Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_GAQ_versus_WT_NA.Nof1.cls
#WT_GAQ_versus_WT_NA_repos
PhenotypeNof1.cls#WT_GAQ_versus_WT_NA_repos
Upregulated in classWT_GAQ
GeneSetHALLMARK_UNFOLDED_PROTEIN_RESPONSE
Enrichment Score (ES)0.52246326
Normalized Enrichment Score (NES)1.3260236
Nominal p-value0.028735632
FDR q-value0.07980111
FWER p-Value0.196
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IFIT1interferon induced protein with tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:5407]1194.3570.0381Yes
2RRP9ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]6822.6840.0484Yes
3NABP1nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]7702.5250.0699Yes
4ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]7762.5080.0936Yes
5DNAJB9DnaJ heat shock protein family (Hsp40) member B9 [Source:HGNC Symbol;Acc:HGNC:6968]9772.2360.1094Yes
6WFS1wolframin ER transmembrane glycoprotein [Source:HGNC Symbol;Acc:HGNC:12762]10212.1760.1289Yes
7SRPRASRP receptor subunit alpha [Source:HGNC Symbol;Acc:HGNC:11307]10342.1530.1489Yes
8SLC7A5solute carrier family 7 member 5 [Source:HGNC Symbol;Acc:HGNC:11063]10392.1460.1692Yes
9CHAC1ChaC glutathione specific gamma-glutamylcyclotransferase 1 [Source:HGNC Symbol;Acc:HGNC:28680]11372.0170.1857Yes
10SDAD1SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]11392.0160.2048Yes
11HSPA5heat shock protein family A (Hsp70) member 5 [Source:HGNC Symbol;Acc:HGNC:5238]12571.8950.2196Yes
12HERPUD1homocysteine inducible ER protein with ubiquitin like domain 1 [Source:HGNC Symbol;Acc:HGNC:13744]13241.8500.2353Yes
13FUSFUS RNA binding protein [Source:HGNC Symbol;Acc:HGNC:4010]14201.7410.2493Yes
14TATDN2TatD DNase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28988]14801.6950.2638Yes
15DCP1Adecapping mRNA 1A [Source:HGNC Symbol;Acc:HGNC:18714]15691.6390.2769Yes
16ASNSasparagine synthetase (glutamine-hydrolyzing) [Source:HGNC Symbol;Acc:HGNC:753]15741.6340.2923Yes
17IARS1isoleucyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:5330]16951.5400.3037Yes
18STC2stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]18781.4380.3124Yes
19EXOSC1exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]19111.4190.3250Yes
20ATF4activating transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:786]22391.3190.3286Yes
21DCP2decapping mRNA 2 [Source:HGNC Symbol;Acc:HGNC:24452]22441.3140.3410Yes
22YWHAZtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:HGNC Symbol;Acc:HGNC:12855]22631.3020.3529Yes
23DKC1dyskerin pseudouridine synthase 1 [Source:HGNC Symbol;Acc:HGNC:2890]22961.2760.3641Yes
24ZBTB17zinc finger and BTB domain containing 17 [Source:HGNC Symbol;Acc:HGNC:12936]23711.2300.3738Yes
25SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]23881.2220.3849Yes
26CALRcalreticulin [Source:HGNC Symbol;Acc:HGNC:1455]24131.2080.3957Yes
27LSM4LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17259]24741.1820.4053Yes
28HYOU1hypoxia up-regulated 1 [Source:HGNC Symbol;Acc:HGNC:16931]25851.1220.4130Yes
29SRPRBSRP receptor subunit beta [Source:HGNC Symbol;Acc:HGNC:24085]26801.0750.4206Yes
30CEBPBCCAAT enhancer binding protein beta [Source:HGNC Symbol;Acc:HGNC:1834]27001.0630.4302Yes
31NOP56NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:15911]28451.0060.4358Yes
32EIF2S1eukaryotic translation initiation factor 2 subunit alpha [Source:HGNC Symbol;Acc:HGNC:3265]28471.0040.4453Yes
33EXOSC2exosome component 2 [Source:HGNC Symbol;Acc:HGNC:17097]30420.9250.4489Yes
34LSM1LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]31670.8810.4539Yes
35SERP1stress associated endoplasmic reticulum protein 1 [Source:HGNC Symbol;Acc:HGNC:10759]32310.8570.4603Yes
36MTHFD2methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:HGNC:7434]33630.8150.4645Yes
