Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetHALLMARK_DNA_REPAIR
Enrichment Score (ES)-0.45919314
Normalized Enrichment Score (NES)-1.0171641
Nominal p-value0.42540792
FDR q-value0.6246873
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_DNA_REPAIR   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]2223.8390.0176No
2PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]4173.1680.0318No
3ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3433]4653.1170.0496No
4PDE4Bphosphodiesterase 4B [Source:HGNC Symbol;Acc:HGNC:8781]4803.0640.0681No
5GTF2H5general transcription factor IIH subunit 5 [Source:HGNC Symbol;Acc:HGNC:21157]7072.6230.0781No
6APRTadenine phosphoribosyltransferase [Source:HGNC Symbol;Acc:HGNC:626]8502.3710.0888No
7NME1NME/NM23 nucleoside diphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:7849]8992.2770.1015No
8POLE4DNA polymerase epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:18755]10232.1700.1115No
9HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]12101.9390.1183No
10COX17cytochrome c oxidase copper chaperone COX17 [Source:HGNC Symbol;Acc:HGNC:2264]14551.7230.1223No
11ADRM1adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:HGNC:15759]14661.7090.1326No
12GMPR2guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:HGNC:4377]16131.5960.1384No
13DAD1defender against cell death 1 [Source:HGNC Symbol;Acc:HGNC:2664]16511.5720.1470No
14SNAPC4small nuclear RNA activating complex polypeptide 4 [Source:HGNC Symbol;Acc:HGNC:11137]19131.4180.1487No
15POLR2CRNA polymerase II subunit C [Source:HGNC Symbol;Acc:HGNC:9189]22451.3120.1478No
16GTF2H1general transcription factor IIH subunit 1 [Source:HGNC Symbol;Acc:HGNC:4655]22691.2960.1551No
17VPS37BVPS37B subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:25754]24611.1890.1573No
18ITPAinosine triphosphatase [Source:HGNC Symbol;Acc:HGNC:6176]24761.1820.1641No
19ELOAelongin A [Source:HGNC Symbol;Acc:HGNC:11620]25181.1570.1701No
20BRF2BRF2 RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:17298]26521.0870.1732No
21SRSF6serine and arginine rich splicing factor 6 [Source:HGNC Symbol;Acc:HGNC:10788]27421.0500.1773No
22POLR2KRNA polymerase II subunit K [Source:HGNC Symbol;Acc:HGNC:9198]27451.0480.1836No
23SEC61A1SEC61 translocon subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:18276]30150.9370.1821No
24GTF2F1general transcription factor IIF subunit 1 [Source:HGNC Symbol;Acc:HGNC:4652]31310.8920.1845No
25NT5C3A5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:HGNC:17820]31450.8880.1896No
26RRM2Bribonucleotide reductase regulatory TP53 inducible subunit M2B [Source:HGNC Symbol;Acc:HGNC:17296]33800.8090.1882No
27POLR2GRNA polymerase II subunit G [Source:HGNC Symbol;Acc:HGNC:9194]36880.6920.1842No
28ERCC8ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:HGNC Symbol;Acc:HGNC:3439]38050.6730.1851No
29GTF2Bgeneral transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]41480.5630.1793No
30TARBP2TARBP2 subunit of RISC loading complex [Source:HGNC Symbol;Acc:HGNC:11569]43330.5130.1775No
31CLP1cleavage factor polyribonucleotide kinase subunit 1 [Source:HGNC Symbol;Acc:HGNC:16999]43460.5110.1803No
32TAF13TATA-box binding protein associated factor 13 [Source:HGNC Symbol;Acc:HGNC:11546]45080.4680.1788No
33ERCC3ERCC excision repair 3, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3435]46110.4380.1788No
34ELLelongation factor for RNA polymerase II [Source:HGNC Symbol;Acc:HGNC:23114]46540.4280.1803No
35DDB1damage specific DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2717]47050.4140.1815No
