Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_INTERFERON_ALPHA_RESPONSE
Enrichment Score (ES)0.7704947
Normalized Enrichment Score (NES)1.9074632
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GBP4guanylate binding protein 4 [Source:HGNC Symbol;Acc:HGNC:20480]574.7360.0251Yes
2RSAD2radical S-adenosyl methionine domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30908]674.6440.0510Yes
3ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]804.5890.0765Yes
4MX1MX dynamin like GTPase 1 [Source:HGNC Symbol;Acc:HGNC:7532]1104.4000.1005Yes
5IRF7interferon regulatory factor 7 [Source:HGNC Symbol;Acc:HGNC:6122]1154.3700.1250Yes
6OASL2'-5'-oligoadenylate synthetase like [Source:HGNC Symbol;Acc:HGNC:8090]1184.3590.1495Yes
7USP18ubiquitin specific peptidase 18 [Source:HGNC Symbol;Acc:HGNC:12616]1294.3090.1735Yes
8HELZ2helicase with zinc finger 2 [Source:HGNC Symbol;Acc:HGNC:30021]1534.1790.1964Yes
9DHX58DExH-box helicase 58 [Source:HGNC Symbol;Acc:HGNC:29517]1544.1710.2199Yes
10IFIH1interferon induced with helicase C domain 1 [Source:HGNC Symbol;Acc:HGNC:18873]1993.9190.2408Yes
11IFIT2interferon induced protein with tetratricopeptide repeats 2 [Source:HGNC Symbol;Acc:HGNC:5409]2173.8600.2620Yes
12CMPK2cytidine/uridine monophosphate kinase 2 [Source:HGNC Symbol;Acc:HGNC:27015]2223.8390.2836Yes
13IFI44interferon induced protein 44 [Source:HGNC Symbol;Acc:HGNC:16938]2263.8270.3050Yes
14HERC6HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 [Source:HGNC Symbol;Acc:HGNC:26072]2623.6240.3245Yes
15TRAFD1TRAF-type zinc finger domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24808]2703.5830.3445Yes
16IFI35interferon induced protein 35 [Source:HGNC Symbol;Acc:HGNC:5399]2713.5770.3646Yes
17OAS12'-5'-oligoadenylate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:8086]3513.3220.3812Yes
18PARP12poly(ADP-ribose) polymerase family member 12 [Source:HGNC Symbol;Acc:HGNC:21919]4093.1910.3976Yes
19LGALS3BPgalectin 3 binding protein [Source:HGNC Symbol;Acc:HGNC:6564]4263.1580.4149Yes
20TRIM21tripartite motif containing 21 [Source:HGNC Symbol;Acc:HGNC:11312]4843.0550.4306Yes
21PROCRprotein C receptor [Source:HGNC Symbol;Acc:HGNC:9452]6292.7690.4423Yes
22SAMD9sterile alpha motif domain containing 9 [Source:HGNC Symbol;Acc:HGNC:1348]6622.7160.4567Yes
23STAT2signal transducer and activator of transcription 2 [Source:HGNC Symbol;Acc:HGNC:11363]6762.6970.4716Yes
24CXCL10C-X-C motif chemokine ligand 10 [Source:HGNC Symbol;Acc:HGNC:10637]7022.6350.4857Yes
25UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]7112.6160.5002Yes
26CSF1colony stimulating factor 1 [Source:HGNC Symbol;Acc:HGNC:2432]7132.6110.5149Yes
27CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]7212.5960.5293Yes
28EPSTI1epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]7422.5570.5432Yes
29IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]7442.5550.5575Yes
30TRIM14tripartite motif containing 14 [Source:HGNC Symbol;Acc:HGNC:16283]8292.4080.5688Yes
31TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]8422.3840.5819Yes
32SAMD9Lsterile alpha motif domain containing 9 like [Source:HGNC Symbol;Acc:HGNC:1349]8432.3820.5953Yes
33PARP14poly(ADP-ribose) polymerase family member 14 [Source:HGNC Symbol;Acc:HGNC:29232]8972.2790.6067Yes
34RIPK2receptor interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:10020]10292.1580.6153Yes
35ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]10492.1370.6269Yes
36PNPT1polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]11102.0680.6369Yes
37DDX60DExD/H-box helicase 60 [Source:HGNC Symbol;Acc:HGNC:25942]11681.9880.6465Yes
38OGFRopioid growth factor receptor [Source:HGNC Symbol;Acc:HGNC:15768]12241.9320.6559Yes
39IFITM2interferon induced transmembrane protein 2 [Source:HGNC Symbol;Acc:HGNC:5413]12591.8910.6656Yes
40IRF9interferon regulatory factor 9 [Source:HGNC Symbol;Acc:HGNC:6131]13631.8090.6730Yes
41TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]15151.6720.6784Yes
42MOV10Mov10 RISC complex RNA helicase [Source:HGNC Symbol;Acc:HGNC:7200]15221.6690.6876Yes
43PARP9poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]16471.5730.6931Yes
44UBE2L6ubiquitin conjugating enzyme E2 L6 [Source:HGNC Symbol;Acc:HGNC:12490]16641.5590.7015Yes
45CMTR1cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]17161.5250.7087Yes
46PSME2proteasome activator subunit 2 [Source:HGNC Symbol;Acc:HGNC:9569]17501.5080.7163Yes
47EIF2AK2eukaryotic translation initiation factor 2 alpha kinase 2 [Source:HGNC Symbol;Acc:HGNC:9437]17811.4870.7238Yes
48TDRD7tudor domain containing 7 [Source:HGNC Symbol;Acc:HGNC:30831]18381.4570.7305Yes
49GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]18831.4340.7374Yes
50TENT5Aterminal nucleotidyltransferase 5A [Source:HGNC Symbol;Acc:HGNC:18345]19181.4130.7444Yes
51IFITM1interferon induced transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:5412]20401.3760.7489Yes
52TRIM26tripartite motif containing 26 [Source:HGNC Symbol;Acc:HGNC:12962]21441.3750.7539Yes
53IFI44Linterferon induced protein 44 like [Source:HGNC Symbol;Acc:HGNC:17817]21571.3690.7613Yes
54PSMB8proteasome 20S subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:9545]24621.1880.7597Yes
55ISG15ISG15 ubiquitin like modifier [Source:HGNC Symbol;Acc:HGNC:4053]25201.1540.7647Yes
56PLSCR1phospholipid scramblase 1 [Source:HGNC Symbol;Acc:HGNC:9092]26841.0730.7663Yes
57WARS1tryptophanyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:12729]28660.9910.7670Yes
58SP110SP110 nuclear body protein [Source:HGNC Symbol;Acc:HGNC:5401]30810.9110.7663Yes
59PSMA3proteasome 20S subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:9532]32340.8560.7671Yes
60TRIM5tripartite motif containing 5 [Source:HGNC Symbol;Acc:HGNC:16276]32830.8420.7705Yes
61LAP3leucine aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:18449]35690.7420.7670No
62CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]38060.6730.7644No
63CD47CD47 molecule [Source:HGNC Symbol;Acc:HGNC:1682]39980.6080.7626No
64HLA-Cmajor histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]40520.5900.7645No
65PSME1proteasome activator subunit 1 [Source:HGNC Symbol;Acc:HGNC:9568]41650.5570.7646No
66IFIT3interferon induced protein with tetratricopeptide repeats 3 [Source:HGNC Symbol;Acc:HGNC:5411]52130.2830.7379No
67PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]56850.1700.7262No
68IFI27interferon alpha inducible protein 27 [Source:HGNC Symbol;Acc:HGNC:5397]61930.0460.7127No
69SELLselectin L [Source:HGNC Symbol;Acc:HGNC:10720]72270.0000.6848No
70CCRL2C-C motif chemokine receptor like 2 [Source:HGNC Symbol;Acc:HGNC:1612]88520.0000.6409No
71BATF2basic leucine zipper ATF-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:25163]89790.0000.6375No
72LY6Elymphocyte antigen 6 family member E [Source:HGNC Symbol;Acc:HGNC:6727]93360.0000.6279No
73RTP4receptor transporter protein 4 [Source:HGNC Symbol;Acc:HGNC:23992]105880.0000.5940No
74IFI30IFI30 lysosomal thiol reductase [Source:HGNC Symbol;Acc:HGNC:5398]115910.0000.5670No
75BST2bone marrow stromal cell antigen 2 [Source:HGNC Symbol;Acc:HGNC:1119]125110.0000.5421No
76TMEM140transmembrane protein 140 [Source:HGNC Symbol;Acc:HGNC:21870]135150.0000.5150No
77IL4Rinterleukin 4 receptor [Source:HGNC Symbol;Acc:HGNC:6015]139290.0000.5038No
78IL7interleukin 7 [Source:HGNC Symbol;Acc:HGNC:6023]177580.0000.4004No
79CXCL11C-X-C motif chemokine ligand 11 [Source:HGNC Symbol;Acc:HGNC:10638]189850.0000.3672No
80NMIN-myc and STAT interactor [Source:HGNC Symbol;Acc:HGNC:7854]194040.0000.3559No
81LAMP3lysosomal associated membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:14582]216770.0000.2945No
82RNF31ring finger protein 31 [Source:HGNC Symbol;Acc:HGNC:16031]29172-0.2150.0931No
83NCOA7nuclear receptor coactivator 7 [Source:HGNC Symbol;Acc:HGNC:21081]29388-0.2680.0888No
84LPAR6lysophosphatidic acid receptor 6 [Source:HGNC Symbol;Acc:HGNC:15520]30812-0.5290.0534No
85ELF1E74 like ETS transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:3316]31394-0.7000.0416No
86SLC25A28solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]31818-0.8230.0348No
87IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]31994-0.8720.0350No
88B2Mbeta-2-microglobulin [Source:HGNC Symbol;Acc:HGNC:914]32512-1.0250.0268No
89NUB1negative regulator of ubiquitin like proteins 1 [Source:HGNC Symbol;Acc:HGNC:17623]32538-1.0290.0319No
90MVB12Amultivesicular body subunit 12A [Source:HGNC Symbol;Acc:HGNC:25153]32561-1.0360.0371No
91IRF2interferon regulatory factor 2 [Source:HGNC Symbol;Acc:HGNC:6117]32696-1.0880.0396No
92CD74CD74 molecule [Source:HGNC Symbol;Acc:HGNC:1697]32902-1.1670.0407No
93C1Scomplement C1s [Source:HGNC Symbol;Acc:HGNC:1247]33995-1.6170.0202No
94CNP2',3'-cyclic nucleotide 3' phosphodiesterase [Source:HGNC Symbol;Acc:HGNC:2158]34971-2.0880.0056No
95TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35491-2.4380.0053No
96GMPRguanosine monophosphate reductase [Source:HGNC Symbol;Acc:HGNC:4376]36004-2.8700.0077No
97IL15interleukin 15 [Source:HGNC Symbol;Acc:HGNC:5977]36710-3.8490.0103No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_ALPHA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_ALPHA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_ALPHA_RESPONSE