Datasetgreenberg_collapsed_to_symbols.Nof1.cls
#WT_LPS_versus_WT_NA.Nof1.cls
#WT_LPS_versus_WT_NA_repos
PhenotypeNof1.cls#WT_LPS_versus_WT_NA_repos
Upregulated in classWT_LPS
GeneSetHALLMARK_APOPTOSIS
Enrichment Score (ES)0.44368845
Normalized Enrichment Score (NES)1.1944307
Nominal p-value0.04477612
FDR q-value0.11030228
FWER p-Value0.371
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_APOPTOSIS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1IL1Ainterleukin 1 alpha [Source:HGNC Symbol;Acc:HGNC:5991]114.9840.0196Yes
2IL1Binterleukin 1 beta [Source:HGNC Symbol;Acc:HGNC:5992]164.9730.0394Yes
3TIMP1TIMP metallopeptidase inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:11820]424.9050.0583Yes
4ISG20interferon stimulated exonuclease gene 20 [Source:HGNC Symbol;Acc:HGNC:6130]534.8740.0775Yes
5GADD45Bgrowth arrest and DNA damage inducible beta [Source:HGNC Symbol;Acc:HGNC:4096]1134.5840.0942Yes
6TNFtumor necrosis factor [Source:HGNC Symbol;Acc:HGNC:11892]1164.5540.1123Yes
7CCND2cyclin D2 [Source:HGNC Symbol;Acc:HGNC:1583]1784.2380.1276Yes
8BCL2L1BCL2 like 1 [Source:HGNC Symbol;Acc:HGNC:992]2474.0090.1418Yes
9IER3immediate early response 3 [Source:HGNC Symbol;Acc:HGNC:5392]2663.9400.1570Yes
10GCH1GTP cyclohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:4193]3213.7130.1704Yes
11IL6interleukin 6 [Source:HGNC Symbol;Acc:HGNC:6018]3513.6230.1841Yes
12TAP1transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]3713.5460.1977Yes
13CFLARCASP8 and FADD like apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:1876]4473.3450.2090Yes
14SOD2superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180]4603.3180.2220Yes
15CD14CD14 molecule [Source:HGNC Symbol;Acc:HGNC:1628]5013.2050.2337Yes
16CASP8caspase 8 [Source:HGNC Symbol;Acc:HGNC:1509]5113.1730.2461Yes
17GADD45Agrowth arrest and DNA damage inducible alpha [Source:HGNC Symbol;Acc:HGNC:4095]5283.1140.2581Yes
18ATF3activating transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:785]5333.1060.2704Yes
19SQSTM1sequestosome 1 [Source:HGNC Symbol;Acc:HGNC:11280]5393.0980.2827Yes
20CD44CD44 molecule (Indian blood group) [Source:HGNC Symbol;Acc:HGNC:1681]5713.0680.2941Yes
21CLUclusterin [Source:HGNC Symbol;Acc:HGNC:2095]6062.9830.3051Yes
22MMP2matrix metallopeptidase 2 [Source:HGNC Symbol;Acc:HGNC:7166]6102.9740.3169Yes
23IFITM3interferon induced transmembrane protein 3 [Source:HGNC Symbol;Acc:HGNC:5414]6352.9260.3279Yes
24FASFas cell surface death receptor [Source:HGNC Symbol;Acc:HGNC:11920]7072.7730.3371Yes
25BTG2BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]9302.4640.3409Yes
26SMAD7SMAD family member 7 [Source:HGNC Symbol;Acc:HGNC:6773]9392.4450.3504Yes
27TSPOtranslocator protein [Source:HGNC Symbol;Acc:HGNC:1158]10662.2390.3560Yes
28PDGFRBplatelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]11012.1950.3638Yes
29TNFRSF12ATNF receptor superfamily member 12A [Source:HGNC Symbol;Acc:HGNC:18152]11272.1550.3717Yes
30PEA15proliferation and apoptosis adaptor protein 15 [Source:HGNC Symbol;Acc:HGNC:8822]11292.1540.3803Yes
31HMOX1heme oxygenase 1 [Source:HGNC Symbol;Acc:HGNC:5013]12751.9770.3843Yes
32BCL2L11BCL2 like 11 [Source:HGNC Symbol;Acc:HGNC:994]12761.9750.3922Yes
33CTHcystathionine gamma-lyase [Source:HGNC Symbol;Acc:HGNC:2501]13251.9250.3986Yes
34IRF1interferon regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:6116]13381.9130.4059Yes
35DNAJA1DnaJ heat shock protein family (Hsp40) member A1 [Source:HGNC Symbol;Acc:HGNC:5229]13591.8880.4129Yes
36BIDBH3 interacting domain death agonist [Source:HGNC Symbol;Acc:HGNC:1050]14951.8020.4164Yes
37ETF1eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]16381.7170.4194Yes
38SLC20A1solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]18731.5200.4192Yes
39SAT1spermidine/spermine N1-acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10540]18771.5180.4251Yes
40CDKN1Acyclin dependent kinase inhibitor 1A [Source:HGNC Symbol;Acc:HGNC:1784]19701.4560.4285Yes
