Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetLEE_EARLY_T_LYMPHOCYTE_UP
Enrichment Score (ES)-0.8079302
Normalized Enrichment Score (NES)-1.7179216
Nominal p-value0.0
FDR q-value0.0014317986
FWER p-Value0.007
Table: GSEA Results Summary



Fig 1: Enrichment plot: LEE_EARLY_T_LYMPHOCYTE_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1AEBP1AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]7052.776-0.0061No
2RAPGEF5Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]18641.528-0.0302No
3SYKspleen associated tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:11491]22901.247-0.0359No
4GGHgamma-glutamyl hydrolase [Source:HGNC Symbol;Acc:HGNC:4248]25901.095-0.0389No
5SLC1A4solute carrier family 1 member 4 [Source:HGNC Symbol;Acc:HGNC:10942]27531.009-0.0385No
6CKS2CDC28 protein kinase regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:2000]31470.848-0.0452No
7CDC25Acell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]32010.821-0.0428No
8FAIMFas apoptotic inhibitory molecule [Source:HGNC Symbol;Acc:HGNC:18703]36720.644-0.0525No
9GALNT7polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]44010.394-0.0703No
10LETM1leucine zipper and EF-hand containing transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:6556]45710.347-0.0733No
11PRR11proline rich 11 [Source:HGNC Symbol;Acc:HGNC:25619]49380.248-0.0820No
12MPP1membrane palmitoylated protein 1 [Source:HGNC Symbol;Acc:HGNC:7219]51320.194-0.0863No
13RUFY3RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30285]57830.108-0.1034No
14MIR646HGMIR646 host gene [Source:HGNC Symbol;Acc:HGNC:27659]79070.000-0.1608No
15HHIPhedgehog interacting protein [Source:HGNC Symbol;Acc:HGNC:14866]79830.000-0.1628No
16TNFRSF21TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469]91520.000-0.1944No
17PON1paraoxonase 1 [Source:HGNC Symbol;Acc:HGNC:9204]107260.000-0.2369No
18CRNDEcolorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]113660.000-0.2542No
19RAG1recombination activating 1 [Source:HGNC Symbol;Acc:HGNC:9831]124080.000-0.2824No
20SCRN1secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]140040.000-0.3255No
21MZB1marginal zone B and B1 cell specific protein [Source:HGNC Symbol;Acc:HGNC:30125]146170.000-0.3420No
22PALLDpalladin, cytoskeletal associated protein [Source:HGNC Symbol;Acc:HGNC:17068]166110.000-0.3959No
23TMSB15Athymosin beta 15a [Source:HGNC Symbol;Acc:HGNC:30744]170790.000-0.4085No
24PALM2AKAP2PALM2 and AKAP2 fusion [Source:HGNC Symbol;Acc:HGNC:33529]179100.000-0.4310No
25MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]191830.000-0.4654No
26CPVLcarboxypeptidase vitellogenic like [Source:HGNC Symbol;Acc:HGNC:14399]207750.000-0.5084No
27NLGN4Xneuroligin 4 X-linked [Source:HGNC Symbol;Acc:HGNC:14287]226630.000-0.5594No
28ARPP21cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]257260.000-0.6422No
29TSHRthyroid stimulating hormone receptor [Source:HGNC Symbol;Acc:HGNC:12373]269450.000-0.6752No
30FAM72Cfamily with sequence similarity 72 member C [Source:HGNC Symbol;Acc:HGNC:30602]272470.000-0.6833No
31CD1ECD1e molecule [Source:HGNC Symbol;Acc:HGNC:1638]278930.000-0.7007No
32CD1BCD1b molecule [Source:HGNC Symbol;Acc:HGNC:1635]278960.000-0.7008No
33CD1ACD1a molecule [Source:HGNC Symbol;Acc:HGNC:1634]278970.000-0.7008No
34CD99CD99 molecule (Xg blood group) [Source:HGNC Symbol;Acc:HGNC:7082]280380.000-0.7046No
35GSE1Gse1 coiled-coil protein [Source:HGNC Symbol;Acc:HGNC:28979]28627-0.135-0.7198No
36GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]29483-0.358-0.7413No