36SAC3D1SAC3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30179]47540.4000.1826No
37GTF2H3general transcription factor IIH subunit 3 [Source:HGNC Symbol;Acc:HGNC:4657]48240.3870.1831No
38NELFBnegative elongation factor complex member B [Source:HGNC Symbol;Acc:HGNC:24324]48840.3710.1838No
39TAF12TATA-box binding protein associated factor 12 [Source:HGNC Symbol;Acc:HGNC:11545]48880.3700.1860No
40SMAD5SMAD family member 5 [Source:HGNC Symbol;Acc:HGNC:6771]49300.3590.1871No
41ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]49510.3540.1887No
42PDE6Gphosphodiesterase 6G [Source:HGNC Symbol;Acc:HGNC:8789]52400.2790.1826No
43POLR2FRNA polymerase II subunit F [Source:HGNC Symbol;Acc:HGNC:9193]52650.2740.1837No
44EDF1endothelial differentiation related factor 1 [Source:HGNC Symbol;Acc:HGNC:3164]53960.2380.1816No
45GUK1guanylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:4693]54030.2370.1829No
46POLD4DNA polymerase delta 4, accessory subunit [Source:HGNC Symbol;Acc:HGNC:14106]54630.2260.1827No
47TAF9TATA-box binding protein associated factor 9 [Source:HGNC Symbol;Acc:HGNC:11542]55130.2150.1827No
48SDCBPsyndecan binding protein [Source:HGNC Symbol;Acc:HGNC:10662]58150.1360.1754No
49POM121POM121 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:19702]58190.1350.1761No
50POLR1DRNA polymerase I and III subunit D [Source:HGNC Symbol;Acc:HGNC:20422]58810.1270.1753No
51POLR2ARNA polymerase II subunit A [Source:HGNC Symbol;Acc:HGNC:9187]59500.1120.1741No
52SUPT5HSPT5 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11469]59670.1070.1743No
53NCBP2nuclear cap binding protein subunit 2 [Source:HGNC Symbol;Acc:HGNC:7659]60290.0910.1732No
54SUPT4H1SPT4 homolog, DSIF elongation factor subunit [Source:HGNC Symbol;Acc:HGNC:11467]60350.0900.1736No
55TMED2transmembrane p24 trafficking protein 2 [Source:HGNC Symbol;Acc:HGNC:16996]60710.0770.1732No
56CSTF3cleavage stimulation factor subunit 3 [Source:HGNC Symbol;Acc:HGNC:2485]60910.0710.1731No
57CETN2centrin 2 [Source:HGNC Symbol;Acc:HGNC:1867]63460.0080.1663No
58BCAMbasal cell adhesion molecule (Lutheran blood group) [Source:HGNC Symbol;Acc:HGNC:6722]157650.000-0.0887No
59BOLA2bolA family member 2 [Source:HGNC Symbol;Acc:HGNC:29488]179200.000-0.1470No
60NPR2natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]208010.000-0.2249No
61ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]235090.000-0.2982No
62AK1adenylate kinase 1 [Source:HGNC Symbol;Acc:HGNC:361]246240.000-0.3284No
63CCNOcyclin O [Source:HGNC Symbol;Acc:HGNC:18576]280040.000-0.4198No
64TP53tumor protein p53 [Source:HGNC Symbol;Acc:HGNC:11998]28514-0.040-0.4334No
65ERCC4ERCC excision repair 4, endonuclease catalytic subunit [Source:HGNC Symbol;Acc:HGNC:3436]28638-0.075-0.4362No
66RBX1ring-box 1 [Source:HGNC Symbol;Acc:HGNC:9928]28754-0.111-0.4387No
67POLR2DRNA polymerase II subunit D [Source:HGNC Symbol;Acc:HGNC:9191]28791-0.120-0.4389No
68NUDT9nudix hydrolase 9 [Source:HGNC Symbol;Acc:HGNC:8056]28859-0.138-0.4399No
69CANT1calcium activated nucleotidase 1 [Source:HGNC Symbol;Acc:HGNC:19721]28867-0.140-0.4392No
70POLBDNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]28999-0.174-0.4417No
71BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29097-0.202-0.4431No
72NFX1nuclear transcription factor, X-box binding 1 [Source:HGNC Symbol;Acc:HGNC:7803]29109-0.203-0.4421No
73TAF10TATA-box binding protein associated factor 10 [Source:HGNC Symbol;Acc:HGNC:11543]29341-0.254-0.4468No
74IMPDH2inosine monophosphate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:6053]29512-0.302-0.4496No
