Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetESC_J1_UP_EARLY.V1_DN
Enrichment Score (ES)0.4762929
Normalized Enrichment Score (NES)1.2945994
Nominal p-value0.0
FDR q-value0.10569229
FWER p-Value0.383
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_J1_UP_EARLY.V1_DN   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1GBP1guanylate binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4182]474.8820.0210Yes
2GBP2guanylate binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4183]1054.6080.0405Yes
3SOCS3suppressor of cytokine signaling 3 [Source:HGNC Symbol;Acc:HGNC:19391]1234.5140.0607Yes
4MYCMYC proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7553]1344.4610.0808Yes
5ZFP36ZFP36 ring finger protein [Source:HGNC Symbol;Acc:HGNC:12862]1684.2890.0994Yes
6ID3inhibitor of DNA binding 3, HLH protein [Source:HGNC Symbol;Acc:HGNC:5362]1694.2860.1190Yes
7EDN1endothelin 1 [Source:HGNC Symbol;Acc:HGNC:3176]1744.2650.1384Yes
8ID1inhibitor of DNA binding 1, HLH protein [Source:HGNC Symbol;Acc:HGNC:5360]1954.1900.1570Yes
9ADAP2ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]1984.1850.1760Yes
10SERPINE1serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]2274.0650.1938Yes
11CEBPDCCAAT enhancer binding protein delta [Source:HGNC Symbol;Acc:HGNC:1835]2633.9520.2109Yes
12BCL3BCL3 transcription coactivator [Source:HGNC Symbol;Acc:HGNC:998]2853.8750.2280Yes
13LPPLIM domain containing preferred translocation partner in lipoma [Source:HGNC Symbol;Acc:HGNC:6679]3053.7860.2448Yes
14TREX1three prime repair exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:12269]3323.6650.2608Yes
15UBA7ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]3353.6490.2774Yes
16JUNBJunB proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6205]3593.5930.2932Yes
17TMEM98transmembrane protein 98 [Source:HGNC Symbol;Acc:HGNC:24529]4913.2340.3044Yes
18ACTA1actin alpha 1, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:129]5173.1580.3182Yes
19ATF5activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]8822.5430.3199Yes
20GPATCH4G-patch domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25982]8892.5330.3313Yes
21C11orf24chromosome 11 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:1174]9032.5070.3424Yes
22NIFKnucleolar protein interacting with the FHA domain of MKI67 [Source:HGNC Symbol;Acc:HGNC:17838]9272.4700.3531Yes
23TRPS1transcriptional repressor GATA binding 1 [Source:HGNC Symbol;Acc:HGNC:12340]10142.3150.3613Yes
24RIOK2RIO kinase 2 [Source:HGNC Symbol;Acc:HGNC:18999]10352.2700.3711Yes
25LIMS2LIM zinc finger domain containing 2 [Source:HGNC Symbol;Acc:HGNC:16084]10862.2140.3799Yes
26TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]11272.1550.3886Yes
27PAFAH2platelet activating factor acetylhydrolase 2 [Source:HGNC Symbol;Acc:HGNC:8579]11832.0940.3967Yes
28STAT3signal transducer and activator of transcription 3 [Source:HGNC Symbol;Acc:HGNC:11364]11842.0920.4063Yes
29NAB2NGFI-A binding protein 2 [Source:HGNC Symbol;Acc:HGNC:7627]12651.9840.4132Yes
30RAB33ARAB33A, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9773]14541.8020.4163Yes
31ZBTB21zinc finger and BTB domain containing 21 [Source:HGNC Symbol;Acc:HGNC:13083]14841.8020.4237Yes
32MDN1midasin AAA ATPase 1 [Source:HGNC Symbol;Acc:HGNC:18302]17031.6410.4253Yes
