Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | greenberg_collapsed_to_symbols.Nof1.cls #WT_GAQ_versus_WT_NA.Nof1.cls #WT_GAQ_versus_WT_NA_repos |
| Phenotype | Nof1.cls#WT_GAQ_versus_WT_NA_repos |
| Upregulated in class | WT_GAQ |
| GeneSet | HALLMARK_ANGIOGENESIS |
| Enrichment Score (ES) | 0.55827653 |
| Normalized Enrichment Score (NES) | 1.1757834 |
| Nominal p-value | 0.19078948 |
| FDR q-value | 0.15110004 |
| FWER p-Value | 0.556 |
| SYMBOL | TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|
| 1 | TIMP1 | TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820] | 83 | 4.578 | 0.1408 | Yes |
| 2 | CCND2 | cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583] | 407 | 3.197 | 0.2320 | Yes |
| 3 | SPP1 | secreted phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11255] | 530 | 2.956 | 0.3211 | Yes |
| 4 | ITGAV | integrin subunit alpha V [Source:HGNC Symbol;Acc:HGNC:6150] | 783 | 2.497 | 0.3924 | Yes |
| 5 | PDGFA | platelet derived growth factor subunit A [Source:HGNC Symbol;Acc:HGNC:8799] | 817 | 2.434 | 0.4675 | Yes |
| 6 | LPL | lipoprotein lipase [Source:HGNC Symbol;Acc:HGNC:6677] | 1724 | 1.521 | 0.4906 | Yes |
| 7 | FGFR1 | fibroblast growth factor receptor 1 [Source:HGNC Symbol;Acc:HGNC:3688] | 2182 | 1.353 | 0.5206 | Yes |
| 8 | VCAN | versican [Source:HGNC Symbol;Acc:HGNC:2464] | 2278 | 1.289 | 0.5583 | Yes |
| 9 | PTK2 | protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611] | 5150 | 0.296 | 0.4901 | No |
| 10 | APP | amyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620] | 5812 | 0.137 | 0.4765 | No |
| 11 | VEGFA | vascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680] | 6032 | 0.090 | 0.4734 | No |
| 12 | APOH | apolipoprotein H [Source:HGNC Symbol;Acc:HGNC:616] | 6889 | 0.000 | 0.4503 | No |
| 13 | TNFRSF21 | TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469] | 9379 | 0.000 | 0.3831 | No |
| 14 | KCNJ8 | potassium inwardly rectifying channel subfamily J member 8 [Source:HGNC Symbol;Acc:HGNC:6269] | 9894 | 0.000 | 0.3693 | No |
| 15 | POSTN | periostin [Source:HGNC Symbol;Acc:HGNC:16953] | 10317 | 0.000 | 0.3579 | No |
| 16 | PRG2 | proteoglycan 2, pro eosinophil major basic protein [Source:HGNC Symbol;Acc:HGNC:9362] | 11620 | 0.000 | 0.3227 | No |
| 17 | MSX1 | msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391] | 12549 | 0.000 | 0.2977 | No |
| 18 | THBD | thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784] | 12737 | 0.000 | 0.2926 | No |
| 19 | VTN | vitronectin [Source:HGNC Symbol;Acc:HGNC:12724] | 13337 | 0.000 | 0.2765 | No |
| 20 | OLR1 | oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133] | 16756 | 0.000 | 0.1842 | No |
| 21 | SERPINA5 | serpin family A member 5 [Source:HGNC Symbol;Acc:HGNC:8723] | 17832 | 0.000 | 0.1552 | No |
| 22 | LUM | lumican [Source:HGNC Symbol;Acc:HGNC:6724] | 18831 | 0.000 | 0.1283 | No |
| 23 | CXCL6 | C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643] | 19524 | 0.000 | 0.1096 | No |
| 24 | COL3A1 | collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201] | 19710 | 0.000 | 0.1046 | No |
| 25 | PF4 | platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861] | 20084 | 0.000 | 0.0946 | No |
| 26 | SLCO2A1 | solute carrier organic anion transporter family member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955] | 23973 | 0.000 | -0.0104 | No |
| 27 | COL5A2 | collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210] | 25107 | 0.000 | -0.0409 | No |
| 28 | PGLYRP1 | peptidoglycan recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:8904] | 25593 | 0.000 | -0.0540 | No |
| 29 | FSTL1 | follistatin like 1 [Source:HGNC Symbol;Acc:HGNC:3972] | 26301 | 0.000 | -0.0731 | No |
| 30 | LRPAP1 | LDL receptor related protein associated protein 1 [Source:HGNC Symbol;Acc:HGNC:6701] | 28434 | -0.020 | -0.1300 | No |
| 31 | VAV2 | vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658] | 28877 | -0.142 | -0.1375 | No |
| 32 | STC1 | stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373] | 30519 | -0.453 | -0.1676 | No |
| 33 | S100A4 | S100 calcium binding protein A4 [Source:HGNC Symbol;Acc:HGNC:10494] | 31114 | -0.618 | -0.1643 | No |
| 34 | NRP1 | neuropilin 1 [Source:HGNC Symbol;Acc:HGNC:8004] | 35408 | -2.385 | -0.2057 | No |
| 35 | JAG1 | jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188] | 36261 | -3.182 | -0.1292 | No |
| 36 | JAG2 | jagged canonical Notch ligand 2 [Source:HGNC Symbol;Acc:HGNC:6189] | 37061 | -4.850 | 0.0008 | No |
