Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetCROONQUIST_IL6_DEPRIVATION_DN
Enrichment Score (ES)-0.7837235
Normalized Enrichment Score (NES)-1.6382216
Nominal p-value0.0
FDR q-value0.011997177
FWER p-Value0.16
Table: GSEA Results Summary



Fig 1: Enrichment plot: CROONQUIST_IL6_DEPRIVATION_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1SPP1secreted phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11255]4523.3300.0038No
2RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]17811.584-0.0245No
3ABHD5abhydrolase domain containing 5, lysophosphatidic acid acyltransferase [Source:HGNC Symbol;Acc:HGNC:21396]23331.214-0.0335No
4GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]25901.095-0.0352No
5CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]31470.848-0.0461No
6HMGA1high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:HGNC:5010]31880.824-0.0432No
7CDC25Acell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]32010.821-0.0396No
8SBNO2strawberry notch homolog 2 [Source:HGNC Symbol;Acc:HGNC:29158]33460.761-0.0398No
9PTPRCprotein tyrosine phosphatase receptor type C [Source:HGNC Symbol;Acc:HGNC:9666]37510.619-0.0478No
10SNRPA1small nuclear ribonucleoprotein polypeptide A' [Source:HGNC Symbol;Acc:HGNC:11152]45940.341-0.0689No
11ITM2Aintegral membrane protein 2A [Source:HGNC Symbol;Acc:HGNC:6173]52300.162-0.0853No
12DHFRdihydrofolate reductase [Source:HGNC Symbol;Acc:HGNC:2861]55540.153-0.0933No
13AASSaminoadipate-semialdehyde synthase [Source:HGNC Symbol;Acc:HGNC:17366]103470.000-0.2228No
14APOBEC3Bapolipoprotein B mRNA editing enzyme catalytic subunit 3B [Source:HGNC Symbol;Acc:HGNC:17352]123590.000-0.2771No
15FRZBfrizzled related protein [Source:HGNC Symbol;Acc:HGNC:3959]166830.000-0.3940No
16ZWINTZW10 interacting kinetochore protein [Source:HGNC Symbol;Acc:HGNC:13195]233600.000-0.5744No
17MYRFmyelin regulatory factor [Source:HGNC Symbol;Acc:HGNC:1181]28628-0.135-0.7162No
18TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]30117-0.515-0.7539No
19PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]30207-0.543-0.7537No
20KNTC1kinetochore associated 1 [Source:HGNC Symbol;Acc:HGNC:17255]30394-0.578-0.7559No
21ANP32Eacidic nuclear phosphoprotein 32 family member E [Source:HGNC Symbol;Acc:HGNC:16673]30578-0.627-0.7579No
22PCNAproliferating cell nuclear antigen [Source:HGNC Symbol;Acc:HGNC:8729]31440-0.872-0.7769Yes
23SPOUT1SPOUT domain containing methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:26933]31487-0.890-0.7739Yes
24GMPSguanine monophosphate synthase [Source:HGNC Symbol;Acc:HGNC:4378]31715-0.966-0.7754Yes
25RFC3replication factor C subunit 3 [Source:HGNC Symbol;Acc:HGNC:9971]31736-0.972-0.7712Yes
26HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]31758-0.979-0.7671Yes
27CDC45cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]32023-1.073-0.7691Yes
28CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]32153-1.113-0.7672Yes
29CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]32379-1.207-0.7675Yes
30KPNA2karyopherin subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:6395]32455-1.235-0.7636Yes
31SKP2S-phase kinase associated protein 2 [Source:HGNC Symbol;Acc:HGNC:10901]32548-1.271-0.7599Yes
32SEPHS1selenophosphate synthetase 1 [Source:HGNC Symbol;Acc:HGNC:19685]33075-1.497-0.7669Yes
33MCM3minichromosome maintenance complex component 3 [Source:HGNC Symbol;Acc:HGNC:6945]33403-1.555-0.7683Yes
34CKS1BCDC28 protein kinase regulatory subunit 1B [Source:HGNC Symbol;Acc:HGNC:19083]33975-1.818-0.7750Yes
35MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34046-1.854-0.7679Yes
36PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34181-1.920-0.7623Yes
37PLK4polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]34248-1.957-0.7547Yes
38CHAF1Achromatin assembly factor 1 subunit A [Source:HGNC Symbol;Acc:HGNC:1910]34259-1.967-0.7455Yes
39CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]34381-2.017-0.7390Yes
40BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]34617-2.156-0.7350Yes
41NASPnuclear autoantigenic sperm protein [Source:HGNC Symbol;Acc:HGNC:7644]34638-2.171-0.7251Yes
42FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]34796-2.278-0.7184Yes
43POLD1DNA polymerase delta 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9175]34800-2.282-0.7075Yes
44TPX2TPX2 microtubule nucleation factor [Source:HGNC Symbol;Acc:HGNC:1249]34811-2.286-0.6967Yes
45MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]34817-2.289-0.6859Yes
