Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_NA
GeneSetESC_V6.5_UP_EARLY.V1_UP
Enrichment Score (ES)-0.5658706
Normalized Enrichment Score (NES)-1.2349793
Nominal p-value0.05075594
FDR q-value0.44639304
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: ESC_V6.5_UP_EARLY.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TNFRSF1BTNF receptor superfamily member 1B [Source:HGNC Symbol;Acc:HGNC:11917]454.8890.0272No
2ARHGEF3Rho guanine nucleotide exchange factor 3 [Source:HGNC Symbol;Acc:HGNC:683]5383.1010.0318No
3ECE1endothelin converting enzyme 1 [Source:HGNC Symbol;Acc:HGNC:3146]5743.0630.0487No
4AGERadvanced glycosylation end-product specific receptor [Source:HGNC Symbol;Acc:HGNC:320]6302.9420.0642No
5PSMB9proteasome 20S subunit beta 9 [Source:HGNC Symbol;Acc:HGNC:9546]8462.6010.0735No
6HIVEP3HIVEP zinc finger 3 [Source:HGNC Symbol;Acc:HGNC:13561]9052.5060.0865No
7GADD45Ggrowth arrest and DNA damage inducible gamma [Source:HGNC Symbol;Acc:HGNC:4097]11092.1850.0937No
8SASH1SAM and SH3 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19182]14071.8300.0963No
9CBWD1COBW domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17134]14201.8160.1065No
10ARAP1ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:HGNC:16925]14251.8130.1169No
11ENGendoglin [Source:HGNC Symbol;Acc:HGNC:3349]15561.8010.1238No
12TMCO4transmembrane and coiled-coil domains 4 [Source:HGNC Symbol;Acc:HGNC:27393]17581.6010.1277No
13CHD7chromodomain helicase DNA binding protein 7 [Source:HGNC Symbol;Acc:HGNC:20626]21441.3310.1250No
14WDFY3WD repeat and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20751]22601.2600.1292No
15ARID3BAT-rich interaction domain 3B [Source:HGNC Symbol;Acc:HGNC:14350]25741.1060.1271No
16TEX9testis expressed 9 [Source:HGNC Symbol;Acc:HGNC:29585]26671.0510.1307No
17PTPN23protein tyrosine phosphatase non-receptor type 23 [Source:HGNC Symbol;Acc:HGNC:14406]27551.0070.1342No
18RAI1retinoic acid induced 1 [Source:HGNC Symbol;Acc:HGNC:9834]32980.7830.1241No
19IGSF8immunoglobulin superfamily member 8 [Source:HGNC Symbol;Acc:HGNC:17813]34530.7190.1241No
20DOC2Adouble C2 domain alpha [Source:HGNC Symbol;Acc:HGNC:2985]35900.6740.1243No
21PRKACBprotein kinase cAMP-activated catalytic subunit beta [Source:HGNC Symbol;Acc:HGNC:9381]39000.5680.1192No
22BMP10bone morphogenetic protein 10 [Source:HGNC Symbol;Acc:HGNC:20869]40280.5290.1189No
23EFNB2ephrin B2 [Source:HGNC Symbol;Acc:HGNC:3227]40620.5160.1210No
24GABRR2gamma-aminobutyric acid type A receptor subunit rho2 [Source:HGNC Symbol;Acc:HGNC:4091]41190.4960.1223No
25ZDHHC6zinc finger DHHC-type palmitoyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:19160]46960.3150.1086No
26RASAL2RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]49170.2560.1041No
27NME3NME/NM23 nucleoside diphosphate kinase 3 [Source:HGNC Symbol;Acc:HGNC:7851]49670.2410.1042No
28CSNK1G1casein kinase 1 gamma 1 [Source:HGNC Symbol;Acc:HGNC:2454]50230.2220.1040No
29ABCC6ATP binding cassette subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:57]51040.1990.1029No
30ERCC2ERCC excision repair 2, TFIIH core complex helicase subunit [Source:HGNC Symbol;Acc:HGNC:3434]52120.1680.1010No
31TMEM42transmembrane protein 42 [Source:HGNC Symbol;Acc:HGNC:28444]52610.1540.1006No
