Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetRB_DN.V1_UP
Enrichment Score (ES)-0.633494
Normalized Enrichment Score (NES)-1.3812579
Nominal p-value0.0072202166
FDR q-value0.12901817
FWER p-Value0.688
Table: GSEA Results Summary



Fig 1: Enrichment plot: RB_DN.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]604.7030.0273No
2MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]814.5870.0550No
3IER2immediate early response 2 [Source:HGNC Symbol;Acc:HGNC:28871]6982.6430.0547No
4GCLMglutamate-cysteine ligase modifier subunit [Source:HGNC Symbol;Acc:HGNC:4312]10142.1840.0596No
5SLC7A7solute carrier family 7 member 7 [Source:HGNC Symbol;Acc:HGNC:11065]10772.0980.0708No
6FBP1fructose-bisphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3606]12041.9510.0794No
7BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]12051.9490.0914No
8ST3GAL4ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:10864]13251.8490.0996No
9PLA2G6phospholipase A2 group VI [Source:HGNC Symbol;Acc:HGNC:9039]14181.7410.1078No
10PRKAB1protein kinase AMP-activated non-catalytic subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:9378]18661.4430.1046No
11ZSCAN22zinc finger and SCAN domain containing 22 [Source:HGNC Symbol;Acc:HGNC:4929]22371.3200.1028No
12ADGRE1adhesion G protein-coupled receptor E1 [Source:HGNC Symbol;Acc:HGNC:3336]25141.1620.1025No
13CRIP2cysteine rich protein 2 [Source:HGNC Symbol;Acc:HGNC:2361]37080.6890.0744No
14GAB3GRB2 associated binding protein 3 [Source:HGNC Symbol;Acc:HGNC:17515]37690.6890.0770No
15MDM2MDM2 proto-oncogene [Source:HGNC Symbol;Acc:HGNC:6973]39060.6400.0773No
16PRKCEprotein kinase C epsilon [Source:HGNC Symbol;Acc:HGNC:9401]39110.6380.0811No
17SIVA1SIVA1 apoptosis inducing factor [Source:HGNC Symbol;Acc:HGNC:17712]45290.4620.0673No
18MRPL49mitochondrial ribosomal protein L49 [Source:HGNC Symbol;Acc:HGNC:1176]48970.3680.0596No
19NUDT5nudix hydrolase 5 [Source:HGNC Symbol;Acc:HGNC:8052]51860.2890.0536No
20NXT1nuclear transport factor 2 like export factor 1 [Source:HGNC Symbol;Acc:HGNC:15913]52430.2780.0538No
21TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]53600.2490.0522No
22POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]54630.2260.0508No
23UCK1uridine-cytidine kinase 1 [Source:HGNC Symbol;Acc:HGNC:14859]60340.0900.0360No
24FXYD6FXYD domain containing ion transport regulator 6 [Source:HGNC Symbol;Acc:HGNC:4030]67020.0000.0179No
25HES1hes family bHLH transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:5192]72640.0000.0028No
26HEY2hes related family bHLH transcription factor with YRPW motif 2 [Source:HGNC Symbol;Acc:HGNC:4881]73680.000-0.0000No
27ARTNartemin [Source:HGNC Symbol;Acc:HGNC:727]75540.000-0.0050No
28TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]89670.000-0.0432No
29TNFRSF18TNF receptor superfamily member 18 [Source:HGNC Symbol;Acc:HGNC:11914]93700.000-0.0541No
30GRB7growth factor receptor bound protein 7 [Source:HGNC Symbol;Acc:HGNC:4567]99240.000-0.0690No
31PKHD1PKHD1 ciliary IPT domain containing fibrocystin/polyductin [Source:HGNC Symbol;Acc:HGNC:9016]99260.000-0.0691No
32GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]100290.000-0.0718No
33OVOL2ovo like zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:15804]107990.000-0.0926No
34LYNX1Ly6/neurotoxin 1 [Source:HGNC Symbol;Acc:HGNC:29604]116300.000-0.1151No
35IL36RNinterleukin 36 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:15561]125790.000-0.1407No
36DDIT4LDNA damage inducible transcript 4 like [Source:HGNC Symbol;Acc:HGNC:30555]134770.000-0.1650No
37MANSC1MANSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25505]139680.000-0.1782No
38PCDH10protocadherin 10 [Source:HGNC Symbol;Acc:HGNC:13404]147090.000-0.1982No