46POLE2DNA polymerase epsilon 2, accessory subunit [Source:HGNC Symbol;Acc:HGNC:9178]34863-2.322-0.6759Yes
47H2BC11H2B clustered histone 11 [Source:HGNC Symbol;Acc:HGNC:4761]34891-2.343-0.6654Yes
48UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]34921-2.364-0.6548Yes
49GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]34947-2.382-0.6440Yes
50DTYMKdeoxythymidylate kinase [Source:HGNC Symbol;Acc:HGNC:3061]34952-2.382-0.6326Yes
51SMC2structural maintenance of chromosomes 2 [Source:HGNC Symbol;Acc:HGNC:14011]35054-2.393-0.6238Yes
52GALK1galactokinase 1 [Source:HGNC Symbol;Acc:HGNC:4118]35092-2.416-0.6132Yes
53STILSTIL centriolar assembly protein [Source:HGNC Symbol;Acc:HGNC:10879]35121-2.440-0.6022Yes
54CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]35122-2.440-0.5905Yes
55CHEK1checkpoint kinase 1 [Source:HGNC Symbol;Acc:HGNC:1925]35152-2.473-0.5793Yes
56MAD2L1mitotic arrest deficient 2 like 1 [Source:HGNC Symbol;Acc:HGNC:6763]35187-2.501-0.5682Yes
57AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]35217-2.531-0.5568Yes
58TRIP13thyroid hormone receptor interactor 13 [Source:HGNC Symbol;Acc:HGNC:12307]35484-2.727-0.5509Yes
59CDC6cell division cycle 6 [Source:HGNC Symbol;Acc:HGNC:1744]35504-2.750-0.5382Yes
60SMC4structural maintenance of chromosomes 4 [Source:HGNC Symbol;Acc:HGNC:14013]35524-2.765-0.5254Yes
61KIFC1kinesin family member C1 [Source:HGNC Symbol;Acc:HGNC:6389]35525-2.767-0.5120Yes
62SPAG5sperm associated antigen 5 [Source:HGNC Symbol;Acc:HGNC:13452]35557-2.803-0.4994Yes
63NCAPHnon-SMC condensin I complex subunit H [Source:HGNC Symbol;Acc:HGNC:1112]35559-2.806-0.4859Yes
64STMN1stathmin 1 [Source:HGNC Symbol;Acc:HGNC:6510]35595-2.845-0.4732Yes
65MCM7minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:HGNC:6950]35624-2.879-0.4600Yes
66TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35635-2.889-0.4464Yes
67GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]35711-2.911-0.4344Yes
68GALEUDP-galactose-4-epimerase [Source:HGNC Symbol;Acc:HGNC:4116]35756-2.954-0.4214Yes
69LIG1DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598]35783-2.979-0.4078Yes
70TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]35797-2.987-0.3937Yes
71CDC20cell division cycle 20 [Source:HGNC Symbol;Acc:HGNC:1723]35809-2.998-0.3796Yes
72CENPEcentromere protein E [Source:HGNC Symbol;Acc:HGNC:1856]35839-3.018-0.3659Yes
73OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]35911-3.088-0.3529Yes
74PLK1polo like kinase 1 [Source:HGNC Symbol;Acc:HGNC:9077]35969-3.152-0.3393Yes
75SPC25SPC25 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:24031]36011-3.197-0.3250Yes
76KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]36034-3.229-0.3100Yes
77PTP4A3protein tyrosine phosphatase 4A3 [Source:HGNC Symbol;Acc:HGNC:9636]36043-3.241-0.2947Yes
78KIF22kinesin family member 22 [Source:HGNC Symbol;Acc:HGNC:6391]36079-3.255-0.2799Yes
79CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36104-3.290-0.2647Yes
80AURKBaurora kinase B [Source:HGNC Symbol;Acc:HGNC:11390]36135-3.335-0.2495Yes
81CCNFcyclin F [Source:HGNC Symbol;Acc:HGNC:1591]36199-3.393-0.2349Yes
82KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36211-3.412-0.2187Yes
83HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]36309-3.500-0.2045Yes
84BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36332-3.523-0.1882Yes
85RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36345-3.537-0.1715Yes
86BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36365-3.555-0.1549Yes
87MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]36500-3.700-0.1407Yes
88FOXM1forkhead box M1 [Source:HGNC Symbol;Acc:HGNC:3818]36503-3.702-0.1229Yes
89CCNA2cyclin A2 [Source:HGNC Symbol;Acc:HGNC:1578]36580-3.830-0.1065Yes
90MYBL2MYB proto-oncogene like 2 [Source:HGNC Symbol;Acc:HGNC:7548]36607-3.868-0.0886Yes
91KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36610-3.875-0.0700Yes
92DUTdeoxyuridine triphosphatase [Source:HGNC Symbol;Acc:HGNC:3078]36711-3.993-0.0535Yes
93WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36881-4.323-0.0372Yes
94CCNE2cyclin E2 [Source:HGNC Symbol;Acc:HGNC:1590]36922-4.425-0.0170Yes
95TK1thymidine kinase 1 [Source:HGNC Symbol;Acc:HGNC:11830]36948-4.4720.0038Yes
Table: GSEA details [plain text format]



Fig 2: CROONQUIST_IL6_DEPRIVATION_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: CROONQUIST_IL6_DEPRIVATION_DN: Random ES distribution   
Gene set null distribution of ES for CROONQUIST_IL6_DEPRIVATION_DN