32CCDC114coiled-coil domain containing 114 [Source:HGNC Symbol;Acc:HGNC:26560]56770.1450.0902No
33CELSR3cadherin EGF LAG seven-pass G-type receptor 3 [Source:HGNC Symbol;Acc:HGNC:3230]56910.1410.0907No
34RPRD2regulation of nuclear pre-mRNA domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29039]57570.1160.0896No
35GDPD3glycerophosphodiester phosphodiesterase domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28638]58860.0770.0866No
36ZNF865zinc finger protein 865 [Source:HGNC Symbol;Acc:HGNC:38705]59960.0390.0839No
37CCNKcyclin K [Source:HGNC Symbol;Acc:HGNC:1596]60580.0230.0823No
38PRICKLE1prickle planar cell polarity protein 1 [Source:HGNC Symbol;Acc:HGNC:17019]67060.0000.0648No
39AQP2aquaporin 2 [Source:HGNC Symbol;Acc:HGNC:634]68980.0000.0597No
40CASTOR3CASTOR family member 3 [Source:HGNC Symbol;Acc:HGNC:29954]71800.0000.0520No
41FBP1fructose-bisphosphatase 1 [Source:HGNC Symbol;Acc:HGNC:3606]81150.0000.0267No
42GPA33glycoprotein A33 [Source:HGNC Symbol;Acc:HGNC:4445]83920.0000.0193No
43SOX11SRY-box transcription factor 11 [Source:HGNC Symbol;Acc:HGNC:11191]86880.0000.0113No
44OPRD1opioid receptor delta 1 [Source:HGNC Symbol;Acc:HGNC:8153]89250.0000.0049No
45ADAM1BADAM metallopeptidase domain 1B (pseudogene) [Source:HGNC Symbol;Acc:HGNC:44366]95800.000-0.0128No
46SLC23A1solute carrier family 23 member 1 [Source:HGNC Symbol;Acc:HGNC:10974]97250.000-0.0167No
47GRM8glutamate metabotropic receptor 8 [Source:HGNC Symbol;Acc:HGNC:4600]98520.000-0.0201No
48HIGD1CHIG1 hypoxia inducible domain family member 1C [Source:HGNC Symbol;Acc:HGNC:28044]109620.000-0.0502No
49LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]112360.000-0.0575No
50PDZK1PDZ domain containing 1 [Source:HGNC Symbol;Acc:HGNC:8821]112640.000-0.0583No
51CGNL1cingulin like 1 [Source:HGNC Symbol;Acc:HGNC:25931]113240.000-0.0599No
52RYR3ryanodine receptor 3 [Source:HGNC Symbol;Acc:HGNC:10485]118400.000-0.0738No
53TMEM121transmembrane protein 121 [Source:HGNC Symbol;Acc:HGNC:20511]133640.000-0.1151No
54WT1WT1 transcription factor [Source:HGNC Symbol;Acc:HGNC:12796]134710.000-0.1179No
55LPAR4lysophosphatidic acid receptor 4 [Source:HGNC Symbol;Acc:HGNC:4478]136410.000-0.1225No
56SYTL2synaptotagmin like 2 [Source:HGNC Symbol;Acc:HGNC:15585]147290.000-0.1519No
57LRIG1leucine rich repeats and immunoglobulin like domains 1 [Source:HGNC Symbol;Acc:HGNC:17360]151220.000-0.1626No
58B4GALNT2beta-1,4-N-acetyl-galactosaminyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:24136]153190.000-0.1679No
59PCP4Purkinje cell protein 4 [Source:HGNC Symbol;Acc:HGNC:8742]153920.000-0.1698No
60ENPP2ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:3357]155820.000-0.1749No
61CA4carbonic anhydrase 4 [Source:HGNC Symbol;Acc:HGNC:1375]156110.000-0.1757No
62SLC35G3solute carrier family 35 member G3 [Source:HGNC Symbol;Acc:HGNC:26848]158380.000-0.1818No
63TCEAL1transcription elongation factor A like 1 [Source:HGNC Symbol;Acc:HGNC:11616]158700.000-0.1827No
64C9complement C9 [Source:HGNC Symbol;Acc:HGNC:1358]160130.000-0.1865No
65GPR153G protein-coupled receptor 153 [Source:HGNC Symbol;Acc:HGNC:23618]163520.000-0.1957No
66ANKRD2ankyrin repeat domain 2 [Source:HGNC Symbol;Acc:HGNC:495]165400.000-0.2007No