39NOXO1NADPH oxidase organizer 1 [Source:HGNC Symbol;Acc:HGNC:19404]155110.000-0.2199No
40DCTdopachrome tautomerase [Source:HGNC Symbol;Acc:HGNC:2709]160310.000-0.2339No
41PALMDpalmdelphin [Source:HGNC Symbol;Acc:HGNC:15846]167140.000-0.2524No
42SPOCK1SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:HGNC Symbol;Acc:HGNC:11251]170810.000-0.2623No
43SMARCA1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:HGNC:11097]198360.000-0.3368No
44SFRP1secreted frizzled related protein 1 [Source:HGNC Symbol;Acc:HGNC:10776]207130.000-0.3605No
45SNAP25synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]212920.000-0.3761No
46DUOXA1dual oxidase maturation factor 1 [Source:HGNC Symbol;Acc:HGNC:26507]232530.000-0.4291No
47TMEM54transmembrane protein 54 [Source:HGNC Symbol;Acc:HGNC:24143]249810.000-0.4758No
48TYRP1tyrosinase related protein 1 [Source:HGNC Symbol;Acc:HGNC:12450]268490.000-0.5263No
49GNB1LG protein subunit beta 1 like [Source:HGNC Symbol;Acc:HGNC:4397]28468-0.026-0.5699No
50ALPK3alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:17574]28622-0.071-0.5736No
51SLC2A9solute carrier family 2 member 9 [Source:HGNC Symbol;Acc:HGNC:13446]28722-0.100-0.5757No
52PLEKHA6pleckstrin homology domain containing A6 [Source:HGNC Symbol;Acc:HGNC:17053]28914-0.152-0.5799No
53MAN1B1mannosidase alpha class 1B member 1 [Source:HGNC Symbol;Acc:HGNC:6823]29253-0.232-0.5876No
54TKFCtriokinase and FMN cyclase [Source:HGNC Symbol;Acc:HGNC:24552]29452-0.286-0.5912No
55AHCYadenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]29477-0.293-0.5900No
56IFT27intraflagellar transport 27 [Source:HGNC Symbol;Acc:HGNC:18626]30050-0.333-0.6035No
57EI24EI24 autophagy associated transmembrane protein [Source:HGNC Symbol;Acc:HGNC:13276]30405-0.421-0.6104No
58NANSN-acetylneuraminate synthase [Source:HGNC Symbol;Acc:HGNC:19237]30431-0.428-0.6085No
59SLC24A1solute carrier family 24 member 1 [Source:HGNC Symbol;Acc:HGNC:10975]30852-0.545-0.6165No
60TIMELESStimeless circadian regulator [Source:HGNC Symbol;Acc:HGNC:11813]30948-0.574-0.6155No
61SLBPstem-loop binding protein [Source:HGNC Symbol;Acc:HGNC:10904]31441-0.711-0.6245No
62BAZ1Bbromodomain adjacent to zinc finger domain 1B [Source:HGNC Symbol;Acc:HGNC:961]31682-0.784-0.6261No
63ZW10zw10 kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13194]31728-0.801-0.6224No
64CTDSP1CTD small phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:21614]31776-0.811-0.6187No
65PCBP2poly(rC) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8648]32017-0.879-0.6198No
66AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]32526-1.025-0.6272Yes
67TIPINTIMELESS interacting protein [Source:HGNC Symbol;Acc:HGNC:30750]32574-1.041-0.6220Yes
68HAT1histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]32703-1.097-0.6187Yes
69DNAJC9DnaJ heat shock protein family (Hsp40) member C9 [Source:HGNC Symbol;Acc:HGNC:19123]32870-1.154-0.6161Yes
70PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32872-1.155-0.6090Yes
71MAPK13mitogen-activated protein kinase 13 [Source:HGNC Symbol;Acc:HGNC:6875]32893-1.162-0.6024Yes
72MRPL45mitochondrial ribosomal protein L45 [Source:HGNC Symbol;Acc:HGNC:16651]33224-1.297-0.6034Yes
73STUB1STIP1 homology and U-box containing protein 1 [Source:HGNC Symbol;Acc:HGNC:11427]33440-1.362-0.6008Yes
74ACOX3acyl-CoA oxidase 3, pristanoyl [Source:HGNC Symbol;Acc:HGNC:121]33692-1.469-0.5985Yes
75MMGT1membrane magnesium transporter 1 [Source:HGNC Symbol;Acc:HGNC:28100]33758-1.500-0.5911Yes
76POLE2DNA polymerase epsilon 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9178]33784-1.513-0.5824Yes
77TUBG1tubulin gamma 1 [Source:HGNC Symbol;Acc:HGNC:12417]33851-1.544-0.5747Yes
78PLXNB2plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]33917-1.571-0.5668Yes
