Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetKRAS.BREAST_UP.V1_UP
Enrichment Score (ES)0.4638147
Normalized Enrichment Score (NES)1.2307851
Nominal p-value0.021505376
FDR q-value0.12623031
FWER p-Value0.565
Table: GSEA Results Summary



Fig 1: Enrichment plot: KRAS.BREAST_UP.V1_UP   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1LIFLIF interleukin 6 family cytokine [Source:HGNC Symbol;Acc:HGNC:6596]154.9810.0519Yes
2IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]164.9730.1042Yes
3MMP9matrix metallopeptidase 9 [Source:HGNC Symbol;Acc:HGNC:7176]1114.5900.1499Yes
4TRAF1TNF receptor associated factor 1 [Source:HGNC Symbol;Acc:HGNC:12031]1354.4600.1962Yes
5IL13RA2interleukin 13 receptor subunit alpha 2 [Source:HGNC Symbol;Acc:HGNC:5975]2414.0280.2357Yes
6TNFAIP3TNF alpha induced protein 3 [Source:HGNC Symbol;Acc:HGNC:11896]2713.9230.2761Yes
7ACP3acid phosphatase 3 [Source:HGNC Symbol;Acc:HGNC:125]4133.4180.3082Yes
8GLRXglutaredoxin [Source:HGNC Symbol;Acc:HGNC:4330]4383.3910.3432Yes
9IL2RGinterleukin 2 receptor subunit gamma [Source:HGNC Symbol;Acc:HGNC:6010]9352.4520.3556Yes
10DHRS9dehydrogenase/reductase 9 [Source:HGNC Symbol;Acc:HGNC:16888]10772.2270.3752Yes
11PPP1R15Aprotein phosphatase 1 regulatory subunit 15A [Source:HGNC Symbol;Acc:HGNC:14375]11772.1050.3946Yes
12SYPsynaptophysin [Source:HGNC Symbol;Acc:HGNC:11506]11892.0770.4161Yes
13PRDM1PR/SET domain 1 [Source:HGNC Symbol;Acc:HGNC:9346]18881.5100.4131Yes
14BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]21311.3350.4206Yes
15IL1RL1interleukin 1 receptor like 1 [Source:HGNC Symbol;Acc:HGNC:5998]22651.2560.4302Yes
16BAIAP3BAI1 associated protein 3 [Source:HGNC Symbol;Acc:HGNC:948]22931.2450.4426Yes
17COL9A3collagen type IX alpha 3 chain [Source:HGNC Symbol;Acc:HGNC:2219]25061.1390.4488Yes
18DNAJA4DnaJ heat shock protein family (Hsp40) member A4 [Source:HGNC Symbol;Acc:HGNC:14885]27850.9920.4517Yes
19TAGLN3transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]29240.9310.4577Yes
20AKAP12A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]32560.8010.4572Yes
21CTNNA2catenin alpha 2 [Source:HGNC Symbol;Acc:HGNC:2510]33140.7750.4638Yes
22KCNJ14potassium inwardly rectifying channel subfamily J member 14 [Source:HGNC Symbol;Acc:HGNC:6260]40260.5300.4501No
23TLR8toll like receptor 8 [Source:HGNC Symbol;Acc:HGNC:15632]46070.3380.4380No
24CDSNcorneodesmosin [Source:HGNC Symbol;Acc:HGNC:1802]46610.3250.4400No
25PDE3Bphosphodiesterase 3B [Source:HGNC Symbol;Acc:HGNC:8779]50140.2250.4328No
26MKRN3makorin ring finger protein 3 [Source:HGNC Symbol;Acc:HGNC:7114]52770.1530.4273No
27CEACAM1CEA cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:1814]53440.1530.4272No
28TAPT1transmembrane anterior posterior transformation 1 [Source:HGNC Symbol;Acc:HGNC:26887]57890.1060.4163No
29CCL16C-C motif chemokine ligand 16 [Source:HGNC Symbol;Acc:HGNC:10614]62100.0000.4049No
30CCL22C-C motif chemokine ligand 22 [Source:HGNC Symbol;Acc:HGNC:10621]62170.0000.4047No
31SCG5secretogranin V [Source:HGNC Symbol;Acc:HGNC:10816]63680.0000.4007No
32DEFB4Adefensin beta 4A [Source:HGNC Symbol;Acc:HGNC:2767]70210.0000.3830No
33ADAMDEC1ADAM like decysin 1 [Source:HGNC Symbol;Acc:HGNC:16299]70440.0000.3824No
34MAPK4mitogen-activated protein kinase 4 [Source:HGNC Symbol;Acc:HGNC:6878]83330.0000.3476No
35OPRPNopiorphin prepropeptide [Source:HGNC Symbol;Acc:HGNC:17279]83640.0000.3468No
