Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List
| Dataset | greenberg_collapsed_to_symbols.Nof1.cls #WT_LPS_versus_WT_NA.Nof1.cls #WT_LPS_versus_WT_NA_repos |
| Phenotype | Nof1.cls#WT_LPS_versus_WT_NA_repos |
| Upregulated in class | WT_LPS |
| GeneSet | HALLMARK_ANGIOGENESIS |
| Enrichment Score (ES) | 0.58132297 |
| Normalized Enrichment Score (NES) | 1.2187895 |
| Nominal p-value | 0.15789473 |
| FDR q-value | 0.099719405 |
| FWER p-Value | 0.325 |
| SYMBOL | TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|
| 1 | TIMP1 | TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820] | 42 | 4.905 | 0.1503 | Yes |
| 2 | CCND2 | cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583] | 178 | 4.238 | 0.2776 | Yes |
| 3 | ITGAV | integrin subunit alpha V [Source:HGNC Symbol;Acc:HGNC:6150] | 401 | 3.458 | 0.3783 | Yes |
| 4 | SPP1 | secreted phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:11255] | 452 | 3.330 | 0.4798 | Yes |
| 5 | PDGFA | platelet derived growth factor subunit A [Source:HGNC Symbol;Acc:HGNC:8799] | 1334 | 1.916 | 0.5152 | Yes |
| 6 | VCAN | versican [Source:HGNC Symbol;Acc:HGNC:2464] | 1564 | 1.796 | 0.5645 | Yes |
| 7 | LPL | lipoprotein lipase [Source:HGNC Symbol;Acc:HGNC:6677] | 2332 | 1.214 | 0.5813 | Yes |
| 8 | PTK2 | protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611] | 3907 | 0.567 | 0.5564 | No |
| 9 | VEGFA | vascular endothelial growth factor A [Source:HGNC Symbol;Acc:HGNC:12680] | 4190 | 0.472 | 0.5633 | No |
| 10 | APP | amyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620] | 4561 | 0.350 | 0.5642 | No |
| 11 | APOH | apolipoprotein H [Source:HGNC Symbol;Acc:HGNC:616] | 6661 | 0.000 | 0.5075 | No |
| 12 | FGFR1 | fibroblast growth factor receptor 1 [Source:HGNC Symbol;Acc:HGNC:3688] | 7000 | 0.000 | 0.4984 | No |
| 13 | TNFRSF21 | TNF receptor superfamily member 21 [Source:HGNC Symbol;Acc:HGNC:13469] | 9152 | 0.000 | 0.4404 | No |
| 14 | KCNJ8 | potassium inwardly rectifying channel subfamily J member 8 [Source:HGNC Symbol;Acc:HGNC:6269] | 9715 | 0.000 | 0.4252 | No |
| 15 | POSTN | periostin [Source:HGNC Symbol;Acc:HGNC:16953] | 10142 | 0.000 | 0.4137 | No |
| 16 | PRG2 | proteoglycan 2, pro eosinophil major basic protein [Source:HGNC Symbol;Acc:HGNC:9362] | 11460 | 0.000 | 0.3781 | No |
| 17 | MSX1 | msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391] | 12386 | 0.000 | 0.3532 | No |
| 18 | THBD | thrombomodulin [Source:HGNC Symbol;Acc:HGNC:11784] | 12572 | 0.000 | 0.3482 | No |
| 19 | VTN | vitronectin [Source:HGNC Symbol;Acc:HGNC:12724] | 13165 | 0.000 | 0.3322 | No |
| 20 | OLR1 | oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133] | 16666 | 0.000 | 0.2378 | No |
| 21 | SERPINA5 | serpin family A member 5 [Source:HGNC Symbol;Acc:HGNC:8723] | 17759 | 0.000 | 0.2083 | No |
| 22 | LUM | lumican [Source:HGNC Symbol;Acc:HGNC:6724] | 18760 | 0.000 | 0.1813 | No |
| 23 | CXCL6 | C-X-C motif chemokine ligand 6 [Source:HGNC Symbol;Acc:HGNC:10643] | 19463 | 0.000 | 0.1624 | No |
| 24 | COL3A1 | collagen type III alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2201] | 19651 | 0.000 | 0.1573 | No |
| 25 | PF4 | platelet factor 4 [Source:HGNC Symbol;Acc:HGNC:8861] | 20024 | 0.000 | 0.1473 | No |
| 26 | SLCO2A1 | solute carrier organic anion transporter family member 2A1 [Source:HGNC Symbol;Acc:HGNC:10955] | 23823 | 0.000 | 0.0448 | No |
| 27 | COL5A2 | collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210] | 25047 | 0.000 | 0.0118 | No |
| 28 | PGLYRP1 | peptidoglycan recognition protein 1 [Source:HGNC Symbol;Acc:HGNC:8904] | 25534 | 0.000 | -0.0013 | No |
| 29 | FSTL1 | follistatin like 1 [Source:HGNC Symbol;Acc:HGNC:3972] | 26176 | 0.000 | -0.0186 | No |
| 30 | LRPAP1 | LDL receptor related protein associated protein 1 [Source:HGNC Symbol;Acc:HGNC:6701] | 28194 | -0.007 | -0.0729 | No |
| 31 | STC1 | stanniocalcin 1 [Source:HGNC Symbol;Acc:HGNC:11373] | 29896 | -0.453 | -0.1048 | No |
| 32 | S100A4 | S100 calcium binding protein A4 [Source:HGNC Symbol;Acc:HGNC:10494] | 31473 | -0.884 | -0.1200 | No |
| 33 | VAV2 | vav guanine nucleotide exchange factor 2 [Source:HGNC Symbol;Acc:HGNC:12658] | 31833 | -1.006 | -0.0986 | No |
| 34 | JAG2 | jagged canonical Notch ligand 2 [Source:HGNC Symbol;Acc:HGNC:6189] | 34267 | -1.971 | -0.1034 | No |
| 35 | JAG1 | jagged canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:6188] | 34589 | -2.143 | -0.0459 | No |
| 36 | NRP1 | neuropilin 1 [Source:HGNC Symbol;Acc:HGNC:8004] | 36463 | -3.670 | 0.0169 | No |
