symbol;Acc:HGNC:6800]240490.0000.2652No
46MAGEA3MAGE family member A3 [Source:HGNC Symbol;Acc:HGNC:6801]240540.0000.2651No
47MAGEA4MAGE family member A4 [Source:HGNC Symbol;Acc:HGNC:6802]240560.0000.2650No
48SSX2SSX family member 2 [Source:HGNC Symbol;Acc:HGNC:11336]245870.0000.2507No
49XAF1XIAP associated factor 1 [Source:HGNC Symbol;Acc:HGNC:30932]246690.0000.2485No
50IFI6interferon alpha inducible protein 6 [Source:HGNC Symbol;Acc:HGNC:4054]254580.0000.2273No
51KRT17keratin 17 [Source:HGNC Symbol;Acc:HGNC:6427]269700.0000.1865No
52CTAG1Bcancer/testis antigen 1B [Source:HGNC Symbol;Acc:HGNC:2491]273760.0000.1755No
53STC1stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]30519-0.4530.0963No
54S100A4S100 calcium binding protein A4 [Source:HGNC Symbol;Acc:HGNC:10494]31114-0.6180.0880No
55STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]32062-0.8950.0735No
56H2AC6H2A clustered histone 6 [Source:HGNC Symbol;Acc:HGNC:4733]32343-0.9820.0782No
57C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]33995-1.6170.0537No
58H2BC6H2B clustered histone 6 [Source:HGNC Symbol;Acc:HGNC:4753]35434-2.3970.0447No
Table: GSEA details [plain text format]



Fig 2: LIANG_SILENCED_BY_METHYLATION_2   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: LIANG_SILENCED_BY_METHYLATION_2: Random ES distribution   
Gene set null distribution of ES for LIANG_SILENCED_BY_METHYLATION_2