36CYB5R2cytochrome b5 reductase 2 [Source:HGNC Symbol;Acc:HGNC:24376]83690.0000.3467No
37PRRX1paired related homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9142]84860.0000.3435No
38CALB1calbindin 1 [Source:HGNC Symbol;Acc:HGNC:1434]86480.0000.3392No
39SOX17SRY-box transcription factor 17 [Source:HGNC Symbol;Acc:HGNC:18122]86710.0000.3386No
40CLSTN2calsyntenin 2 [Source:HGNC Symbol;Acc:HGNC:17448]87670.0000.3360No
41CDK2AP2P3cyclin dependent kinase 2 associated protein 2 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:38494]95590.0000.3146No
42KCNA2potassium voltage-gated channel subfamily A member 2 [Source:HGNC Symbol;Acc:HGNC:6220]95780.0000.3141No
43NPAS1neuronal PAS domain protein 1 [Source:HGNC Symbol;Acc:HGNC:7894]96630.0000.3118No
44KCNK3potassium two pore domain channel subfamily K member 3 [Source:HGNC Symbol;Acc:HGNC:6278]97210.0000.3103No
45FAM30Afamily with sequence similarity 30 member A [Source:HGNC Symbol;Acc:HGNC:19955]97590.0000.3093No
46SPRR2Bsmall proline rich protein 2B [Source:HGNC Symbol;Acc:HGNC:11262]100780.0000.3007No
47IL1RAPL1interleukin 1 receptor accessory protein like 1 [Source:HGNC Symbol;Acc:HGNC:5996]103020.0000.2947No
48ERC2-IT1ERC2 intronic transcript 1 [Source:HGNC Symbol;Acc:HGNC:1229]103330.0000.2938No
49KLK12kallikrein related peptidase 12 [Source:HGNC Symbol;Acc:HGNC:6360]103650.0000.2930No
50KCNA10potassium voltage-gated channel subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:6219]107240.0000.2833No
51PPBPpro-platelet basic protein [Source:HGNC Symbol;Acc:HGNC:9240]108840.0000.2790No
52ACKR4atypical chemokine receptor 4 [Source:HGNC Symbol;Acc:HGNC:1611]110090.0000.2757No
53GPR37L1G protein-coupled receptor 37 like 1 [Source:HGNC Symbol;Acc:HGNC:14923]111250.0000.2725No
54PRB4proline rich protein BstNI subfamily 4 [Source:HGNC Symbol;Acc:HGNC:9340]113850.0000.2655No
55USH2Ausherin [Source:HGNC Symbol;Acc:HGNC:12601]114210.0000.2646No
56TMPRSS4transmembrane serine protease 4 [Source:HGNC Symbol;Acc:HGNC:11878]114820.0000.2630No
57CLPScolipase [Source:HGNC Symbol;Acc:HGNC:2085]116260.0000.2591No
58IGFBP3insulin like growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:5472]117230.0000.2565No
59PSCAprostate stem cell antigen [Source:HGNC Symbol;Acc:HGNC:9500]117410.0000.2560No
60CMA1chymase 1 [Source:HGNC Symbol;Acc:HGNC:2097]117680.0000.2553No
61ESM1endothelial cell specific molecule 1 [Source:HGNC Symbol;Acc:HGNC:3466]118430.0000.2533No
62ATP12AATPase H+/K+ transporting non-gastric alpha2 subunit [Source:HGNC Symbol;Acc:HGNC:13816]120740.0000.2471No
63IGF2insulin like growth factor 2 [Source:HGNC Symbol;Acc:HGNC:5466]123480.0000.2397No
64TAAR5trace amine associated receptor 5 [Source:HGNC Symbol;Acc:HGNC:30236]124850.0000.2360No
65GULP1GULP PTB domain containing engulfment adaptor 1 [Source:HGNC Symbol;Acc:HGNC:18649]130380.0000.2211No
66OR2C1olfactory receptor family 2 subfamily C member 1 [Source:HGNC Symbol;Acc:HGNC:8242]133620.0000.2124No
67IL37interleukin 37 [Source:HGNC Symbol;Acc:HGNC:15563]137320.0000.2024No
68NDUFA4L2NDUFA4 mitochondrial complex associated like 2 [Source:HGNC Symbol;Acc:HGNC:29836]139000.0000.1979No
69EFNA5ephrin A5 [Source:HGNC Symbol;Acc:HGNC:3225]142330.0000.1889No
70HSD11B1hydroxysteroid 11-beta dehydrogenase 1 [Source:HGNC Symbol;Acc:HGNC:5208]143180.0000.1866No