37DNTTDNA nucleotidylexotransferase [Source:HGNC Symbol;Acc:HGNC:2983]29657-0.403-0.7441No
38TYMSthymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]30117-0.515-0.7541No
39RCAN1regulator of calcineurin 1 [Source:HGNC Symbol;Acc:HGNC:3040]30191-0.538-0.7535No
40PTTG1PTTG1 regulator of sister chromatid separation, securin [Source:HGNC Symbol;Acc:HGNC:9690]30207-0.543-0.7514No
41CENPWcentromere protein W [Source:HGNC Symbol;Acc:HGNC:21488]30312-0.563-0.7516No
42MCM10minichromosome maintenance 10 replication initiation factor [Source:HGNC Symbol;Acc:HGNC:18043]31243-0.829-0.7729No
43TUBB4Btubulin beta 4B class IVb [Source:HGNC Symbol;Acc:HGNC:20771]31976-1.055-0.7877No
44CDK1cyclin dependent kinase 1 [Source:HGNC Symbol;Acc:HGNC:1722]32153-1.113-0.7873No
45CENPAcentromere protein A [Source:HGNC Symbol;Acc:HGNC:1851]32379-1.207-0.7877No
46RAD51AP1RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]33128-1.519-0.8008Yes
47GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]33340-1.529-0.7994Yes
48DIAPH3diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]33524-1.608-0.7968Yes
49CEP128centrosomal protein 128 [Source:HGNC Symbol;Acc:HGNC:20359]33878-1.768-0.7981Yes
50LDLRAD4low density lipoprotein receptor class A domain containing 4 [Source:HGNC Symbol;Acc:HGNC:1224]34016-1.837-0.7932Yes
51MCM4minichromosome maintenance complex component 4 [Source:HGNC Symbol;Acc:HGNC:6947]34046-1.854-0.7853Yes
52LRR1leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]34151-1.904-0.7792Yes
53PCLAFPCNA clamp associated factor [Source:HGNC Symbol;Acc:HGNC:28961]34181-1.920-0.7710Yes
54NSD2nuclear receptor binding SET domain protein 2 [Source:HGNC Symbol;Acc:HGNC:12766]34280-1.977-0.7644Yes
55CCNB1cyclin B1 [Source:HGNC Symbol;Acc:HGNC:1579]34381-2.017-0.7577Yes
56BUB1BBUB1 mitotic checkpoint serine/threonine kinase B [Source:HGNC Symbol;Acc:HGNC:1149]34617-2.156-0.7539Yes
57UHRF1ubiquitin like with PHD and ring finger domains 1 [Source:HGNC Symbol;Acc:HGNC:12556]34722-2.232-0.7463Yes
58FANCIFA complementation group I [Source:HGNC Symbol;Acc:HGNC:25568]34796-2.278-0.7376Yes
59MCM2minichromosome maintenance complex component 2 [Source:HGNC Symbol;Acc:HGNC:6944]34817-2.289-0.7275Yes
60UBE2Cubiquitin conjugating enzyme E2 C [Source:HGNC Symbol;Acc:HGNC:15937]34921-2.364-0.7192Yes
61TUBBtubulin beta class I [Source:HGNC Symbol;Acc:HGNC:20778]34939-2.379-0.7085Yes
62GINS1GINS complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:28980]34947-2.382-0.6976Yes
63CDKN3cyclin dependent kinase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:1791]35122-2.440-0.6909Yes
64KIF20Akinesin family member 20A [Source:HGNC Symbol;Acc:HGNC:9787]35171-2.487-0.6805Yes
65AURKAaurora kinase A [Source:HGNC Symbol;Acc:HGNC:11393]35217-2.531-0.6699Yes
66E2F2E2F transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3114]35590-2.836-0.6667Yes
67TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35635-2.889-0.6544Yes
68UBE2Tubiquitin conjugating enzyme E2 T [Source:HGNC Symbol;Acc:HGNC:25009]35644-2.897-0.6410Yes
69DLGAP5DLG associated protein 5 [Source:HGNC Symbol;Acc:HGNC:16864]35697-2.900-0.6289Yes
70ATAD2ATPase family AAA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30123]35776-2.971-0.6171Yes
71CDCA3cell division cycle associated 3 [Source:HGNC Symbol;Acc:HGNC:14624]35805-2.996-0.6038Yes
72CXXC5CXXC finger protein 5 [Source:HGNC Symbol;Acc:HGNC:26943]35896-3.064-0.5919Yes
73OIP5Opa interacting protein 5 [Source:HGNC Symbol;Acc:HGNC:20300]35911-3.088-0.5779Yes