79PEX11Bperoxisomal biogenesis factor 11 beta [Source:HGNC Symbol;Acc:HGNC:8853]33930-1.582-0.5574Yes
80RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]34281-1.756-0.5560Yes
81PPM1Mprotein phosphatase, Mg2+/Mn2+ dependent 1M [Source:HGNC Symbol;Acc:HGNC:26506]34337-1.791-0.5465Yes
82VPS16VPS16 core subunit of CORVET and HOPS complexes [Source:HGNC Symbol;Acc:HGNC:14584]34442-1.852-0.5379Yes
83PDXPpyridoxal phosphatase [Source:HGNC Symbol;Acc:HGNC:30259]34450-1.855-0.5266Yes
84LCMT1leucine carboxyl methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:17557]34499-1.886-0.5163Yes
85DNA2DNA replication helicase/nuclease 2 [Source:HGNC Symbol;Acc:HGNC:2939]34818-1.991-0.5127Yes
86UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]34835-2.003-0.5008Yes
87GANCglucosidase alpha, neutral C [Source:HGNC Symbol;Acc:HGNC:4139]34896-2.037-0.4898Yes
88PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35024-2.115-0.4803Yes
89PMS2PMS1 homolog 2, mismatch repair system component [Source:HGNC Symbol;Acc:HGNC:9122]35055-2.140-0.4679Yes
90RAD51CRAD51 paralog C [Source:HGNC Symbol;Acc:HGNC:9820]35197-2.243-0.4579Yes
91MRE11MRE11 homolog, double strand break repair nuclease [Source:HGNC Symbol;Acc:HGNC:7230]35220-2.260-0.4446Yes
92RAD54LRAD54 like [Source:HGNC Symbol;Acc:HGNC:9826]35241-2.264-0.4312Yes
93STMN1stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]35394-2.370-0.4207Yes
94DCXRdicarbonyl and L-xylulose reductase [Source:HGNC Symbol;Acc:HGNC:18985]35399-2.377-0.4062Yes
95SLC35B2solute carrier family 35 member B2 [Source:HGNC Symbol;Acc:HGNC:16872]35460-2.410-0.3929Yes
96TPRA1transmembrane protein adipocyte associated 1 [Source:HGNC Symbol;Acc:HGNC:30413]35566-2.495-0.3804Yes
97SPICE1spindle and centriole associated protein 1 [Source:HGNC Symbol;Acc:HGNC:25083]35579-2.515-0.3653Yes
98MCM7minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]35642-2.564-0.3511Yes
99BBC3BCL2 binding component 3 [Source:HGNC Symbol;Acc:HGNC:17868]35677-2.592-0.3361Yes
100RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]35689-2.604-0.3204Yes
101CCNE1cyclin E1 [Source:HGNC Symbol;Acc:HGNC:1589]35738-2.643-0.3054Yes
102DNMT1DNA methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:2976]35959-2.812-0.2940Yes
103CLN6CLN6 transmembrane ER protein [Source:HGNC Symbol;Acc:HGNC:2077]36017-2.891-0.2777Yes
104ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]36019-2.892-0.2600Yes
105RPA1replication protein A1 [Source:HGNC Symbol;Acc:HGNC:10289]36075-2.964-0.2432Yes
106SULF2sulfatase 2 [Source:HGNC Symbol;Acc:HGNC:20392]36185-3.083-0.2272Yes
107ZFP30ZFP30 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:29555]36249-3.156-0.2094Yes
108MCM6minichromosome maintenance complex component 6 [Source:HGNC Symbol;Acc:HGNC:6949]36312-3.201-0.1914Yes
109MSH6mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]36407-3.364-0.1732Yes
110THRAthyroid hormone receptor alpha [Source:HGNC Symbol;Acc:HGNC:11796]36414-3.365-0.1527Yes
111NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36562-3.565-0.1347Yes
112PMM1phosphomannomutase 1 [Source:HGNC Symbol;Acc:HGNC:9114]36593-3.631-0.1131Yes
113EPHX1epoxide hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3401]36669-3.753-0.0921Yes
114CCNE2cyclin E2 [Source:HGNC Symbol;Acc:HGNC:1590]36717-3.856-0.0696Yes
115DNASE1L1deoxyribonuclease 1 like 1 [Source:HGNC Symbol;Acc:HGNC:2957]36744-3.884-0.0464Yes
116SLC2A8solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]36945-4.364-0.0249Yes
117NUMBLNUMB like endocytic adaptor protein [Source:HGNC Symbol;Acc:HGNC:8061]37022-4.6770.0018Yes
Table: GSEA details [plain text format]



Fig 2: RB_DN.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: RB_DN.V1_UP: Random ES distribution   
Gene set null distribution of ES for RB_DN.V1_UP