Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.4783839
Normalized Enrichment Score (NES)1.263179
Nominal p-value0.01980198
FDR q-value0.16442443
FWER p-Value0.61
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]604.7030.0202Yes
2SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]684.6380.0415Yes
3MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]814.5870.0624Yes
4BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]1024.4670.0826Yes
5CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]1144.3840.1026Yes
6ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]1324.2970.1221Yes
7DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]1394.2470.1416Yes
8EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]1734.0540.1595Yes
9TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]1784.0250.1781Yes
10GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]2133.8680.1951Yes
11ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]2203.8420.2128Yes
12SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2393.7640.2297Yes
13LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]2763.5730.2453Yes
14ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]3403.3600.2592Yes
15JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]3713.2860.2736Yes
16GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]5492.9080.2823Yes
17TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]5932.7900.2941Yes
18C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]6652.7120.3047Yes
19UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]7112.6160.3156Yes
20RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]8042.4610.3245Yes
21RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]8902.2920.3329Yes
22ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]9822.2310.3407Yes
23STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]10192.1760.3499Yes
24NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]11202.0480.3567Yes
25MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]11791.9700.3642Yes
26MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]11891.9600.3731Yes
27TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]12201.9340.3812Yes
28TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]12351.9130.3897Yes
29TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]13011.8690.3966Yes
30KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]13301.8420.4044Yes
31ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]14391.7270.4095Yes
32PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]14981.6850.4157Yes
33ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]15091.6780.4232Yes
34NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]15191.6700.4307Yes
35HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]17581.5030.4313Yes
36LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]18711.4410.4349Yes
37GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]18831.4340.4412Yes
38ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]18951.4300.4476Yes
39SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]19441.3930.4527Yes
40BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]21521.3710.4535Yes
41EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]23631.2340.4535Yes
42TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]26171.1060.4518Yes
43PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]26601.0840.4557Yes
44WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]28201.0130.4561Yes
45ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]29050.9750.4583Yes
46RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]29390.9610.4619Yes
47FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]30340.9280.4636Yes
48ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]30790.9110.4667Yes
49PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]31460.8870.4690Yes
50APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]33430.8210.4675Yes
51TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]33890.8050.4700Yes
52MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]34420.7850.4722Yes
53NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]35460.7490.4729Yes
54MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]37710.6880.4700Yes
55MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]38690.6520.4704Yes
56EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]39490.6250.4712Yes
57DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]39790.6150.4733Yes
58DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]40400.5960.4744Yes
59MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]40690.5850.4764Yes
60EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]40970.5780.4783Yes
61LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]43080.5190.4750Yes
62ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]43610.5070.4760Yes
63DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]44370.4860.4762Yes
64FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]44400.4860.4784Yes
65FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]45540.4540.4774No
66GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]47310.4070.4745No
67UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]48260.3870.4738No
68UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]48350.3860.4754No
69USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]49250.3600.4746No
70BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]51520.2960.4699No
71ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]52120.2830.4696No
72SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]52880.2700.4688No
73TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]53600.2490.4680No
74RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]53710.2460.4689No
75SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]55540.2060.4649No
76GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]55830.1980.4651No
77B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]59590.1090.4554No
78FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]61640.0550.4502No
79VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]62410.0340.4483No
80MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]63330.0130.4459No
81ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]66930.0000.4361No
82FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]69670.0000.4288No
83TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]87210.0000.3813No
84C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]94160.0000.3625No
85ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]97720.0000.3529No
86NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]99150.0000.3490No
87NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]109030.0000.3223No
88CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]110380.0000.3186No
89ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]115640.0000.3044No
90IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]118810.0000.2959No
91PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]120980.0000.2900No
92CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]124020.0000.2818No
93TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]125680.0000.2773No
94GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]128690.0000.2692No
95GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]129950.0000.2658No
96ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]133390.0000.2565No
97TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]135370.0000.2512No
98SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]137710.0000.2449No
99TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]143410.0000.2295No
100SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]159360.0000.1863No
101FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]169940.0000.1577No
102RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]169960.0000.1576No
103VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]173530.0000.1480No
104PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]176700.0000.1394No
105DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]185410.0000.1159No
106BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]191470.0000.0995No
107BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]191490.0000.0995No
108FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]207510.0000.0561No
109LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]208200.0000.0542No
110LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]208440.0000.0536No
111LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]211000.0000.0467No
112ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]232610.000-0.0118No
113GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]241740.000-0.0365No
114AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]246850.000-0.0503No
115RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]250840.000-0.0611No
116INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]250980.000-0.0614No
117TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]252560.000-0.0657No
118SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]263350.000-0.0949No
119C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]268950.000-0.1100No
120SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]28454-0.024-0.1521No
121RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]28608-0.065-0.1560No
122BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]28648-0.079-0.1567No
123ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]28809-0.123-0.1604No
124BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]28919-0.154-0.1627No
125CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]29102-0.203-0.1667No
126SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]29194-0.219-0.1681No
127STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]29457-0.289-0.1739No
128RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]29616-0.320-0.1767No
129DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]30009-0.325-0.1858No
130UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]30038-0.331-0.1850No
131MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]30076-0.339-0.1844No
132RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]30189-0.370-0.1857No
133LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]30273-0.386-0.1862No
134ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]30803-0.527-0.1981No
135REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]31042-0.600-0.2017No
136LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]31212-0.644-0.2033No
137KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]32101-0.907-0.2232No
138MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]32207-0.940-0.2217No
139ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]32228-0.946-0.2178No
140NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]32582-1.044-0.2226No
141PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]32683-1.082-0.2202No
142DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]32816-1.138-0.2185No
143SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]32913-1.169-0.2157No
144TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]32938-1.180-0.2109No
145CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]32961-1.189-0.2060No
146MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]33004-1.206-0.2015No
147H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]33312-1.304-0.2038No
148DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]33819-1.532-0.2104No
149CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]33847-1.543-0.2040No
150CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]33981-1.609-0.2001No
151TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]34082-1.656-0.1952No
152KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]34087-1.658-0.1876No
153DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]34160-1.700-0.1817No
154EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]34251-1.742-0.1760No
155ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]34295-1.764-0.1690No
156TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]34590-1.943-0.1680No
157NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]34608-1.945-0.1594No
158RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]34822-1.995-0.1559No
159PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]34919-2.051-0.1490No
160HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]34957-2.076-0.1404No
161QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]35291-2.300-0.1387No
162TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]35487-2.434-0.1327No
163PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]35987-2.851-0.1330No
164CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]35988-2.852-0.1198No
165AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]36021-2.893-0.1073No
166VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]36231-3.127-0.0984No
167REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]36321-3.222-0.0859No
168ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]36402-3.353-0.0725No
169TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36481-3.461-0.0586No
170CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]36748-3.884-0.0478No
171RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]36821-4.043-0.0310No
172KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]36855-4.118-0.0128No
173ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]36857-4.1240.0063No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN