Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetNEMETH_INFLAMMATORY_RESPONSE_LPS_UP
Enrichment Score (ES)0.88897085
Normalized Enrichment Score (NES)2.1795342
Nominal p-value0.0
FDR q-value0.0
FWER p-Value0.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1PTGS2prostaglandin-endoperoxide synthase 2 [Source:HGNC Symbol;Acc:HGNC:9605]324.9530.0233Yes
2IL1RNinterleukin 1 receptor antagonist [Source:HGNC Symbol;Acc:HGNC:6000]374.9380.0472Yes
3TNFRSF1BTNF receptor superfamily member 1B [Source:HGNC Symbol;Acc:HGNC:11917]454.8890.0708Yes
4BCL6BBCL6B transcription repressor [Source:HGNC Symbol;Acc:HGNC:1002]784.7830.0933Yes
5ODC1ornithine decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:8109]1094.5950.1149Yes
6TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]1164.5540.1369Yes
7SLFN12schlafen family member 12 [Source:HGNC Symbol;Acc:HGNC:25500]1384.4500.1580Yes
8RGS16regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]1534.3710.1789Yes
9IRGMimmunity related GTPase M [Source:HGNC Symbol;Acc:HGNC:29597]1614.3250.1998Yes
10MARCKSL1MARCKS like 1 [Source:HGNC Symbol;Acc:HGNC:7142]1634.3160.2208Yes
11BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]2474.0090.2381Yes
12C3AR1complement C3a receptor 1 [Source:HGNC Symbol;Acc:HGNC:1319]2513.9790.2574Yes
13STAT1signal transducer and activator of transcription 1 [Source:HGNC Symbol;Acc:HGNC:11362]2523.9780.2768Yes
14FURINfurin, paired basic amino acid cleaving enzyme [Source:HGNC Symbol;Acc:HGNC:8568]2583.9640.2960Yes
15PNPpurine nucleoside phosphorylase [Source:HGNC Symbol;Acc:HGNC:7892]2593.9630.3153Yes
16CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]2633.9520.3344Yes
17IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]2663.9400.3536Yes
18SLC11A1solute carrier family 11 member 1 [Source:HGNC Symbol;Acc:HGNC:10907]2773.8930.3723Yes
19NFKB1nuclear factor kappa B subunit 1 [Source:HGNC Symbol;Acc:HGNC:7794]2893.8420.3907Yes
20GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]3213.7130.4079Yes
21NFKBIANFKB inhibitor alpha [Source:HGNC Symbol;Acc:HGNC:7797]3303.6720.4256Yes
22SLFN12Lschlafen family member 12 like [Source:HGNC Symbol;Acc:HGNC:33920]3623.5700.4422Yes
23TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]3713.5460.4592Yes
24GLRXglutaredoxin [Source:HGNC Symbol;Acc:HGNC:4330]4383.3910.4740Yes
25TNIP1TNFAIP3 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16903]4443.3520.4902Yes
26CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]4473.3450.5064Yes
27TRIM25tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]4573.3210.5224Yes
28HCKHCK proto-oncogene, Src family tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:4840]4663.3030.5382Yes
29SRGNserglycin [Source:HGNC Symbol;Acc:HGNC:9361]4923.2310.5533Yes
30RHOCras homolog family member C [Source:HGNC Symbol;Acc:HGNC:669]5093.1810.5684Yes
31TXNRD1thioredoxin reductase 1 [Source:HGNC Symbol;Acc:HGNC:12437]5163.1590.5836Yes
32ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]5333.1060.5983Yes
33SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]5393.0980.6132Yes
34CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]5713.0680.6274Yes
35CLEC4DC-type lectin domain family 4 member D [Source:HGNC Symbol;Acc:HGNC:14554]5903.0240.6416Yes
36PMLpromyelocytic leukemia [Source:HGNC Symbol;Acc:HGNC:9113]5913.0200.6563Yes
37STK10serine/threonine kinase 10 [Source:HGNC Symbol;Acc:HGNC:11388]5953.0060.6709Yes
38ETS2ETS proto-oncogene 2, transcription factor [Source:HGNC Symbol;Acc:HGNC:3489]6532.8890.6834Yes
39ADARadenosine deaminase RNA specific [Source:HGNC Symbol;Acc:HGNC:225]6902.8160.6962Yes
40TGFB1transforming growth factor beta 1 [Source:HGNC Symbol;Acc:HGNC:11766]7152.7610.7090Yes
41IFRD1interferon related developmental regulator 1 [Source:HGNC Symbol;Acc:HGNC:5456]7412.7150.7215Yes
42MSR1macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]7652.6610.7339Yes
43GKglycerol kinase [Source:HGNC Symbol;Acc:HGNC:4289]7892.6150.7460Yes
44MYO10myosin X [Source:HGNC Symbol;Acc:HGNC:7593]8602.5820.7567Yes
