Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetHALLMARK_BILE_ACID_METABOLISM
Enrichment Score (ES)-0.57910955
Normalized Enrichment Score (NES)-1.2577547
Nominal p-value0.06998814
FDR q-value0.3168053
FWER p-Value0.902
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_BILE_ACID_METABOLISM   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ABCA1ATP binding cassette subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:29]1314.3070.0281No
2TFCP2L1transcription factor CP2 like 1 [Source:HGNC Symbol;Acc:HGNC:17925]2323.8000.0534No
3AQP9aquaporin 9 [Source:HGNC Symbol;Acc:HGNC:643]3023.4730.0771No
4ATXN1ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]3283.4030.1014No
5HAO1hydroxyacid oxidase 1 [Source:HGNC Symbol;Acc:HGNC:4809]4233.1610.1222No
6BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]7092.6180.1337No
7GCLMglutamate-cysteine ligase modifier subunit [Source:HGNC Symbol;Acc:HGNC:4312]10142.1840.1416No
8LCKLCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:6524]10242.1690.1573No
9PRDX5peroxiredoxin 5 [Source:HGNC Symbol;Acc:HGNC:9355]17061.5320.1501No
10ACSL1acyl-CoA synthetase long chain family member 1 [Source:HGNC Symbol;Acc:HGNC:3569]17301.5180.1607No
11PEX12peroxisomal biogenesis factor 12 [Source:HGNC Symbol;Acc:HGNC:8854]23181.2630.1541No
12CH25Hcholesterol 25-hydroxylase [Source:HGNC Symbol;Acc:HGNC:1907]26831.0740.1522No
13PEX11Aperoxisomal biogenesis factor 11 alpha [Source:HGNC Symbol;Acc:HGNC:8852]32800.8420.1422No
14ALDH8A1aldehyde dehydrogenase 8 family member A1 [Source:HGNC Symbol;Acc:HGNC:15471]46370.4320.1087No
15PEX19peroxisomal biogenesis factor 19 [Source:HGNC Symbol;Acc:HGNC:9713]46390.4310.1119No
16LIPElipase E, hormone sensitive type [Source:HGNC Symbol;Acc:HGNC:6621]49380.3580.1065No
17IDI1isopentenyl-diphosphate delta isomerase 1 [Source:HGNC Symbol;Acc:HGNC:5387]51210.3070.1038No
18SOAT2sterol O-acyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:11178]51670.2920.1047No
19PIPOXpipecolic acid and sarcosine oxidase [Source:HGNC Symbol;Acc:HGNC:17804]51870.2880.1063No
20PEX13peroxisomal biogenesis factor 13 [Source:HGNC Symbol;Acc:HGNC:8855]56180.1860.0961No
21ARandrogen receptor [Source:HGNC Symbol;Acc:HGNC:644]61030.0660.0835No
22RXRAretinoid X receptor alpha [Source:HGNC Symbol;Acc:HGNC:10477]63070.0140.0781No
23EPHX2epoxide hydrolase 2 [Source:HGNC Symbol;Acc:HGNC:3402]80260.0000.0316No
24GSTK1glutathione S-transferase kappa 1 [Source:HGNC Symbol;Acc:HGNC:16906]97020.000-0.0137No
25SLC23A1solute carrier family 23 member 1 [Source:HGNC Symbol;Acc:HGNC:10974]99030.000-0.0191No
26APOA1apolipoprotein A1 [Source:HGNC Symbol;Acc:HGNC:600]101970.000-0.0270No
27NEDD4NEDD4 E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:7727]105440.000-0.0364No
28SLC27A2solute carrier family 27 member 2 [Source:HGNC Symbol;Acc:HGNC:10996]109970.000-0.0486No
29AKR1D1aldo-keto reductase family 1 member D1 [Source:HGNC Symbol;Acc:HGNC:388]116430.000-0.0660No
30AGXTalanine--glyoxylate and serine--pyruvate aminotransferase [Source:HGNC Symbol;Acc:HGNC:341]122800.000-0.0832No
31CYP39A1cytochrome P450 family 39 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:17449]124880.000-0.0888No
32HSD3B1hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 [Source:HGNC Symbol;Acc:HGNC:5217]126270.000-0.0925No
33TTRtransthyretin [Source:HGNC Symbol;Acc:HGNC:12405]127500.000-0.0958No
34RBP1retinol binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9919]129110.000-0.1002No
35DIO1iodothyronine deiodinase 1 [Source:HGNC Symbol;Acc:HGNC:2883]158220.000-0.1789No
36DIO2iodothyronine deiodinase 2 [Source:HGNC Symbol;Acc:HGNC:2884]158230.000-0.1789No
37GCGC vitamin D binding protein [Source:HGNC Symbol;Acc:HGNC:4187]161790.000-0.1885No
38SERPINA6serpin family A member 6 [Source:HGNC Symbol;Acc:HGNC:1540]178290.000-0.2331No