37NOP14NOP14 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:16821]34340.7890.4701Yes
38BANF1BAF nuclear assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:17397]35100.7650.4753Yes
39CXXC1CXXC finger protein 1 [Source:HGNC Symbol;Acc:HGNC:24343]35220.7580.4822Yes
40TTC37tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]35360.7540.4890Yes
41YIF1AYip1 interacting factor homolog A, membrane trafficking protein [Source:HGNC Symbol;Acc:HGNC:16688]35970.7310.4943Yes
42HSPA9heat shock protein family A (Hsp70) member 9 [Source:HGNC Symbol;Acc:HGNC:5244]37120.6890.4977Yes
43EDC4enhancer of mRNA decapping 4 [Source:HGNC Symbol;Acc:HGNC:17157]38040.6730.5017Yes
44CNOT4CCR4-NOT transcription complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:7880]39760.6160.5029Yes
45KIF5Bkinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]42360.5350.5009Yes
46TARS1threonyl-tRNA synthetase 1 [Source:HGNC Symbol;Acc:HGNC:11572]43520.5100.5027Yes
47CNOT6CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]45870.4440.5005Yes
48EIF4A1eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:HGNC:3282]46440.4300.5031Yes
49NFYAnuclear transcription factor Y subunit alpha [Source:HGNC Symbol;Acc:HGNC:7804]46460.4300.5072Yes
50EIF4G1eukaryotic translation initiation factor 4 gamma 1 [Source:HGNC Symbol;Acc:HGNC:3296]47000.4150.5097Yes
51EXOSC10exosome component 10 [Source:HGNC Symbol;Acc:HGNC:9138]47450.4040.5123Yes
52GEMIN4gem nuclear organelle associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]48200.3890.5140Yes
53NOLC1nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]49630.3510.5135Yes
54DDIT4DNA damage inducible transcript 4 [Source:HGNC Symbol;Acc:HGNC:24944]50600.3210.5139Yes
55NHP2NHP2 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:14377]50690.3180.5167Yes
56EIF4EBP1eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]50720.3170.5197Yes
57EIF2AK3eukaryotic translation initiation factor 2 alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:3255]52310.2800.5181Yes
58SSR1signal sequence receptor subunit 1 [Source:HGNC Symbol;Acc:HGNC:11323]52340.2800.5207Yes
59SPCS1signal peptidase complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:23401]54650.2250.5166Yes
60EIF4A3eukaryotic translation initiation factor 4A3 [Source:HGNC Symbol;Acc:HGNC:18683]54680.2250.5187Yes
61ATF6activating transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:791]55270.2120.5191Yes
62SEC31ASEC31 homolog A, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:17052]55960.1940.5191Yes
63DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]56050.1890.5207Yes
64BAG3BAG cochaperone 3 [Source:HGNC Symbol;Acc:HGNC:939]56120.1880.5223Yes
65RPS14ribosomal protein S14 [Source:HGNC Symbol;Acc:HGNC:10387]57460.1540.5202Yes
66XPOTexportin for tRNA [Source:HGNC Symbol;Acc:HGNC:12826]57590.1490.5212Yes
67EXOSC9exosome component 9 [Source:HGNC Symbol;Acc:HGNC:9137]57670.1490.5225Yes
68VEGFAvascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680]60320.0900.5162No
69SHC1SHC adaptor protein 1 [Source:HGNC Symbol;Acc:HGNC:10840]60600.0810.5162No
70ARFGAP1ADP ribosylation factor GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:15852]61480.0600.5144No
71CNOT2CCR4-NOT transcription complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:7878]63660.0030.5086No
72IGFBP1insulin like growth factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:5469]118780.0000.3596No
73DNAJA4DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]185830.0000.1783No
74CCL2C-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:10618]279610.000-0.0753No
75SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]28454-0.024-0.0884No
76EXOSC4exosome component 4 [Source:HGNC Symbol;Acc:HGNC:18189]28512-0.040-0.0896No