67DLC1DLC1 Rho GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:2897]165730.000-0.2016No
68DLL3delta like canonical Notch ligand 3 [Source:HGNC Symbol;Acc:HGNC:2909]166190.000-0.2028No
69SLC5A11solute carrier family 5 member 11 [Source:HGNC Symbol;Acc:HGNC:23091]167480.000-0.2063No
70SPOCK2SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 [Source:HGNC Symbol;Acc:HGNC:13564]169930.000-0.2129No
71DRC1dynein regulatory complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24245]184790.000-0.2531No
72LTFlactotransferrin [Source:HGNC Symbol;Acc:HGNC:6720]187280.000-0.2598No
73MYBMYB proto-oncogene, transcription factor [Source:HGNC Symbol;Acc:HGNC:7545]191830.000-0.2721No
74NRLneural retina leucine zipper [Source:HGNC Symbol;Acc:HGNC:8002]194010.000-0.2780No
75OTX2orthodenticle homeobox 2 [Source:HGNC Symbol;Acc:HGNC:8522]194440.000-0.2791No
76CORTcortistatin [Source:HGNC Symbol;Acc:HGNC:2257]203780.000-0.3044No
77LIPFlipase F, gastric type [Source:HGNC Symbol;Acc:HGNC:6622]203940.000-0.3048No
78AIREautoimmune regulator [Source:HGNC Symbol;Acc:HGNC:360]204140.000-0.3053No
79FOXQ1forkhead box Q1 [Source:HGNC Symbol;Acc:HGNC:20951]204810.000-0.3071No
80IFNA2interferon alpha 2 [Source:HGNC Symbol;Acc:HGNC:5423]217610.000-0.3417No
81WNT3AWnt family member 3A [Source:HGNC Symbol;Acc:HGNC:15983]218560.000-0.3443No
82FGF5fibroblast growth factor 5 [Source:HGNC Symbol;Acc:HGNC:3683]225750.000-0.3637No
83SLC29A4solute carrier family 29 member 4 [Source:HGNC Symbol;Acc:HGNC:23097]229640.000-0.3742No
84ARHGEF16Rho guanine nucleotide exchange factor 16 [Source:HGNC Symbol;Acc:HGNC:15515]231560.000-0.3794No
85OCLNoccludin [Source:HGNC Symbol;Acc:HGNC:8104]233610.000-0.3849No
86ITIH3inter-alpha-trypsin inhibitor heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:6168]241600.000-0.4065No
87ZG16zymogen granule protein 16 [Source:HGNC Symbol;Acc:HGNC:30961]242170.000-0.4080No
88PKDREJpolycystin family receptor for egg jelly [Source:HGNC Symbol;Acc:HGNC:9015]248100.000-0.4241No
89TERTtelomerase reverse transcriptase [Source:HGNC Symbol;Acc:HGNC:11730]251260.000-0.4326No
90CACNG3calcium voltage-gated channel auxiliary subunit gamma 3 [Source:HGNC Symbol;Acc:HGNC:1407]253370.000-0.4383No
91SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]263860.000-0.4667No
92TTPAalpha tocopherol transfer protein [Source:HGNC Symbol;Acc:HGNC:12404]272930.000-0.4912No
93F13A1coagulation factor XIII A chain [Source:HGNC Symbol;Acc:HGNC:3531]277280.000-0.5030No
94KLC2kinesin light chain 2 [Source:HGNC Symbol;Acc:HGNC:20716]28372-0.057-0.5200No
95SGTBsmall glutamine rich tetratricopeptide repeat containing beta [Source:HGNC Symbol;Acc:HGNC:23567]29003-0.232-0.5357No
96ATP8B2ATPase phospholipid transporting 8B2 [Source:HGNC Symbol;Acc:HGNC:13534]29025-0.238-0.5349No
97LIMD2LIM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28142]29266-0.302-0.5397No
98PURBpurine rich element binding protein B [Source:HGNC Symbol;Acc:HGNC:9702]29465-0.352-0.5430No
99POU3F1POU class 3 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9214]29490-0.360-0.5416No
100ZMAT5zinc finger matrin-type 5 [Source:HGNC Symbol;Acc:HGNC:28046]29500-0.365-0.5397No
101GATAD2BGATA zinc finger domain containing 2B [Source:HGNC Symbol;Acc:HGNC:30778]29959-0.470-0.5494No