39OPTNoptineurin [Source:HGNC Symbol;Acc:HGNC:17142]180860.000-0.2400No
40BMP6bone morphogenetic protein 6 [Source:HGNC Symbol;Acc:HGNC:1073]191440.000-0.2686No
41HSD17B6hydroxysteroid 17-beta dehydrogenase 6 [Source:HGNC Symbol;Acc:HGNC:23316]198570.000-0.2878No
42NR1H4nuclear receptor subfamily 1 group H member 4 [Source:HGNC Symbol;Acc:HGNC:7967]200690.000-0.2935No
43SULT2B1sulfotransferase family 2B member 1 [Source:HGNC Symbol;Acc:HGNC:11459]208660.000-0.3151No
44SULT1B1sulfotransferase family 1B member 1 [Source:HGNC Symbol;Acc:HGNC:17845]211830.000-0.3236No
45ALDH1A1aldehyde dehydrogenase 1 family member A1 [Source:HGNC Symbol;Acc:HGNC:402]230030.000-0.3728No
46CYP46A1cytochrome P450 family 46 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2641]232490.000-0.3794No
47SLC22A18solute carrier family 22 member 18 [Source:HGNC Symbol;Acc:HGNC:10964]241090.000-0.4026No
48ABCA6ATP binding cassette subfamily A member 6 [Source:HGNC Symbol;Acc:HGNC:36]242100.000-0.4053No
49ABCA4ATP binding cassette subfamily A member 4 [Source:HGNC Symbol;Acc:HGNC:34]242130.000-0.4054No
50ABCA9ATP binding cassette subfamily A member 9 [Source:HGNC Symbol;Acc:HGNC:39]242140.000-0.4054No
51SLCO1A2solute carrier organic anion transporter family member 1A2 [Source:HGNC Symbol;Acc:HGNC:10956]242640.000-0.4067No
52BBOX1gamma-butyrobetaine hydroxylase 1 [Source:HGNC Symbol;Acc:HGNC:964]256800.000-0.4450No
53CYP8B1cytochrome P450 family 8 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2653]257340.000-0.4464No
54CYP7B1cytochrome P450 family 7 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2652]260620.000-0.4553No
55CYP7A1cytochrome P450 family 7 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2651]260850.000-0.4559No
56ABCG8ATP binding cassette subfamily G member 8 [Source:HGNC Symbol;Acc:HGNC:13887]283090.000-0.5160No
57PEX6peroxisomal biogenesis factor 6 [Source:HGNC Symbol;Acc:HGNC:8859]28523-0.043-0.5214No
58ABCA8ATP binding cassette subfamily A member 8 [Source:HGNC Symbol;Acc:HGNC:38]28915-0.152-0.5309No
59ACSL5acyl-CoA synthetase long chain family member 5 [Source:HGNC Symbol;Acc:HGNC:16526]29455-0.288-0.5433No
60AMACRalpha-methylacyl-CoA racemase [Source:HGNC Symbol;Acc:HGNC:451]30178-0.367-0.5602No
61HSD17B11hydroxysteroid 17-beta dehydrogenase 11 [Source:HGNC Symbol;Acc:HGNC:22960]30616-0.479-0.5685No
62ISOC1isochorismatase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24254]30700-0.501-0.5670No
63SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]31017-0.594-0.5712No
64NR1I2nuclear receptor subfamily 1 group I member 2 [Source:HGNC Symbol;Acc:HGNC:7968]31311-0.672-0.5742Yes
65NR0B2nuclear receptor subfamily 0 group B member 2 [Source:HGNC Symbol;Acc:HGNC:7961]31374-0.696-0.5707Yes
66PNPLA8patatin like phospholipase domain containing 8 [Source:HGNC Symbol;Acc:HGNC:28900]31507-0.734-0.5689Yes
67PHYHphytanoyl-CoA 2-hydroxylase [Source:HGNC Symbol;Acc:HGNC:8940]31656-0.776-0.5672Yes
68GNPATglyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:HGNC:4416]31910-0.851-0.5678Yes
69SLC23A2solute carrier family 23 member 2 [Source:HGNC Symbol;Acc:HGNC:10973]31929-0.858-0.5619Yes
70EFHC1EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16406]32027-0.883-0.5581Yes
71KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]32101-0.907-0.5534Yes
72MLYCDmalonyl-CoA decarboxylase [Source:HGNC Symbol;Acc:HGNC:7150]32187-0.934-0.5488Yes
73HSD17B4hydroxysteroid 17-beta dehydrogenase 4 [Source:HGNC Symbol;Acc:HGNC:5213]32403-1.002-0.5472Yes
74PEX11Gperoxisomal biogenesis factor 11 gamma [Source:HGNC Symbol;Acc:HGNC:20208]32456-1.019-0.5411Yes
75PEX7peroxisomal biogenesis factor 7 [Source:HGNC Symbol;Acc:HGNC:8860]32767-1.118-0.5413Yes
76CATcatalase [Source:HGNC Symbol;Acc:HGNC:1516]32898-1.165-0.5362Yes