71ZP4zona pellucida glycoprotein 4 [Source:HGNC Symbol;Acc:HGNC:15770]147030.0000.1762No
72IL17RBinterleukin 17 receptor B [Source:HGNC Symbol;Acc:HGNC:18015]150110.0000.1679No
73SPINK1serine peptidase inhibitor Kazal type 1 [Source:HGNC Symbol;Acc:HGNC:11244]153850.0000.1578No
74IL1R2interleukin 1 receptor type 2 [Source:HGNC Symbol;Acc:HGNC:5994]157980.0000.1467No
75AMELYamelogenin Y-linked [Source:HGNC Symbol;Acc:HGNC:462]159020.0000.1439No
76MGLLmonoglyceride lipase [Source:HGNC Symbol;Acc:HGNC:17038]170860.0000.1119No
77CEACAM3CEA cell adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:1815]178590.0000.0910No
78PCDHGA11protocadherin gamma subfamily A, 11 [Source:HGNC Symbol;Acc:HGNC:8698]188390.0000.0645No
79SPON2spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]189550.0000.0614No
80COL9A1collagen type IX alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2217]189870.0000.0605No
81BMP6bone morphogenetic protein 6 [Source:HGNC Symbol;Acc:HGNC:1073]190810.0000.0580No
82NRLneural retina leucine zipper [Source:HGNC Symbol;Acc:HGNC:8002]194010.0000.0494No
83CXCL3C-X-C motif chemokine ligand 3 [Source:HGNC Symbol;Acc:HGNC:4604]194790.0000.0473No
84CXCL2C-X-C motif chemokine ligand 2 [Source:HGNC Symbol;Acc:HGNC:4603]194800.0000.0473No
85HSD17B2hydroxysteroid 17-beta dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:5211]198060.0000.0385No
86GABRA3gamma-aminobutyric acid type A receptor subunit alpha3 [Source:HGNC Symbol;Acc:HGNC:4077]200090.0000.0330No
87NR1H4nuclear receptor subfamily 1 group H member 4 [Source:HGNC Symbol;Acc:HGNC:7967]200100.0000.0330No
88ETV2ETS variant transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:3491]200530.0000.0319No
89SAMD14sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]203950.0000.0227No
90NPPBnatriuretic peptide B [Source:HGNC Symbol;Acc:HGNC:7940]207020.0000.0144No
91CFAP43cilia and flagella associated protein 43 [Source:HGNC Symbol;Acc:HGNC:26684]207440.0000.0133No
92KCNJ16potassium inwardly rectifying channel subfamily J member 16 [Source:HGNC Symbol;Acc:HGNC:6262]209220.0000.0085No
93SNAP25synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]212060.0000.0008No
94SPACA1sperm acrosome associated 1 [Source:HGNC Symbol;Acc:HGNC:14967]212220.0000.0004No
95KCNK15potassium two pore domain channel subfamily K member 15 [Source:HGNC Symbol;Acc:HGNC:13814]212920.000-0.0015No
96ALPPalkaline phosphatase, placental [Source:HGNC Symbol;Acc:HGNC:439]214130.000-0.0047No
97FAM155Bfamily with sequence similarity 155 member B [Source:HGNC Symbol;Acc:HGNC:30701]214910.000-0.0068No
98ADGRD2adhesion G protein-coupled receptor D2 [Source:HGNC Symbol;Acc:HGNC:18651]214940.000-0.0068No
99CSF2colony stimulating factor 2 [Source:HGNC Symbol;Acc:HGNC:2434]215760.000-0.0090No
100WNT16Wnt family member 16 [Source:HGNC Symbol;Acc:HGNC:16267]218800.000-0.0172No
101HAS2hyaluronan synthase 2 [Source:HGNC Symbol;Acc:HGNC:4819]219980.000-0.0204No
102ANO2anoctamin 2 [Source:HGNC Symbol;Acc:HGNC:1183]221580.000-0.0247No
103SMPXsmall muscle protein X-linked [Source:HGNC Symbol;Acc:HGNC:11122]226510.000-0.0380No
104OCA2OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]232600.000-0.0545No
105A2Malpha-2-macroglobulin [Source:HGNC Symbol;Acc:HGNC:7]242300.000-0.0807No
106FMO2flavin containing dimethylaniline monoxygenase 2 [Source:HGNC Symbol;Acc:HGNC:3770]244020.000-0.0853No