75TSG101tumor susceptibility 101 [Source:HGNC Symbol;Acc:HGNC:15971]29578-0.316-0.4494No
76ZNF707zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]29704-0.320-0.4508No
77RAE1ribonucleic acid export 1 [Source:HGNC Symbol;Acc:HGNC:9828]30008-0.325-0.4570Yes
78FEN1flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]30083-0.340-0.4569Yes
79DGCR8DGCR8 microprocessor complex subunit [Source:HGNC Symbol;Acc:HGNC:2847]30091-0.344-0.4550Yes
80RNMTRNA guanine-7 methyltransferase [Source:HGNC Symbol;Acc:HGNC:10075]30221-0.375-0.4562Yes
81SSRP1structure specific recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:11327]30279-0.388-0.4553Yes
82TAF6TATA-box binding protein associated factor 6 [Source:HGNC Symbol;Acc:HGNC:11540]30329-0.400-0.4542Yes
83POLR2IRNA polymerase II subunit I [Source:HGNC Symbol;Acc:HGNC:9196]30475-0.440-0.4554Yes
84TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]30615-0.478-0.4563Yes
85ALYREFAly/REF export factor [Source:HGNC Symbol;Acc:HGNC:19071]30622-0.480-0.4535Yes
86RAD52RAD52 homolog, DNA repair protein [Source:HGNC Symbol;Acc:HGNC:9824]30691-0.498-0.4523Yes
87POLR2HRNA polymerase II subunit H [Source:HGNC Symbol;Acc:HGNC:9195]30705-0.503-0.4495Yes
88VPS28VPS28 subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18178]30807-0.528-0.4490Yes
89MPC2mitochondrial pyruvate carrier 2 [Source:HGNC Symbol;Acc:HGNC:24515]30842-0.541-0.4466Yes
90TK2thymidine kinase 2 [Source:HGNC Symbol;Acc:HGNC:11831]30938-0.569-0.4457Yes
91RALARAS like proto-oncogene A [Source:HGNC Symbol;Acc:HGNC:9839]31121-0.620-0.4468Yes
92EIF1Beukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]31205-0.643-0.4451Yes
93POLR2ERNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]31266-0.657-0.4427Yes
94HPRT1hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:5157]31302-0.671-0.4395Yes
95GTF2A2general transcription factor IIA subunit 2 [Source:HGNC Symbol;Acc:HGNC:4647]31347-0.685-0.4365Yes
96POLR3CRNA polymerase III subunit C [Source:HGNC Symbol;Acc:HGNC:30076]31508-0.735-0.4363Yes
97POLLDNA polymerase lambda [Source:HGNC Symbol;Acc:HGNC:9184]31641-0.771-0.4352Yes
98GTF3C5general transcription factor IIIC subunit 5 [Source:HGNC Symbol;Acc:HGNC:4668]31679-0.784-0.4313Yes
99MRPL40mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]31724-0.799-0.4276Yes
100MPGN-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]32042-0.888-0.4308Yes
101VPS37DVPS37D subunit of ESCRT-I [Source:HGNC Symbol;Acc:HGNC:18287]32047-0.890-0.4254Yes
102ERCC5ERCC excision repair 5, endonuclease [Source:HGNC Symbol;Acc:HGNC:3437]32051-0.891-0.4200Yes
103STX3syntaxin 3 [Source:HGNC Symbol;Acc:HGNC:11438]32062-0.895-0.4148Yes
104NELFEnegative elongation factor complex member E [Source:HGNC Symbol;Acc:HGNC:13974]32134-0.918-0.4111Yes
105ARL6IP1ADP ribosylation factor like GTPase 6 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:697]32155-0.923-0.4059Yes
106XPCXPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]32176-0.931-0.4008Yes
107NT5C5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:HGNC:17144]32179-0.932-0.3951Yes
108DGUOKdeoxyguanosine kinase [Source:HGNC Symbol;Acc:HGNC:2858]32213-0.941-0.3902Yes
109SF3A3splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]32395-1.000-0.3890Yes
110USP11ubiquitin specific peptidase 11 [Source:HGNC Symbol;Acc:HGNC:12609]32452-1.018-0.3842Yes
111AAASaladin WD repeat nucleoporin [Source:HGNC Symbol;Acc:HGNC:13666]32526-1.025-0.3799Yes
112NUDT21nudix hydrolase 21 [Source:HGNC Symbol;Acc:HGNC:13870]32591-1.046-0.3752Yes