102ACSS1acyl-CoA synthetase short chain family member 1 [Source:HGNC Symbol;Acc:HGNC:16091]30522-0.613-0.5610No
103SH3RF1SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:HGNC:17650]30702-0.659-0.5620Yes
104SCAPSREBF chaperone [Source:HGNC Symbol;Acc:HGNC:30634]30703-0.659-0.5582Yes
105WIPF1WAS/WASL interacting protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12736]30926-0.719-0.5601Yes
106BBXBBX high mobility group box domain containing [Source:HGNC Symbol;Acc:HGNC:14422]31111-0.787-0.5605Yes
107ADAMTSL4ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]31173-0.806-0.5574Yes
108PMFBP1polyamine modulated factor 1 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17728]31298-0.851-0.5559Yes
109PTK7protein tyrosine kinase 7 (inactive) [Source:HGNC Symbol;Acc:HGNC:9618]31524-0.904-0.5567Yes
110GPD1glycerol-3-phosphate dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:4455]31540-0.907-0.5519Yes
111SPEF1sperm flagellar 1 [Source:HGNC Symbol;Acc:HGNC:15874]31593-0.924-0.5479Yes
112FAM189Bfamily with sequence similarity 189 member B [Source:HGNC Symbol;Acc:HGNC:1233]31601-0.926-0.5427Yes
113RNF123ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]31606-0.927-0.5374Yes
114MGAMAX dimerization protein MGA [Source:HGNC Symbol;Acc:HGNC:14010]31716-0.966-0.5348Yes
115RUNX1RUNX family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10471]31835-1.006-0.5321Yes
116DACH1dachshund family transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:2663]32044-1.081-0.5315Yes
117GPRC5BG protein-coupled receptor class C group 5 member B [Source:HGNC Symbol;Acc:HGNC:13308]32045-1.081-0.5252Yes
118SP1Sp1 transcription factor [Source:HGNC Symbol;Acc:HGNC:11205]32134-1.106-0.5212Yes
119MLLT1MLLT1 super elongation complex subunit [Source:HGNC Symbol;Acc:HGNC:7134]32390-1.212-0.5211Yes
120MDFIMyoD family inhibitor [Source:HGNC Symbol;Acc:HGNC:6967]32582-1.286-0.5188Yes
121TMEM186transmembrane protein 186 [Source:HGNC Symbol;Acc:HGNC:24530]32597-1.286-0.5117Yes
122SELENOPselenoprotein P [Source:HGNC Symbol;Acc:HGNC:10751]33028-1.477-0.5148Yes
123OTUD7AOTU deubiquitinase 7A [Source:HGNC Symbol;Acc:HGNC:20718]33342-1.529-0.5144Yes
124SSX2IPSSX family member 2 interacting protein [Source:HGNC Symbol;Acc:HGNC:16509]33434-1.569-0.5077Yes
125VPS39VPS39 subunit of HOPS complex [Source:HGNC Symbol;Acc:HGNC:20593]33491-1.598-0.5000Yes
126MBD4methyl-CpG binding domain 4, DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:6919]33501-1.604-0.4909Yes
127KLF13Kruppel like factor 13 [Source:HGNC Symbol;Acc:HGNC:13672]33505-1.604-0.4817Yes
128PARP6poly(ADP-ribose) polymerase family member 6 [Source:HGNC Symbol;Acc:HGNC:26921]33600-1.647-0.4747Yes
129SIMC1SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]33647-1.664-0.4662Yes
130ZPBPzona pellucida binding protein [Source:HGNC Symbol;Acc:HGNC:15662]33754-1.711-0.4592Yes
131STIM1stromal interaction molecule 1 [Source:HGNC Symbol;Acc:HGNC:11386]34064-1.865-0.4567Yes
132NARFnuclear prelamin A recognition factor [Source:HGNC Symbol;Acc:HGNC:29916]34175-1.917-0.4486Yes
133SYT3synaptotagmin 3 [Source:HGNC Symbol;Acc:HGNC:11511]34217-1.940-0.4384Yes
134HTRA2HtrA serine peptidase 2 [Source:HGNC Symbol;Acc:HGNC:14348]34311-1.998-0.4293Yes