107TERTtelomerase reverse transcriptase [Source:HGNC Symbol;Acc:HGNC:11730]251260.000-0.1049No
108KLK6kallikrein related peptidase 6 [Source:HGNC Symbol;Acc:HGNC:6367]253700.000-0.1115No
109TFPItissue factor pathway inhibitor [Source:HGNC Symbol;Acc:HGNC:11760]255130.000-0.1153No
110MMP10matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]256000.000-0.1176No
111GJA8gap junction protein alpha 8 [Source:HGNC Symbol;Acc:HGNC:4281]257040.000-0.1204No
112KRT34keratin 34 [Source:HGNC Symbol;Acc:HGNC:6452]268030.000-0.1501No
113CRCT1cysteine rich C-terminal 1 [Source:HGNC Symbol;Acc:HGNC:29875]270170.000-0.1559No
114RMSTrhabdomyosarcoma 2 associated transcript [Source:HGNC Symbol;Acc:HGNC:29893]271080.000-0.1583No
115CMKLR1chemerin chemokine-like receptor 1 [Source:HGNC Symbol;Acc:HGNC:2121]272780.000-0.1629No
116KRT33Bkeratin 33B [Source:HGNC Symbol;Acc:HGNC:6451]275410.000-0.1700No
117RBMY2FPRNA binding motif protein Y-linked family 2 member F, pseudogene [Source:HGNC Symbol;Acc:HGNC:23891]278480.000-0.1783No
118ANKRD36BP2ankyrin repeat domain 36B pseudogene 2 [Source:HGNC Symbol;Acc:HGNC:33607]279860.000-0.1820No
119STC1stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373]29896-0.453-0.2289No
120STX1Asyntaxin 1A [Source:HGNC Symbol;Acc:HGNC:11433]30170-0.531-0.2307No
121TMEM176Atransmembrane protein 176A [Source:HGNC Symbol;Acc:HGNC:24930]30810-0.683-0.2408No
122FCRL2Fc receptor like 2 [Source:HGNC Symbol;Acc:HGNC:14875]31357-0.852-0.2466No
123CASS4Cas scaffold protein family member 4 [Source:HGNC Symbol;Acc:HGNC:15878]31363-0.852-0.2378No
124LILRA6leukocyte immunoglobulin like receptor A6 [Source:HGNC Symbol;Acc:HGNC:15495]31902-1.026-0.2416No
125GSG1germ cell associated 1 [Source:HGNC Symbol;Acc:HGNC:19716]32783-1.360-0.2511No
126SPRY2sprouty RTK signaling antagonist 2 [Source:HGNC Symbol;Acc:HGNC:11270]32829-1.385-0.2378No
127SCELsciellin [Source:HGNC Symbol;Acc:HGNC:10573]33042-1.484-0.2279No
128GFI1growth factor independent 1 transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:4237]33340-1.529-0.2199No
129NFE2nuclear factor, erythroid 2 [Source:HGNC Symbol;Acc:HGNC:7780]33444-1.575-0.2061No
130KCNC2potassium voltage-gated channel subfamily C member 2 [Source:HGNC Symbol;Acc:HGNC:6234]33882-1.769-0.1993No
131PDE2Aphosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]33966-1.810-0.1826No
132KCNAB3potassium voltage-gated channel subfamily A regulatory beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:6230]35462-2.709-0.1945No
133LYL1LYL1 basic helix-loop-helix family member [Source:HGNC Symbol;Acc:HGNC:6734]35506-2.751-0.1668No
134MYCNMYCN proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7559]35841-3.020-0.1441No
135S100A5S100 calcium binding protein A5 [Source:HGNC Symbol;Acc:HGNC:10495]35857-3.032-0.1126No
136KIF24kinesin family member 24 [Source:HGNC Symbol;Acc:HGNC:19916]35897-3.066-0.0814No
137OSGIN1oxidative stress induced growth inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:30093]35943-3.119-0.0499No
138KIF5Akinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]36540-3.773-0.0263No
139H2AC13H2A clustered histone 13 [Source:HGNC Symbol;Acc:HGNC:4725]36644-3.9200.0121No
Table: GSEA details [plain text format]



Fig 2: KRAS.BREAST_UP.V1_UP   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: KRAS.BREAST_UP.V1_UP: Random ES distribution   
Gene set null distribution of ES for KRAS.BREAST_UP.V1_UP