Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_MYC_TARGETS_V2
Enrichment Score (ES)0.554941
Normalized Enrichment Score (NES)1.2843032
Nominal p-value0.054166667
FDR q-value0.08984728
FWER p-Value0.277
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_MYC_TARGETS_V2   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]814.5870.0540Yes
2DUSP2dual specificity phosphatase 2 [Source:HGNC Symbol;Acc:HGNC:3068]1114.3990.1071Yes
3GRWD1glutamate rich WD repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:21270]5462.9120.1311Yes
4RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]6822.6840.1603Yes
5IPO4importin 4 [Source:HGNC Symbol;Acc:HGNC:19426]7282.5850.1908Yes
6RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]8902.2920.2145Yes
7UTP20UTP20 small subunit processome component [Source:HGNC Symbol;Acc:HGNC:17897]9692.2480.2400Yes
8NOP16NOP16 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:26934]10722.1050.2630Yes
9NOP2NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]10832.0950.2884Yes
10FARSAphenylalanyl-tRNA synthetase subunit alpha [Source:HGNC Symbol;Acc:HGNC:3592]11741.9740.3102Yes
11SLC19A1solute carrier family 19 member 1 [Source:HGNC Symbol;Acc:HGNC:10937]13401.8310.3282Yes
12BYSLbystin like [Source:HGNC Symbol;Acc:HGNC:1157]13861.7900.3489Yes
13NIP7nucleolar pre-rRNA processing protein NIP7 [Source:HGNC Symbol;Acc:HGNC:24328]16911.5410.3595Yes
14HK2hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]17141.5260.3776Yes
15MRTO4MRT4 homolog, ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:18477]17181.5250.3962Yes
16HSPE1heat shock protein family E (Hsp10) member 1 [Source:HGNC Symbol;Acc:HGNC:5269]17541.5040.4137Yes
17PUS1pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:15508]18561.4470.4287Yes
18IMP4IMP U3 small nucleolar ribonucleoprotein 4 [Source:HGNC Symbol;Acc:HGNC:30856]18901.4320.4454Yes
19PPRC1PPARG related coactivator 1 [Source:HGNC Symbol;Acc:HGNC:30025]19451.3920.4610Yes
20TCOF1treacle ribosome biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:11654]22591.3050.4685Yes
21SRMspermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]23851.2240.4802Yes
22PA2G4proliferation-associated 2G4 [Source:HGNC Symbol;Acc:HGNC:8550]24281.2010.4937Yes
23MYBBP1AMYB binding protein 1a [Source:HGNC Symbol;Acc:HGNC:7546]25941.1150.5030Yes
24DDX18DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]26221.1040.5157Yes
25PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]26601.0840.5280Yes
26WDR43WD repeat domain 43 [Source:HGNC Symbol;Acc:HGNC:28945]28381.0070.5356Yes
27NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]28451.0060.5477Yes
28MPHOSPH10M-phase phosphoprotein 10 [Source:HGNC Symbol;Acc:HGNC:7213]34240.7940.5419Yes
29HSPD1heat shock protein family D (Hsp60) member 1 [Source:HGNC Symbol;Acc:HGNC:5261]34370.7870.5512Yes
30LAS1LLAS1 like ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:25726]36250.7180.5549Yes
31RCL1RNA terminal phosphate cyclase like 1 [Source:HGNC Symbol;Acc:HGNC:17687]39730.6160.5531No
32PES1pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]41800.5510.5543No
33AIMP2aminoacyl tRNA synthetase complex interacting multifunctional protein 2 [Source:HGNC Symbol;Acc:HGNC:20609]45160.4670.5510No
34TBRG4transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]49520.3530.5436No
35NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]49630.3510.5476No
36WDR74WD repeat domain 74 [Source:HGNC Symbol;Acc:HGNC:25529]51400.3010.5465No
37GNL3G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]52910.2680.5458No
38PRMT3protein arginine methyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:30163]53360.2550.5477No
39NOC4Lnucleolar complex associated 4 homolog [Source:HGNC Symbol;Acc:HGNC:28461]55060.2160.5458No
40PPANpeter pan homolog [Source:HGNC Symbol;Acc:HGNC:9227]59110.1200.5363No
41DCTPP1dCTP pyrophosphatase 1 [Source:HGNC Symbol;Acc:HGNC:28777]60040.0970.5350No
42TMEM97transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]62050.0420.5302No
43NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]28671-0.083-0.0754No
44SUPV3L1Suv3 like RNA helicase [Source:HGNC Symbol;Acc:HGNC:11471]29525-0.305-0.0947No
45RABEPKRab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]30676-0.493-0.1198No
46PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]31198-0.641-0.1260No
47SLC29A2solute carrier family 29 member 2 [Source:HGNC Symbol;Acc:HGNC:11004]32390-0.998-0.1459No
48CDK4cyclin dependent kinase 4 [Source:HGNC Symbol;Acc:HGNC:1773]32564-1.037-0.1379No
49PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]32612-1.058-0.1262No
50NDUFAF4NADH:ubiquinone oxidoreductase complex assembly factor 4 [Source:HGNC Symbol;Acc:HGNC:21034]33816-1.530-0.1399No
51MCM5minichromosome maintenance complex component 5 [Source:HGNC Symbol;Acc:HGNC:6948]33849-1.543-0.1219No
52TFB2Mtranscription factor B2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:18559]33875-1.546-0.1036No
53EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]33961-1.598-0.0863No
54MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34493-1.883-0.0776No
55MAP3K6mitogen-activated protein kinase kinase kinase 6 [Source:HGNC Symbol;Acc:HGNC:6858]35530-2.472-0.0753No
56CBX3chromobox 3 [Source:HGNC Symbol;Acc:HGNC:1553]35784-2.687-0.0492No
57SORDsorbitol dehydrogenase [Source:HGNC Symbol;Acc:HGNC:11184]36422-3.377-0.0250No
58UNGuracil DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:12572]36532-3.5110.0151No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_MYC_TARGETS_V2   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_MYC_TARGETS_V2: Random ES distribution   
Gene set null distribution of ES for HALLMARK_MYC_TARGETS_V2