Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_TGF_BETA_SIGNALING
Enrichment Score (ES)0.5347206
Normalized Enrichment Score (NES)1.210079
Nominal p-value0.12781955
FDR q-value0.11581068
FWER p-Value0.43
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_TGF_BETA_SIGNALING   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]604.7030.0564Yes
2PMEPA1prostate transmembrane protein, androgen induced 1 [Source:HGNC Symbol;Acc:HGNC:14107]774.6020.1128Yes
3FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]1364.2830.1642Yes
4ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]2203.8420.2093Yes
5SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2393.7640.2553Yes
6SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]3553.3100.2931Yes
7ID2inhibitor of DNA binding 2 [Source:HGNC Symbol;Acc:HGNC:5361]3583.3050.3338Yes
8JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]3713.2860.3741Yes
9SKILSKI like proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10897]5332.9470.4061Yes
10BCAR3BCAR3 adaptor protein, NSP family member [Source:HGNC Symbol;Acc:HGNC:973]7092.6180.4337Yes
11TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]7842.4960.4626Yes
12SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]13451.8240.4700Yes
13THBS1thrombospondin 1 [Source:HGNC Symbol;Acc:HGNC:11785]13601.8100.4919Yes
14RAB31RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]14341.7300.5113Yes
15TGIF1TGFB induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]22431.3150.5057Yes
16UBE2D3ubiquitin conjugating enzyme E2 D3 [Source:HGNC Symbol;Acc:HGNC:12476]25371.1450.5120Yes
17ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]28860.9820.5147Yes
18PPP1CAprotein phosphatase 1 catalytic subunit alpha [Source:HGNC Symbol;Acc:HGNC:9281]32760.8440.5146Yes
19NCOR2nuclear receptor corepressor 2 [Source:HGNC Symbol;Acc:HGNC:7673]35000.7670.5181Yes
20CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]36600.7020.5224Yes
21HDAC1histone deacetylase 1 [Source:HGNC Symbol;Acc:HGNC:4852]38430.6610.5257Yes
22SKISKI proto-oncogene [Source:HGNC Symbol;Acc:HGNC:10896]40780.5830.5266Yes
23SMURF2SMAD specific E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:16809]42420.5330.5288Yes
24SMAD6SMAD family member 6 [Source:HGNC Symbol;Acc:HGNC:6772]42630.5270.5347Yes
25CDK9cyclin dependent kinase 9 [Source:HGNC Symbol;Acc:HGNC:1780]45780.4480.5318No
26PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]59140.1190.4972No
27SMURF1SMAD specific E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:16807]61010.0680.4930No
28WWTR1WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]75440.0000.4541No
29CDH1cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]94990.0000.4013No
30CDKN1Ccyclin dependent kinase inhibitor 1C [Source:HGNC Symbol;Acc:HGNC:1786]126630.0000.3159No
31TJP1tight junction protein 1 [Source:HGNC Symbol;Acc:HGNC:11827]135070.0000.2932No
32NOGnoggin [Source:HGNC Symbol;Acc:HGNC:7866]194210.0000.1335No
33LEFTY2left-right determination factor 2 [Source:HGNC Symbol;Acc:HGNC:3122]249750.000-0.0164No
34IFNGR2interferon gamma receptor 2 [Source:HGNC Symbol;Acc:HGNC:5440]252590.000-0.0241No
35MAP3K7mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]28826-0.131-0.1187No
36BMPR2bone morphogenetic protein receptor type 2 [Source:HGNC Symbol;Acc:HGNC:1078]28958-0.164-0.1202No
37APCAPC regulator of WNT signaling pathway [Source:HGNC Symbol;Acc:HGNC:583]29044-0.187-0.1202No
38FNTAfarnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]30136-0.356-0.1453No
39XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]30320-0.398-0.1453No
40ACVR1activin A receptor type 1 [Source:HGNC Symbol;Acc:HGNC:171]30534-0.459-0.1454No
41FKBP1AFKBP prolyl isomerase 1A [Source:HGNC Symbol;Acc:HGNC:3711]31137-0.625-0.1540No
42RHOAras homolog family member A [Source:HGNC Symbol;Acc:HGNC:667]31373-0.695-0.1517No
43PPM1Aprotein phosphatase, Mg2+/Mn2+ dependent 1A [Source:HGNC Symbol;Acc:HGNC:9275]31708-0.794-0.1509No
44HIPK2homeodomain interacting protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14402]32006-0.875-0.1481No
45LTBP2latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]32230-0.948-0.1425No
46BMPR1Abone morphogenetic protein receptor type 1A [Source:HGNC Symbol;Acc:HGNC:1076]32417-1.009-0.1350No
47ARID4BAT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]32727-1.104-0.1297No
48TRIM33tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]33152-1.263-0.1256No
49TGFBR1transforming growth factor beta receptor 1 [Source:HGNC Symbol;Acc:HGNC:11772]34890-2.032-0.1474No
50SMAD1SMAD family member 1 [Source:HGNC Symbol;Acc:HGNC:6767]35299-2.305-0.1300No
51SMAD3SMAD family member 3 [Source:HGNC Symbol;Acc:HGNC:6769]35651-2.573-0.1077No
52KLF10Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]36350-3.259-0.0863No
53SPTBN1spectrin beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11275]36830-4.068-0.0490No
54BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]36994-4.5340.0026No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_TGF_BETA_SIGNALING   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_TGF_BETA_SIGNALING: Random ES distribution   
Gene set null distribution of ES for HALLMARK_TGF_BETA_SIGNALING