33KTI12KTI12 chromatin associated homolog [Source:HGNC Symbol;Acc:HGNC:25160]17421.6090.4316Yes
34TRIB3tribbles pseudokinase 3 [Source:HGNC Symbol;Acc:HGNC:16228]17541.6040.4387Yes
35RRP12ribosomal RNA processing 12 homolog [Source:HGNC Symbol;Acc:HGNC:29100]17811.5840.4452Yes
36SLC30A1solute carrier family 30 member 1 [Source:HGNC Symbol;Acc:HGNC:11012]19551.4660.4472Yes
37PACRGLparkin coregulated like [Source:HGNC Symbol;Acc:HGNC:28442]19591.4650.4538Yes
38ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]19851.4380.4597Yes
39ATP9BATPase phospholipid transporting 9B (putative) [Source:HGNC Symbol;Acc:HGNC:13541]23851.1860.4543Yes
40NSUN4NOP2/Sun RNA methyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:31802]24421.1520.4580Yes
41BLOC1S4biogenesis of lysosomal organelles complex 1 subunit 4 [Source:HGNC Symbol;Acc:HGNC:24206]25631.1150.4599Yes
42BMS1BMS1 ribosome biogenesis factor [Source:HGNC Symbol;Acc:HGNC:23505]26421.0640.4626Yes
43TLE4TLE family member 4, transcriptional corepressor [Source:HGNC Symbol;Acc:HGNC:11840]29250.9310.4592Yes
44MED6mediator complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:19970]31440.8500.4572Yes
45BMP1bone morphogenetic protein 1 [Source:HGNC Symbol;Acc:HGNC:1067]32460.8030.4581Yes
46MTG2mitochondrial ribosome associated GTPase 2 [Source:HGNC Symbol;Acc:HGNC:16239]33400.7650.4591Yes
47PPCSphosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]34670.7110.4589Yes
48RELBRELB proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9956]35060.7060.4611Yes
49PHBprohibitin [Source:HGNC Symbol;Acc:HGNC:8912]35550.6850.4630Yes
50SAP30BPSAP30 binding protein [Source:HGNC Symbol;Acc:HGNC:30785]35600.6840.4660Yes
51WSB1WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:HGNC:19221]35690.6800.4689Yes
52MYL9myosin light chain 9 [Source:HGNC Symbol;Acc:HGNC:15754]35830.6770.4716Yes
53RRP8ribosomal RNA processing 8 [Source:HGNC Symbol;Acc:HGNC:29030]36820.6410.4719Yes
54ANXA5annexin A5 [Source:HGNC Symbol;Acc:HGNC:543]39510.5540.4671Yes
55HYAL2hyaluronidase 2 [Source:HGNC Symbol;Acc:HGNC:5321]39790.5440.4689Yes
56RPS6KB2ribosomal protein S6 kinase B2 [Source:HGNC Symbol;Acc:HGNC:10437]40580.5170.4691Yes
57UHRF1BP1LUHRF1 binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:29102]40660.5130.4713Yes
58UXTubiquitously expressed prefoldin like chaperone [Source:HGNC Symbol;Acc:HGNC:12641]40810.5080.4732Yes
59DNAJC24DnaJ heat shock protein family (Hsp40) member C24 [Source:HGNC Symbol;Acc:HGNC:26979]41420.4900.4738Yes
60BRWD1bromodomain and WD repeat domain containing 1 [Source:HGNC Symbol;Acc:HGNC:12760]42210.4600.4738Yes
61FBXO33F-box protein 33 [Source:HGNC Symbol;Acc:HGNC:19833]43070.4260.4735Yes
62FGF18fibroblast growth factor 18 [Source:HGNC Symbol;Acc:HGNC:3674]43220.4200.4750Yes
63TMC6transmembrane channel like 6 [Source:HGNC Symbol;Acc:HGNC:18021]43450.4120.4763Yes
64NOL12nucleolar protein 12 [Source:HGNC Symbol;Acc:HGNC:28585]44880.3700.4741No
65APOBRapolipoprotein B receptor [Source:HGNC Symbol;Acc:HGNC:24087]45450.3530.4742No
66DIMT1DIMT1 rRNA methyltransferase and ribosome maturation factor [Source:HGNC Symbol;Acc:HGNC:30217]48660.2690.4668No
67EEF1AKNMTeEF1A lysine and N-terminal methyltransferase [Source:HGNC Symbol;Acc:HGNC:24248]49490.2450.4657No