45HCLS1hematopoietic cell-specific Lyn substrate 1 [Source:HGNC Symbol;Acc:HGNC:4844]8992.5240.7679Yes
46IER2immediate early response 2 [Source:HGNC Symbol;Acc:HGNC:28871]9132.4940.7797Yes
47LCP2lymphocyte cytosolic protein 2 [Source:HGNC Symbol;Acc:HGNC:6529]10262.2860.7878Yes
48TPST1tyrosylprotein sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:12020]11112.1810.7962Yes
49RNF11ring finger protein 11 [Source:HGNC Symbol;Acc:HGNC:10056]12382.0190.8026Yes
50CLN3CLN3 lysosomal/endosomal transmembrane protein, battenin [Source:HGNC Symbol;Acc:HGNC:2074]12731.9780.8113Yes
51CCL3C-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:10627]14161.8180.8164Yes
52ACSL4acyl-CoA synthetase long chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]15891.7710.8203Yes
53MAP2K1mitogen-activated protein kinase kinase 1 [Source:HGNC Symbol;Acc:HGNC:6840]16301.7280.8277Yes
54ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]16381.7170.8359Yes
55MLLT11MLLT11 transcription factor 7 cofactor [Source:HGNC Symbol;Acc:HGNC:16997]18461.5420.8378Yes
56SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]18731.5200.8445Yes
57SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]18771.5180.8518Yes
58HMGCR3-hydroxy-3-methylglutaryl-CoA reductase [Source:HGNC Symbol;Acc:HGNC:5006]18791.5180.8592Yes
59SLC2A1solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]19451.4760.8646Yes
60CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]19701.4560.8710Yes
61DEGS1delta 4-desaturase, sphingolipid 1 [Source:HGNC Symbol;Acc:HGNC:13709]22111.2950.8709Yes
62APBB1IPamyloid beta precursor protein binding family B member 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:17379]22361.2760.8764Yes
63JUNDJunD proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6206]22421.2730.8825Yes
64IL1RL1interleukin 1 receptor like 1 [Source:HGNC Symbol;Acc:HGNC:5998]22651.2560.8880Yes
65EIF1eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:HGNC:3249]24391.1530.8890Yes
66PIP5K1Bphosphatidylinositol-4-phosphate 5-kinase type 1 beta [Source:HGNC Symbol;Acc:HGNC:8995]27291.0180.8861No
67CITED2Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 [Source:HGNC Symbol;Acc:HGNC:1987]29590.9160.8844No
68PRKCDprotein kinase C delta [Source:HGNC Symbol;Acc:HGNC:9399]34580.7170.8744No
69WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]35690.6800.8748No
70MYADMmyeloid associated differentiation marker [Source:HGNC Symbol;Acc:HGNC:7544]36690.6450.8752No
71TOP1DNA topoisomerase I [Source:HGNC Symbol;Acc:HGNC:11986]36700.6440.8784No
72FCGR2BFc fragment of IgG receptor IIb [Source:HGNC Symbol;Acc:HGNC:3618]38410.5840.8766No
73RCN1reticulocalbin 1 [Source:HGNC Symbol;Acc:HGNC:9934]39690.5470.8759No
74SAP30Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]40290.5290.8768No
75DAB2DAB adaptor protein 2 [Source:HGNC Symbol;Acc:HGNC:2662]46500.3270.8617No
76KPNA3karyopherin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6396]50260.2210.8526No
77CCL23C-C motif chemokine ligand 23 [Source:HGNC Symbol;Acc:HGNC:10622]62160.0000.8205No
78TNFSF9TNF superfamily member 9 [Source:HGNC Symbol;Acc:HGNC:11939]87380.0000.7524No
79SLPIsecretory leukocyte peptidase inhibitor [Source:HGNC Symbol;Acc:HGNC:11092]91970.0000.7400No
80IFI16interferon gamma inducible protein 16 [Source:HGNC Symbol;Acc:HGNC:5395]114110.0000.6802No
81LILRB4leukocyte immunoglobulin like receptor B4 [Source:HGNC Symbol;Acc:HGNC:6608]133330.0000.6283No
82CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]240180.0000.3396No
83MAPKAPK2MAPK activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]29217-0.2910.2005No
84LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]30277-0.5610.1746No
85MT1Xmetallothionein 1X [Source:HGNC Symbol;Acc:HGNC:7405]34213-1.9360.0777No
Table: GSEA details [plain text format]



Fig 2: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: NEMETH_INFLAMMATORY_RESPONSE_LPS_UP: Random ES distribution   
Gene set null distribution of ES for NEMETH_INFLAMMATORY_RESPONSE_LPS_UP