74DTLdenticleless E3 ubiquitin protein ligase homolog [Source:HGNC Symbol;Acc:HGNC:30288]35985-3.169-0.5650Yes
75MELKmaternal embryonic leucine zipper kinase [Source:HGNC Symbol;Acc:HGNC:16870]36017-3.205-0.5509Yes
76NCAPGnon-SMC condensin I complex subunit G [Source:HGNC Symbol;Acc:HGNC:24304]36020-3.209-0.5359Yes
77KIF14kinesin family member 14 [Source:HGNC Symbol;Acc:HGNC:19181]36034-3.229-0.5211Yes
78SGO2shugoshin 2 [Source:HGNC Symbol;Acc:HGNC:30812]36103-3.290-0.5076Yes
79CCNB2cyclin B2 [Source:HGNC Symbol;Acc:HGNC:1580]36104-3.290-0.4922Yes
80CEP70centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]36114-3.308-0.4770Yes
81CEP55centrosomal protein 55 [Source:HGNC Symbol;Acc:HGNC:1161]36161-3.361-0.4625Yes
82PBKPDZ binding kinase [Source:HGNC Symbol;Acc:HGNC:18282]36205-3.402-0.4477Yes
83KIF11kinesin family member 11 [Source:HGNC Symbol;Acc:HGNC:6388]36211-3.412-0.4319Yes
84BIRC5baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:HGNC:593]36250-3.453-0.4168Yes
85NUF2NUF2 component of NDC80 kinetochore complex [Source:HGNC Symbol;Acc:HGNC:14621]36263-3.468-0.4009Yes
86PRC1protein regulator of cytokinesis 1 [Source:HGNC Symbol;Acc:HGNC:9341]36268-3.475-0.3847Yes
87KIF18Bkinesin family member 18B [Source:HGNC Symbol;Acc:HGNC:27102]36308-3.499-0.3694Yes
88HMMRhyaluronan mediated motility receptor [Source:HGNC Symbol;Acc:HGNC:5012]36309-3.500-0.3531Yes
89HMGB3high mobility group box 3 [Source:HGNC Symbol;Acc:HGNC:5004]36321-3.512-0.3369Yes
90BUB1BUB1 mitotic checkpoint serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1148]36332-3.523-0.3207Yes
91RRM2ribonucleotide reductase regulatory subunit M2 [Source:HGNC Symbol;Acc:HGNC:10452]36345-3.537-0.3045Yes
92E2F8E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]36385-3.578-0.2888Yes
93KIF15kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]36462-3.668-0.2737Yes
94MKI67marker of proliferation Ki-67 [Source:HGNC Symbol;Acc:HGNC:7107]36500-3.700-0.2574Yes
95CENPUcentromere protein U [Source:HGNC Symbol;Acc:HGNC:21348]36525-3.754-0.2405Yes
96ADAadenosine deaminase [Source:HGNC Symbol;Acc:HGNC:186]36528-3.758-0.2230Yes
97NEK2NIMA related kinase 2 [Source:HGNC Symbol;Acc:HGNC:7745]36597-3.856-0.2068Yes
98NUSAP1nucleolar and spindle associated protein 1 [Source:HGNC Symbol;Acc:HGNC:18538]36602-3.862-0.1888Yes
99NEIL3nei like DNA glycosylase 3 [Source:HGNC Symbol;Acc:HGNC:24573]36609-3.872-0.1709Yes
100KIF2Ckinesin family member 2C [Source:HGNC Symbol;Acc:HGNC:6393]36610-3.875-0.1527Yes
101NDC80NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:16909]36726-4.014-0.1371Yes
102TTKTTK protein kinase [Source:HGNC Symbol;Acc:HGNC:12401]36761-4.065-0.1190Yes
103KNL1kinetochore scaffold 1 [Source:HGNC Symbol;Acc:HGNC:24054]36866-4.280-0.1018Yes
104E2F7E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]36898-4.358-0.0822Yes
105ASPMassembly factor for spindle microtubules [Source:HGNC Symbol;Acc:HGNC:19048]36959-4.497-0.0628Yes
106CDCA2cell division cycle associated 2 [Source:HGNC Symbol;Acc:HGNC:14623]36964-4.521-0.0418Yes
107DSCC1DNA replication and sister chromatid cohesion 1 [Source:HGNC Symbol;Acc:HGNC:24453]37036-4.755-0.0214Yes
108TFDP2transcription factor Dp-2 [Source:HGNC Symbol;Acc:HGNC:11751]37062-4.8900.0008Yes
Table: GSEA details [plain text format]



Fig 2: LEE_EARLY_T_LYMPHOCYTE_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: LEE_EARLY_T_LYMPHOCYTE_UP: Random ES distribution   
Gene set null distribution of ES for LEE_EARLY_T_LYMPHOCYTE_UP