Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.38147417
Normalized Enrichment Score (NES)1.0087323
Nominal p-value0.34415585
FDR q-value0.44700834
FWER p-Value0.965
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]154.9570.0231Yes
2IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]184.9410.0465Yes
3ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]804.5890.0666Yes
4TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]834.5780.0883Yes
5GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]864.5550.1099Yes
6TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]1444.2210.1284Yes
7BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]1913.9770.1460Yes
8GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]2963.5000.1598Yes
9SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]3553.3100.1739Yes
10SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]3623.2990.1894Yes
11CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]4073.1970.2034Yes
12GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]4763.0820.2162Yes
13IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]4903.0440.2303Yes
14CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]5502.9060.2425Yes
15CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]6262.7800.2536Yes
16SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]6352.7630.2665Yes
17CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]7212.5960.2765Yes
18IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]7442.5550.2881Yes
19ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]7762.5080.2991Yes
20CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]8532.3620.3083Yes
21PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]9702.2470.3158Yes
22BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]12051.9490.3187Yes
23TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]12351.9130.3270Yes
24MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]12581.8930.3354Yes
25SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]13451.8240.3417Yes
26FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]14781.7000.3462Yes
27TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]15151.6720.3532Yes
28ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]15241.6690.3609Yes
29CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]17091.5300.3632Yes
30HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]17631.4970.3688Yes
31TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]22801.2860.3610Yes
32PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]23791.2260.3641Yes
33CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]28001.0230.3576Yes
34ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]29050.9750.3594Yes
35IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]29100.9740.3639Yes
36DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]30120.9380.3657Yes
37PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]30490.9220.3691Yes
38TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]32230.8590.3685Yes
39CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]33470.8200.3690Yes
40DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]33820.8090.3719Yes
41GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]34600.7800.3736Yes
42SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]36190.7200.3727Yes
43CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]36600.7020.3749Yes
44CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]38060.6730.3742Yes
45EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]38550.6580.3760Yes
46HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]38780.6490.3785Yes
47JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]38830.6470.3815Yes
48DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]40890.5800.3787No
49IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]41440.5640.3799No
50RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]48150.3900.3636No
51BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]48590.3810.3642No
52BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]50090.3360.3618No
53BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]50280.3330.3629No
54DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]51080.3070.3622No
55PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]51500.2960.3625No
56ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]52300.2800.3617No
57SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]53130.2620.3607No
58GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]54370.2340.3585No
59BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]54600.2260.3590No
60DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]56050.1890.3560No
61ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]57860.1420.3518No
62APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]58120.1370.3518No
63MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]59950.0980.3473No
64BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]74360.0000.3083No
65CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]76410.0000.3028No
66PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]77320.0000.3003No
67GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]84980.0000.2796No
68FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]92860.0000.2583No
69GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]95300.0000.2517No
70NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]97360.0000.2462No
71PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]99760.0000.2397No
72HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]108830.0000.2152No
73LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]113990.0000.2012No
74PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]115890.0000.1961No
75EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]115990.0000.1959No
76IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]118930.0000.1879No
77ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]121220.0000.1818No
78TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]124800.0000.1721No
79CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]126660.0000.1671No
80IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]138620.0000.1347No
81BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]155420.0000.0893No
82BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]155510.0000.0890No
83CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]157450.0000.0838No
84DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]160270.0000.0762No
85F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]161560.0000.0727No
86F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]164980.0000.0635No
87AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]166430.0000.0596No
88TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]171580.0000.0457No
89DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]181700.0000.0183No
90LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]188310.0000.0004No
91AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]200270.000-0.0319No
92IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]218880.000-0.0823No
93CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]241660.000-0.1439No
94FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]250090.000-0.1667No
95IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]252570.000-0.1734No
96SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]265110.000-0.2074No
97KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]269690.000-0.2197No
98CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]280490.000-0.2489No
99CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]281310.000-0.2511No
100TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]283480.000-0.2570No
101MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]28428-0.018-0.2590No
102VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]28605-0.064-0.2635No
103BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]28871-0.141-0.2700No
104BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]29036-0.186-0.2736No
105BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29097-0.202-0.2742No
106RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]29262-0.234-0.2776No
107PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]29392-0.269-0.2798No
108NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]29417-0.275-0.2791No
109HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]30110-0.349-0.2962No
110RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]30189-0.370-0.2966No
111XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]30320-0.398-0.2982No
112ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]30586-0.472-0.3031No
113LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]30751-0.514-0.3051No
114PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]30908-0.559-0.3067No
115CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]30909-0.560-0.3040No
116SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]31017-0.594-0.3041No
117PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]31250-0.652-0.3073No
118PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]31265-0.657-0.3046No
119RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]31488-0.730-0.3071No
120IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]31994-0.872-0.3167No
121CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]32469-1.023-0.3246No
122SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]32555-1.035-0.3220No
123PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]32723-1.102-0.3213No
124ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]32741-1.110-0.3165No
125RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]33132-1.256-0.3211No
126FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]33615-1.440-0.3273No
127DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]33629-1.445-0.3208No
128PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]33765-1.503-0.3173No
129CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]33805-1.524-0.3112No
130CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]33854-1.545-0.3051No
131DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]33950-1.590-0.3002No
132CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]33998-1.620-0.2937No
133RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]34151-1.695-0.2898No
134DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]34163-1.701-0.2820No
135ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]34543-1.917-0.2832No
136CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]34747-1.948-0.2795No
137LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]34774-1.959-0.2709No
138CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]34838-2.004-0.2631No
139CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]34935-2.059-0.2559No
140BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]34997-2.100-0.2476No
141TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35009-2.109-0.2379No
142PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35077-2.152-0.2295No
143GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]35321-2.318-0.2250No
144GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]35412-2.388-0.2161No
145TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35491-2.438-0.2067No
146EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]35533-2.472-0.1961No
147TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]35719-2.623-0.1886No
148CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]35900-2.734-0.1805No
149GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]35912-2.745-0.1678No
150MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]35950-2.796-0.1555No
151EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]35969-2.824-0.1426No
152CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]36178-3.070-0.1337No
153CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36189-3.084-0.1193No
154BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36385-3.321-0.1088No
155WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36392-3.338-0.0932No
156H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36559-3.562-0.0807No
157BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]36582-3.613-0.0642No
158BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36600-3.647-0.0473No
159GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]36611-3.665-0.0302No
160BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36994-4.534-0.0190No
161PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]37000-4.5550.0024No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS