Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetGNF2_SMC4L1
Enrichment Score (ES)-0.7614179
Normalized Enrichment Score (NES)-1.6140723
Nominal p-value0.0
FDR q-value0.017464474
FWER p-Value0.129
Table: GSEA Results Summary



Fig 1: Enrichment plot: GNF2_SMC4L1   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GAR1GAR1 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14264]21651.364-0.0477No
2DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]22961.276-0.0410No
3EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]28471.004-0.0479No
4HNRNPABheterogeneous nuclear ribonucleoprotein A/B [Source:HGNC Symbol;Acc:HGNC:5034]31550.884-0.0492No
5CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]35380.752-0.0536No
6SRSF1serine and arginine rich splicing factor 1 [Source:HGNC Symbol;Acc:HGNC:10780]36970.690-0.0524No
7NUP153nucleoporin 153 [Source:HGNC Symbol;Acc:HGNC:8062]47400.404-0.0773No
8SNRPGsmall nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:HGNC:11163]48910.368-0.0784No
9METAP2methionyl aminopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:16672]53350.255-0.0884No
10MRPL35mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:14489]55770.200-0.0933No
11SNRPD1small nuclear ribonucleoprotein D1 polypeptide [Source:HGNC Symbol;Acc:HGNC:11158]56990.167-0.0952No
12PCCBpropionyl-CoA carboxylase subunit beta [Source:HGNC Symbol;Acc:HGNC:8654]61960.045-0.1083No
13ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]235090.000-0.5761No
14CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]28769-0.115-0.7173No
15ANP32Eacidic nuclear phosphoprotein 32 family member E [Source:HGNC Symbol;Acc:HGNC:16673]28920-0.154-0.7201No
16ANP32Bacidic nuclear phosphoprotein 32 family member B [Source:HGNC Symbol;Acc:HGNC:16677]29234-0.229-0.7268No
17FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]30083-0.340-0.7470No
18HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]30110-0.349-0.7449No
19CDC20cell division cycle 20 [Source:HGNC Symbol;Acc:HGNC:1723]30121-0.351-0.7424No
20SERBP1SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17860]30231-0.378-0.7423No
21SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]30279-0.388-0.7405No
22TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]30615-0.478-0.7458No
23DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]31195-0.639-0.7563Yes
24PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]31198-0.641-0.7513Yes
25AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]31203-0.642-0.7463Yes
26COPS3COP9 signalosome subunit 3 [Source:HGNC Symbol;Acc:HGNC:2239]31312-0.673-0.7439Yes
27SLBPstem-loop binding protein [Source:HGNC Symbol;Acc:HGNC:10904]31441-0.711-0.7417Yes
28SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit [Source:HGNC Symbol;Acc:HGNC:11465]31999-0.874-0.7498Yes
29ZWILCHzwilch kinetochore protein [Source:HGNC Symbol;Acc:HGNC:25468]32069-0.899-0.7445Yes
30MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]32174-0.931-0.7400Yes
31HNRNPA3P1heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 [Source:HGNC Symbol;Acc:HGNC:13729]32231-0.948-0.7339Yes
32RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]32433-1.015-0.7313Yes
33HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]32703-1.097-0.7299Yes
34VRK1VRK serine/threonine kinase 1 [Source:HGNC Symbol;Acc:HGNC:12718]32730-1.105-0.7218Yes
35DNAJC9DnaJ heat shock protein family (Hsp40) member C9 [Source:HGNC Symbol;Acc:HGNC:19123]32870-1.154-0.7164Yes
36PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32872-1.155-0.7072Yes
37EXOSC8exosome component 8 [Source:HGNC Symbol;Acc:HGNC:17035]32920-1.171-0.6992Yes
38FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]33141-1.259-0.6952Yes
39USP1ubiquitin specific peptidase 1 [Source:HGNC Symbol;Acc:HGNC:12607]33358-1.317-0.6905Yes
40SHCBP1SHC binding and spindle associated 1 [Source:HGNC Symbol;Acc:HGNC:29547]33583-1.426-0.6853Yes
41CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]33668-1.457-0.6760Yes
42POLE2DNA polymerase epsilon 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9178]33784-1.513-0.6671Yes
43KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]33792-1.517-0.6552Yes
44BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]33841-1.541-0.6442Yes
45MCM5minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:HGNC:6948]33849-1.543-0.6322Yes
46DHFRdihydrofolate reductase [Source:HGNC Symbol;Acc:HGNC:2861]33905-1.561-0.6213Yes
47CDCA8cell division cycle associated 8 [Source:HGNC Symbol;Acc:HGNC:14629]34050-1.644-0.6121Yes
48PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]34106-1.671-0.6003Yes
49SMC2structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]34241-1.737-0.5901Yes
50RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]34281-1.756-0.5773Yes
51DEKDEK proto-oncogene [Source:HGNC Symbol;Acc:HGNC:2768]34341-1.793-0.5646Yes
52PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34472-1.873-0.5532Yes
53MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34493-1.883-0.5388Yes
54MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]34557-1.928-0.5252Yes
55GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]34589-1.943-0.5106Yes
56NASPnuclear autoantigenic sperm protein [Source:HGNC Symbol;Acc:HGNC:7644]34776-1.960-0.5001Yes
57RACGAP1Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]34869-2.020-0.4865Yes
58KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]34903-2.041-0.4712Yes
59SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]34967-2.085-0.4563Yes
60CKAP2cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1990]34988-2.096-0.4402Yes
61TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35009-2.109-0.4240Yes
62PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35024-2.115-0.4076Yes
63NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]35034-2.123-0.3910Yes
64CCNA2cyclin A2 [Source:HGNC Symbol;Acc:HGNC:1578]35057-2.142-0.3746Yes
65DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35073-2.150-0.3579Yes
66RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35074-2.151-0.3408Yes
67RRM1ribonucleotide reductase catalytic subunit M1 [Source:HGNC Symbol;Acc:HGNC:10451]35109-2.175-0.3245Yes
68TMPOthymopoietin [Source:HGNC Symbol;Acc:HGNC:11875]35150-2.203-0.3081Yes
69TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]35199-2.244-0.2915Yes
70NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]35206-2.250-0.2738Yes
71CENPFcentromere protein F [Source:HGNC Symbol;Acc:HGNC:1857]35334-2.329-0.2588Yes
72DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]35634-2.552-0.2466Yes
73MCM7minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]35642-2.564-0.2264Yes
74GINS2GINS complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:24575]35670-2.585-0.2066Yes
75HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]35737-2.641-0.1874Yes
76CBX3chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]35784-2.687-0.1673Yes
77H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]35972-2.829-0.1499Yes
78ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]36035-2.919-0.1284Yes
79FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36042-2.928-0.1053Yes
80E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36073-2.962-0.0826Yes
81FBXO5F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]36148-3.036-0.0605Yes
82DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]36482-3.462-0.0420Yes
83MSH2mutS homolog 2 [Source:HGNC Symbol;Acc:HGNC:7325]36496-3.487-0.0147Yes
84GMNNgeminin DNA replication inhibitor [Source:HGNC Symbol;Acc:HGNC:17493]36724-3.8630.0099Yes
Table: GSEA details [plain text format]



Fig 2: GNF2_SMC4L1   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GNF2_SMC4L1: Random ES distribution   
Gene set null distribution of ES for GNF2_SMC4L1