68FAM118Bfamily with sequence similarity 118 member B [Source:HGNC Symbol;Acc:HGNC:26110]49850.2340.4658No
69EGR1early growth response 1 [Source:HGNC Symbol;Acc:HGNC:3238]52460.1590.4595No
70DNAJC30DnaJ heat shock protein family (Hsp40) member C30 [Source:HGNC Symbol;Acc:HGNC:16410]53790.1530.4566No
71GSPT2G1 to S phase transition 2 [Source:HGNC Symbol;Acc:HGNC:4622]55300.1530.4533No
72GID8GID complex subunit 8 homolog [Source:HGNC Symbol;Acc:HGNC:15857]57070.1350.4491No
73DBR1debranching RNA lariats 1 [Source:HGNC Symbol;Acc:HGNC:15594]58660.0840.4452No
74MVKmevalonate kinase [Source:HGNC Symbol;Acc:HGNC:7530]59120.0710.4443No
75ZNF35zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]64660.0000.4293No
76FGF17fibroblast growth factor 17 [Source:HGNC Symbol;Acc:HGNC:3673]67340.0000.4221No
77TPD52L3TPD52 like 3 [Source:HGNC Symbol;Acc:HGNC:23382]84910.0000.3745No
78C16orf74chromosome 16 open reading frame 74 [Source:HGNC Symbol;Acc:HGNC:23362]91900.0000.3556No
79ADAM23ADAM metallopeptidase domain 23 [Source:HGNC Symbol;Acc:HGNC:202]95900.0000.3448No
80NINJ2ninjurin 2 [Source:HGNC Symbol;Acc:HGNC:7825]97370.0000.3409No
81CTRB1chymotrypsinogen B1 [Source:HGNC Symbol;Acc:HGNC:2521]108710.0000.3102No
82ERASES cell expressed Ras [Source:HGNC Symbol;Acc:HGNC:5174]114060.0000.2957No
83IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]117230.0000.2872No
84PTGISprostaglandin I2 synthase [Source:HGNC Symbol;Acc:HGNC:9603]119410.0000.2813No
85CNN1calponin 1 [Source:HGNC Symbol;Acc:HGNC:2155]122420.0000.2731No
86TGM1transglutaminase 1 [Source:HGNC Symbol;Acc:HGNC:11777]123990.0000.2689No
87TGM3transglutaminase 3 [Source:HGNC Symbol;Acc:HGNC:11779]124060.0000.2688No
88GAP43growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]126990.0000.2609No
89GBX2gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]128250.0000.2575No
90ZFP57ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]131670.0000.2482No
91TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]133640.0000.2429No
92SYT12synaptotagmin 12 [Source:HGNC Symbol;Acc:HGNC:18381]135970.0000.2366No
93TAGLNtransgelin [Source:HGNC Symbol;Acc:HGNC:11553]137010.0000.2338No
94TLR9toll like receptor 9 [Source:HGNC Symbol;Acc:HGNC:15633]141680.0000.2212No
95SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]158380.0000.1760No
96FETUBfetuin B [Source:HGNC Symbol;Acc:HGNC:3658]169080.0000.1471No
97RPP25ribonuclease P and MRP subunit p25 [Source:HGNC Symbol;Acc:HGNC:30361]169100.0000.1470No
98VAX2ventral anterior homeobox 2 [Source:HGNC Symbol;Acc:HGNC:12661]172760.0000.1371No
99PPP1R1Aprotein phosphatase 1 regulatory inhibitor subunit 1A [Source:HGNC Symbol;Acc:HGNC:9286]175940.0000.1286No
100DRD4dopamine receptor D4 [Source:HGNC Symbol;Acc:HGNC:3025]184690.0000.1049No
101BMP4bone morphogenetic protein 4 [Source:HGNC Symbol;Acc:HGNC:1071]190840.0000.0883No
102FOXD3forkhead box D3 [Source:HGNC Symbol;Acc:HGNC:3804]206670.0000.0454No
103LAMC2laminin subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:6493]207380.0000.0435No
104LAMA1laminin subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:6481]207620.0000.0429No
105LALBAlactalbumin alpha [Source:HGNC Symbol;Acc:HGNC:6480]210170.0000.0360No