113UMPSuridine monophosphate synthetase [Source:HGNC Symbol;Acc:HGNC:12563]32657-1.074-0.3704Yes
114UPF3BUPF3B regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]32679-1.081-0.3643Yes
115PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]32872-1.155-0.3624Yes
116POLR1CRNA polymerase I and III subunit C [Source:HGNC Symbol;Acc:HGNC:20194]33145-1.261-0.3620Yes
117RAD51RAD51 recombinase [Source:HGNC Symbol;Acc:HGNC:9817]33193-1.285-0.3554Yes
118POLHDNA polymerase eta [Source:HGNC Symbol;Acc:HGNC:9181]33516-1.397-0.3556Yes
119POLD3DNA polymerase delta 3, accessory subunit [Source:HGNC Symbol;Acc:HGNC:20932]33585-1.427-0.3486Yes
120POLA2DNA polymerase alpha 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:30073]33602-1.435-0.3403Yes
121NELFCDnegative elongation factor complex member C/D [Source:HGNC Symbol;Acc:HGNC:15934]33603-1.435-0.3314Yes
122GSDMEgasdermin E [Source:HGNC Symbol;Acc:HGNC:2810]33714-1.476-0.3253Yes
123SURF1SURF1 cytochrome c oxidase assembly factor [Source:HGNC Symbol;Acc:HGNC:11474]33715-1.476-0.3163Yes
124RFC5replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]33951-1.590-0.3129Yes
125RPA2replication protein A2 [Source:HGNC Symbol;Acc:HGNC:10290]33986-1.613-0.3039Yes
126RPA3replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]34095-1.662-0.2966Yes
127DCTN4dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]34211-1.721-0.2892Yes
128RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]34281-1.756-0.2802Yes
129NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]34318-1.778-0.2703Yes
130PRIM1DNA primase subunit 1 [Source:HGNC Symbol;Acc:HGNC:9369]35024-2.115-0.2764Yes
131RFC4replication factor C subunit 4 [Source:HGNC Symbol;Acc:HGNC:9972]35074-2.151-0.2645Yes
132POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]35155-2.211-0.2531Yes
133SNAPC5small nuclear RNA activating complex polypeptide 5 [Source:HGNC Symbol;Acc:HGNC:15484]35184-2.234-0.2401Yes
134GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]35412-2.388-0.2316Yes
135POLR2JRNA polymerase II subunit J [Source:HGNC Symbol;Acc:HGNC:9197]35438-2.397-0.2176Yes
136POLR3GLRNA polymerase III subunit G like [Source:HGNC Symbol;Acc:HGNC:28466]35503-2.448-0.2043Yes
137POLA1DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]35535-2.473-0.1899Yes
138DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]35634-2.552-0.1769Yes
139CDAcytidine deaminase [Source:HGNC Symbol;Acc:HGNC:1712]35638-2.560-0.1613Yes
140RFC2replication factor C subunit 2 [Source:HGNC Symbol;Acc:HGNC:9970]35707-2.615-0.1470Yes
141TAF1CTATA-box binding protein associated factor, RNA polymerase I subunit C [Source:HGNC Symbol;Acc:HGNC:11534]35947-2.791-0.1364Yes
142AGO4argonaute RISC component 4 [Source:HGNC Symbol;Acc:HGNC:18424]35978-2.837-0.1198Yes
143ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]36019-2.892-0.1031Yes
144LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]36175-3.068-0.0884Yes
145AK3adenylate kinase 3 [Source:HGNC Symbol;Acc:HGNC:17376]36226-3.122-0.0706Yes
146NME4NME/NM23 nucleoside diphosphate kinase 4 [Source:HGNC Symbol;Acc:HGNC:7852]36562-3.565-0.0578Yes
147REV3LREV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]36677-3.785-0.0376Yes
148ADCY6adenylate cyclase 6 [Source:HGNC Symbol;Acc:HGNC:237]36757-3.920-0.0157Yes
149DDB2damage specific DNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2718]36807-4.0180.0077Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_DNA_REPAIR   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_DNA_REPAIR: Random ES distribution   
Gene set null distribution of ES for HALLMARK_DNA_REPAIR