77LONP2lon peptidase 2, peroxisomal [Source:HGNC Symbol;Acc:HGNC:20598]32973-1.193-0.5295Yes
78ABCD3ATP binding cassette subfamily D member 3 [Source:HGNC Symbol;Acc:HGNC:67]33330-1.305-0.5295Yes
79GNMTglycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]33340-1.309-0.5201Yes
80PEX16peroxisomal biogenesis factor 16 [Source:HGNC Symbol;Acc:HGNC:8857]33480-1.377-0.5137Yes
81FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]33615-1.440-0.5068Yes
82PECRperoxisomal trans-2-enoyl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:18281]33625-1.444-0.4964Yes
83SLC27A5solute carrier family 27 member 5 [Source:HGNC Symbol;Acc:HGNC:10999]33764-1.503-0.4891Yes
84SCP2sterol carrier protein 2 [Source:HGNC Symbol;Acc:HGNC:10606]33990-1.614-0.4833Yes
85RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]34151-1.695-0.4751Yes
86RXRGretinoid X receptor gamma [Source:HGNC Symbol;Acc:HGNC:10479]34247-1.740-0.4649Yes
87IDH2isocitrate dehydrogenase (NADP(+)) 2 [Source:HGNC Symbol;Acc:HGNC:5383]34291-1.761-0.4531Yes
88ABCG4ATP binding cassette subfamily G member 4 [Source:HGNC Symbol;Acc:HGNC:13884]34440-1.850-0.4435Yes
89ABCA5ATP binding cassette subfamily A member 5 [Source:HGNC Symbol;Acc:HGNC:35]34515-1.896-0.4315Yes
90ALDH9A1aldehyde dehydrogenase 9 family member A1 [Source:HGNC Symbol;Acc:HGNC:412]34541-1.916-0.4181Yes
91PEX26peroxisomal biogenesis factor 26 [Source:HGNC Symbol;Acc:HGNC:22965]34596-1.945-0.4053Yes
92NPC1NPC intracellular cholesterol transporter 1 [Source:HGNC Symbol;Acc:HGNC:7897]34815-1.989-0.3965Yes
93ABCA2ATP binding cassette subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:32]34911-2.047-0.3840Yes
94FADS1fatty acid desaturase 1 [Source:HGNC Symbol;Acc:HGNC:3574]34930-2.058-0.3694Yes
95NUDT12nudix hydrolase 12 [Source:HGNC Symbol;Acc:HGNC:18826]34978-2.090-0.3553Yes
96PEX1peroxisomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8850]35042-2.131-0.3413Yes
97ABCA3ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]35049-2.135-0.3258Yes
98FADS2fatty acid desaturase 2 [Source:HGNC Symbol;Acc:HGNC:3575]35254-2.276-0.3145Yes
99SLC35B2solute carrier family 35 member B2 [Source:HGNC Symbol;Acc:HGNC:16872]35460-2.410-0.3024Yes
100DHCR2424-dehydrocholesterol reductase [Source:HGNC Symbol;Acc:HGNC:2859]35557-2.490-0.2866Yes
101ABCD1ATP binding cassette subfamily D member 1 [Source:HGNC Symbol;Acc:HGNC:61]35761-2.661-0.2725Yes
102SLC29A1solute carrier family 29 member 1 (Augustine blood group) [Source:HGNC Symbol;Acc:HGNC:11003]36045-2.930-0.2586Yes
103PXMP2peroxisomal membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:9716]36115-2.992-0.2385Yes
104PAOXpolyamine oxidase [Source:HGNC Symbol;Acc:HGNC:20837]36418-3.367-0.2219Yes
105CYP27A1cytochrome P450 family 27 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2605]36580-3.609-0.1997Yes
106CROTcarnitine O-octanoyltransferase [Source:HGNC Symbol;Acc:HGNC:2366]36592-3.627-0.1733Yes
107HACL12-hydroxyacyl-CoA lyase 1 [Source:HGNC Symbol;Acc:HGNC:17856]36761-3.924-0.1490Yes
108IDH1isocitrate dehydrogenase (NADP(+)) 1 [Source:HGNC Symbol;Acc:HGNC:5382]36786-3.986-0.1203Yes
109PFKMphosphofructokinase, muscle [Source:HGNC Symbol;Acc:HGNC:8877]36870-4.156-0.0920Yes
110HSD3B7hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 [Source:HGNC Symbol;Acc:HGNC:18324]36883-4.190-0.0615Yes
111NR3C2nuclear receptor subfamily 3 group C member 2 [Source:HGNC Symbol;Acc:HGNC:7979]36944-4.357-0.0310Yes
112ABCD2ATP binding cassette subfamily D member 2 [Source:HGNC Symbol;Acc:HGNC:66]37040-4.7530.0014Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_BILE_ACID_METABOLISM   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_BILE_ACID_METABOLISM: Random ES distribution   
Gene set null distribution of ES for HALLMARK_BILE_ACID_METABOLISM