106ZBP1Z-DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:16176]231170.000-0.0209No
107GNA14G protein subunit alpha 14 [Source:HGNC Symbol;Acc:HGNC:4382]240260.000-0.0454No
108AMHanti-Mullerian hormone [Source:HGNC Symbol;Acc:HGNC:464]245350.000-0.0592No
109RAMP1receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]250240.000-0.0724No
110INHBBinhibin subunit beta B [Source:HGNC Symbol;Acc:HGNC:6067]250380.000-0.0728No
111TCF15transcription factor 15 [Source:HGNC Symbol;Acc:HGNC:11627]252000.000-0.0771No
112SPRY4sprouty RTK signaling antagonist 4 [Source:HGNC Symbol;Acc:HGNC:15533]255160.000-0.0857No
113SLC16A2solute carrier family 16 member 2 [Source:HGNC Symbol;Acc:HGNC:10923]262110.000-0.1045No
114C19orf48chromosome 19 open reading frame 48 [Source:HGNC Symbol;Acc:HGNC:29667]267710.000-0.1196No
115MAPTmicrotubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]281090.000-0.1558No
116USP38ubiquitin specific peptidase 38 [Source:HGNC Symbol;Acc:HGNC:20067]28173-0.000-0.1575No
117EPOPelongin BC and polycomb repressive complex 2 associated protein [Source:HGNC Symbol;Acc:HGNC:34493]28336-0.047-0.1617No
118VPS33BVPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]28515-0.099-0.1661No
119ARHGEF10LRho guanine nucleotide exchange factor 10 like [Source:HGNC Symbol;Acc:HGNC:25540]28564-0.113-0.1669No
120DPYSL5dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]28692-0.151-0.1696No
121SPCS3signal peptidase complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:26212]28824-0.186-0.1723No
122STK4serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:11408]28854-0.198-0.1722No
123UBE2J1ubiquitin conjugating enzyme E2 J1 [Source:HGNC Symbol;Acc:HGNC:17598]28883-0.206-0.1720No
124BAG5BAG cochaperone 5 [Source:HGNC Symbol;Acc:HGNC:941]29170-0.279-0.1785No
125LUC7L3LUC7 like 3 pre-mRNA splicing factor [Source:HGNC Symbol;Acc:HGNC:24309]29220-0.291-0.1785No
126LLPHLLP homolog, long-term synaptic facilitation factor [Source:HGNC Symbol;Acc:HGNC:28229]29330-0.316-0.1800No
127ANXA3annexin A3 [Source:HGNC Symbol;Acc:HGNC:541]29395-0.333-0.1802No
128PTPN22protein tyrosine phosphatase non-receptor type 22 [Source:HGNC Symbol;Acc:HGNC:9652]29428-0.342-0.1795No
129RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]29526-0.370-0.1804No
130ETV4ETS variant transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:3493]29622-0.395-0.1812No
131ARHGAP35Rho GTPase activating protein 35 [Source:HGNC Symbol;Acc:HGNC:4591]30011-0.485-0.1895No
132MAPK7mitogen-activated protein kinase 7 [Source:HGNC Symbol;Acc:HGNC:6880]30055-0.499-0.1884No
133CCDC59coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]30091-0.509-0.1870No
134LTBlymphotoxin beta [Source:HGNC Symbol;Acc:HGNC:6711]30277-0.561-0.1895No
135B3GALT6beta-1,3-galactosyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:17978]30334-0.563-0.1884No
136FKBPLFKBP prolyl isomerase like [Source:HGNC Symbol;Acc:HGNC:13949]30592-0.631-0.1925No
137MRPS11mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:HGNC:14050]30719-0.663-0.1929No
138SFNstratifin [Source:HGNC Symbol;Acc:HGNC:10773]30897-0.712-0.1944No
139SLC66A1solute carrier family 66 member 1 [Source:HGNC Symbol;Acc:HGNC:26001]31091-0.780-0.1961No
140REM2RRAD and GEM like GTPase 2 [Source:HGNC Symbol;Acc:HGNC:20248]31494-0.895-0.2029No