135ARHGAP27Rho GTPase activating protein 27 [Source:HGNC Symbol;Acc:HGNC:31813]34339-2.012-0.4184Yes
136ZNF771zinc finger protein 771 [Source:HGNC Symbol;Acc:HGNC:29653]34416-2.045-0.4086Yes
137TNRC6Btrinucleotide repeat containing adaptor 6B [Source:HGNC Symbol;Acc:HGNC:29190]34455-2.064-0.3976Yes
138PHF21APHD finger protein 21A [Source:HGNC Symbol;Acc:HGNC:24156]34458-2.065-0.3857Yes
139TEX2testis expressed 2 [Source:HGNC Symbol;Acc:HGNC:30884]34741-2.247-0.3803Yes
140SUV39H2suppressor of variegation 3-9 homolog 2 [Source:HGNC Symbol;Acc:HGNC:17287]34898-2.350-0.3709Yes
141PCYT2phosphate cytidylyltransferase 2, ethanolamine [Source:HGNC Symbol;Acc:HGNC:8756]34903-2.352-0.3573Yes
142CLEC11AC-type lectin domain containing 11A [Source:HGNC Symbol;Acc:HGNC:10576]35006-2.383-0.3463Yes
143SLC16A3solute carrier family 16 member 3 [Source:HGNC Symbol;Acc:HGNC:10924]35146-2.469-0.3357Yes
144CEP131centrosomal protein 131 [Source:HGNC Symbol;Acc:HGNC:29511]35172-2.489-0.3219Yes
145SMPD2sphingomyelin phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:11121]35306-2.593-0.3105Yes
146IRX2iroquois homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14359]35320-2.602-0.2957Yes
147MAST3microtubule associated serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:19036]35360-2.639-0.2815Yes
148NCOA2nuclear receptor coactivator 2 [Source:HGNC Symbol;Acc:HGNC:7669]35364-2.640-0.2662Yes
149MAGI3membrane associated guanylate kinase, WW and PDZ domain containing 3 [Source:HGNC Symbol;Acc:HGNC:29647]35368-2.647-0.2510Yes
150SYT8synaptotagmin 8 [Source:HGNC Symbol;Acc:HGNC:19264]35375-2.655-0.2357Yes
151CRATcarnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]35429-2.680-0.2216Yes
152KIF21Akinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]35626-2.880-0.2102Yes
153GSTT2glutathione S-transferase theta 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:4642]36069-3.246-0.2033Yes
154MBOAT1membrane bound O-acyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21579]36110-3.302-0.1852Yes
155EGLN3egl-9 family hypoxia inducible factor 3 [Source:HGNC Symbol;Acc:HGNC:14661]36282-3.493-0.1696Yes
156HES6hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]36367-3.556-0.1512Yes
157ETFBKMTelectron transfer flavoprotein subunit beta lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:28739]36451-3.647-0.1323Yes
158TMEM158transmembrane protein 158 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:30293]36574-3.827-0.1134Yes
159KCNC1potassium voltage-gated channel subfamily C member 1 [Source:HGNC Symbol;Acc:HGNC:6233]36576-3.827-0.0912Yes
160VEGFBvascular endothelial growth factor B [Source:HGNC Symbol;Acc:HGNC:12681]36704-3.990-0.0715Yes
161HDAC11histone deacetylase 11 [Source:HGNC Symbol;Acc:HGNC:19086]36917-4.409-0.0516Yes
162CYP27A1cytochrome P450 family 27 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2605]37045-4.808-0.0272Yes
163DEPTORDEP domain containing MTOR interacting protein [Source:HGNC Symbol;Acc:HGNC:22953]37061-4.8880.0008Yes
Table: GSEA details [plain text format]



Fig 2: ESC_V6.5_UP_EARLY.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: ESC_V6.5_UP_EARLY.V1_UP: Random ES distribution   
Gene set null distribution of ES for ESC_V6.5_UP_EARLY.V1_UP