77PDIA5protein disulfide isomerase family A member 5 [Source:HGNC Symbol;Acc:HGNC:24811]28623-0.071-0.0919No
78EIF4A2eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:HGNC:3284]28640-0.077-0.0916No
79NPM1nucleophosmin 1 [Source:HGNC Symbol;Acc:HGNC:7910]28671-0.083-0.0916No
80PDIA6protein disulfide isomerase family A member 6 [Source:HGNC Symbol;Acc:HGNC:30168]28815-0.125-0.0943No
81SEC11ASEC11 homolog A, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:17718]28863-0.139-0.0942No
82TSPYL2TSPY like 2 [Source:HGNC Symbol;Acc:HGNC:24358]29019-0.181-0.0967No
83EIF4Eeukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:HGNC:3287]29067-0.195-0.0961No
84TUBB2Atubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]29080-0.198-0.0946No
85XBP1X-box binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12801]29189-0.218-0.0954No
86PSAT1phosphoserine aminotransferase 1 [Source:HGNC Symbol;Acc:HGNC:19129]29207-0.222-0.0938No
87ALDH18A1aldehyde dehydrogenase 18 family member A1 [Source:HGNC Symbol;Acc:HGNC:9722]29210-0.222-0.0917No
88GOSR2golgi SNAP receptor complex member 2 [Source:HGNC Symbol;Acc:HGNC:4431]29309-0.245-0.0921No
89SLC30A5solute carrier family 30 member 5 [Source:HGNC Symbol;Acc:HGNC:19089]29520-0.304-0.0949No
90DDX10DEAD-box helicase 10 [Source:HGNC Symbol;Acc:HGNC:2735]30045-0.333-0.1059No
91MTREXMtr4 exosome RNA helicase [Source:HGNC Symbol;Acc:HGNC:18734]30232-0.378-0.1073No
92ATP6V0D1ATPase H+ transporting V0 subunit d1 [Source:HGNC Symbol;Acc:HGNC:13724]30291-0.390-0.1052No
93PREBprolactin regulatory element binding [Source:HGNC Symbol;Acc:HGNC:9356]30347-0.404-0.1028No
94CEBPGCCAAT enhancer binding protein gamma [Source:HGNC Symbol;Acc:HGNC:1837]30352-0.405-0.0991No
95HSP90B1heat shock protein 90 beta family member 1 [Source:HGNC Symbol;Acc:HGNC:12028]30618-0.479-0.1017No
96KHSRPKH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]30716-0.505-0.0996No
97EXOC2exocyst complex component 2 [Source:HGNC Symbol;Acc:HGNC:24968]31607-0.767-0.1164No
98PAIP1poly(A) binding protein interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16945]31896-0.847-0.1161No
99CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]31998-0.873-0.1106No
100POP4POP4 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:30081]32247-0.953-0.1082No
101IMP3IMP U3 small nucleolar ribonucleoprotein 3 [Source:HGNC Symbol;Acc:HGNC:14497]32618-1.060-0.1082No
102DCTN1dynactin subunit 1 [Source:HGNC Symbol;Acc:HGNC:2711]32627-1.064-0.0983No
103EEF2eukaryotic translation elongation factor 2 [Source:HGNC Symbol;Acc:HGNC:3214]32728-1.104-0.0906No
104ERN1endoplasmic reticulum to nucleus signaling 1 [Source:HGNC Symbol;Acc:HGNC:3449]32812-1.136-0.0820No
105PARNpoly(A)-specific ribonuclease [Source:HGNC Symbol;Acc:HGNC:8609]33458-1.369-0.0865No
106EXOSC5exosome component 5 [Source:HGNC Symbol;Acc:HGNC:24662]33961-1.598-0.0849No
107NFYBnuclear transcription factor Y subunit beta [Source:HGNC Symbol;Acc:HGNC:7805]34115-1.678-0.0731No
108FKBP14FKBP prolyl isomerase 14 [Source:HGNC Symbol;Acc:HGNC:18625]34121-1.681-0.0573No
109EDEM1ER degradation enhancing alpha-mannosidase like protein 1 [Source:HGNC Symbol;Acc:HGNC:18967]35298-2.302-0.0673No
110ERO1Aendoplasmic reticulum oxidoreductase 1 alpha [Source:HGNC Symbol;Acc:HGNC:13280]35325-2.321-0.0460No
111KDELR3KDEL endoplasmic reticulum protein retention receptor 3 [Source:HGNC Symbol;Acc:HGNC:6306]35649-2.572-0.0303No
112H2AXH2A.X variant histone [Source:HGNC Symbol;Acc:HGNC:4739]35972-2.829-0.0122No
113WIPI1WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]36977-4.4750.0031No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_UNFOLDED_PROTEIN_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_UNFOLDED_PROTEIN_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_UNFOLDED_PROTEIN_RESPONSE