141CENPBcentromere protein B [Source:HGNC Symbol;Acc:HGNC:1852]31502-0.897-0.1990No
142KLF1Kruppel like factor 1 [Source:HGNC Symbol;Acc:HGNC:6345]31536-0.907-0.1957No
143DUSP6dual specificity phosphatase 6 [Source:HGNC Symbol;Acc:HGNC:3072]31865-1.011-0.2000No
144DCLRE1BDNA cross-link repair 1B [Source:HGNC Symbol;Acc:HGNC:17641]32152-1.113-0.2027No
145TSPYL4TSPY like 4 [Source:HGNC Symbol;Acc:HGNC:21559]32311-1.180-0.2016No
146QSER1glutamine and serine rich 1 [Source:HGNC Symbol;Acc:HGNC:26154]33030-1.478-0.2143No
147NUDT11nudix hydrolase 11 [Source:HGNC Symbol;Acc:HGNC:18011]33318-1.529-0.2151No
148CCN1cellular communication network factor 1 [Source:HGNC Symbol;Acc:HGNC:2654]33381-1.543-0.2097No
149VWA5Avon Willebrand factor A domain containing 5A [Source:HGNC Symbol;Acc:HGNC:6658]33475-1.590-0.2050No
150KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33505-1.604-0.1984No
151DAPP1dual adaptor of phosphotyrosine and 3-phosphoinositides 1 [Source:HGNC Symbol;Acc:HGNC:16500]33527-1.611-0.1916No
152MAD1L1mitotic arrest deficient 1 like 1 [Source:HGNC Symbol;Acc:HGNC:6762]33739-1.705-0.1896No
153EMP2epithelial membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:3334]33827-1.742-0.1840No
154NAPSAnapsin A aspartic peptidase [Source:HGNC Symbol;Acc:HGNC:13395]33955-1.804-0.1792No
155RECQLRecQ like helicase [Source:HGNC Symbol;Acc:HGNC:9948]34212-1.935-0.1773No
156ZFP36L1ZFP36 ring finger protein like 1 [Source:HGNC Symbol;Acc:HGNC:1107]34395-2.034-0.1729No
157MRASmuscle RAS oncogene homolog [Source:HGNC Symbol;Acc:HGNC:7227]34409-2.043-0.1640No
158HASPINhistone H3 associated protein kinase [Source:HGNC Symbol;Acc:HGNC:19682]34995-2.383-0.1689No
159H2BC4H2B clustered histone 4 [Source:HGNC Symbol;Acc:HGNC:4757]35003-2.383-0.1582No
160AP4M1adaptor related protein complex 4 subunit mu 1 [Source:HGNC Symbol;Acc:HGNC:574]35076-2.406-0.1492No
161ANGPTL4angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]35095-2.418-0.1387No
162ENTPD4ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]35182-2.496-0.1296No
163CRYL1crystallin lambda 1 [Source:HGNC Symbol;Acc:HGNC:18246]35356-2.633-0.1223No
164ERFETS2 repressor factor [Source:HGNC Symbol;Acc:HGNC:3444]35378-2.656-0.1107No
165TREM2triggering receptor expressed on myeloid cells 2 [Source:HGNC Symbol;Acc:HGNC:17761]35719-2.918-0.1066No
166PPP2R3Aprotein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]35774-2.966-0.0945No
167TRAIPTRAF interacting protein [Source:HGNC Symbol;Acc:HGNC:30764]35797-2.987-0.0815No
168CIRBPcold inducible RNA binding protein [Source:HGNC Symbol;Acc:HGNC:1982]36100-3.283-0.0747No
169CORO2Acoronin 2A [Source:HGNC Symbol;Acc:HGNC:2255]36873-4.294-0.0760No
170REEP6receptor accessory protein 6 [Source:HGNC Symbol;Acc:HGNC:30078]36882-4.332-0.0564No
171KLF4Kruppel like factor 4 [Source:HGNC Symbol;Acc:HGNC:6348]36934-4.443-0.0375No
172RNASE4ribonuclease A family member 4 [Source:HGNC Symbol;Acc:HGNC:10047]36967-4.531-0.0177No
173TFEBtranscription factor EB [Source:HGNC Symbol;Acc:HGNC:11753]36982-4.5950.0029No
Table: GSEA details [plain text format]



Fig 2: ESC_J1_UP_EARLY.V1_DN   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_J1_UP_EARLY.V1_DN: Random ES distribution   
Gene set null distribution of ES for ESC_J1_UP_EARLY.V1_DN