41ANXA1annexin A1 [Source:HGNC Symbol;Acc:HGNC:533]19851.4380.4338Yes
42CASP1caspase 1 [Source:HGNC Symbol;Acc:HGNC:1499]20251.4070.4384Yes
43BIRC3baculoviral IAP repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:591]21311.3350.4409Yes
44PSEN1presenilin 1 [Source:HGNC Symbol;Acc:HGNC:9508]22191.2910.4437Yes
45CREBBPCREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]24351.1550.4425No
46CASP7caspase 7 [Source:HGNC Symbol;Acc:HGNC:1508]28050.9820.4364No
47NEDD9neural precursor cell expressed, developmentally down-regulated 9 [Source:HGNC Symbol;Acc:HGNC:7733]28210.9820.4399No
48BTG3BTG anti-proliferation factor 3 [Source:HGNC Symbol;Acc:HGNC:1132]33360.7670.4291No
49DDIT3DNA damage inducible transcript 3 [Source:HGNC Symbol;Acc:HGNC:2726]33480.7590.4318No
50ROCK1Rho associated coiled-coil containing protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:10251]37490.6200.4234No
51PTK2protein tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:9611]39070.5670.4215No
52BCL10BCL10 immune signaling adaptor [Source:HGNC Symbol;Acc:HGNC:989]41260.4940.4175No
53RELARELA proto-oncogene, NF-kB subunit [Source:HGNC Symbol;Acc:HGNC:9955]41830.4760.4179No
54MCL1MCL1 apoptosis regulator, BCL2 family member [Source:HGNC Symbol;Acc:HGNC:6943]44680.3750.4117No
55APPamyloid beta precursor protein [Source:HGNC Symbol;Acc:HGNC:620]45610.3500.4106No
56DNAJC3DnaJ heat shock protein family (Hsp40) member C3 [Source:HGNC Symbol;Acc:HGNC:9439]48130.2820.4050No
57ERBB3erb-b2 receptor tyrosine kinase 3 [Source:HGNC Symbol;Acc:HGNC:3431]48380.2760.4054No
58MADDMAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]49190.2560.4043No
59XIAPX-linked inhibitor of apoptosis [Source:HGNC Symbol;Acc:HGNC:592]49830.2350.4035No
60CTNNB1catenin beta 1 [Source:HGNC Symbol;Acc:HGNC:2514]50900.2020.4014No
61IGF2Rinsulin like growth factor 2 receptor [Source:HGNC Symbol;Acc:HGNC:5467]51440.1890.4008No
62BCL2L10BCL2 like 10 [Source:HGNC Symbol;Acc:HGNC:993]72020.0000.3451No
63CCNA1cyclin A1 [Source:HGNC Symbol;Acc:HGNC:1577]74100.0000.3395No
64PLPPR4phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]75020.0000.3370No
65GUCY2Dguanylate cyclase 2D, retinal [Source:HGNC Symbol;Acc:HGNC:4689]82700.0000.3162No
66FEZ1fasciculation and elongation protein zeta 1 [Source:HGNC Symbol;Acc:HGNC:3659]90610.0000.2948No
67GPX3glutathione peroxidase 3 [Source:HGNC Symbol;Acc:HGNC:4555]93460.0000.2871No
68NEFHneurofilament heavy [Source:HGNC Symbol;Acc:HGNC:7737]95530.0000.2816No
69PLATplasminogen activator, tissue type [Source:HGNC Symbol;Acc:HGNC:9051]98000.0000.2749No
70HSPB1heat shock protein family B (small) member 1 [Source:HGNC Symbol;Acc:HGNC:5246]107100.0000.2503No
71LEF1lymphoid enhancer binding factor 1 [Source:HGNC Symbol;Acc:HGNC:6551]112360.0000.2361No
72PRF1perforin 1 [Source:HGNC Symbol;Acc:HGNC:9360]114290.0000.2309No
73EREGepiregulin [Source:HGNC Symbol;Acc:HGNC:3443]114390.0000.2306No
74IGFBP6insulin like growth factor binding protein 6 [Source:HGNC Symbol;Acc:HGNC:5475]117350.0000.2226No
75ERBB2erb-b2 receptor tyrosine kinase 2 [Source:HGNC Symbol;Acc:HGNC:3430]119640.0000.2165No
76TNFSF10TNF superfamily member 10 [Source:HGNC Symbol;Acc:HGNC:11925]123190.0000.2069No
77IL18interleukin 18 [Source:HGNC Symbol;Acc:HGNC:5986]136870.0000.1699No
78BGNbiglycan [Source:HGNC Symbol;Acc:HGNC:1044]154420.0000.1224No
79BIKBCL2 interacting killer [Source:HGNC Symbol;Acc:HGNC:1051]154510.0000.1221No
80CD2CD2 molecule [Source:HGNC Symbol;Acc:HGNC:1639]156460.0000.1169No
81DCNdecorin [Source:HGNC Symbol;Acc:HGNC:2705]159280.0000.1093No
82F2coagulation factor II, thrombin [Source:HGNC Symbol;Acc:HGNC:3535]160570.0000.1058No
83F2Rcoagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]164040.0000.0965No
84AVPR1Aarginine vasopressin receptor 1A [Source:HGNC Symbol;Acc:HGNC:895]165500.0000.0925No
85TGFB2transforming growth factor beta 2 [Source:HGNC Symbol;Acc:HGNC:11768]165950.0000.0913No
86TIMP3TIMP metallopeptidase inhibitor 3 [Source:HGNC Symbol;Acc:HGNC:11822]170720.0000.0784No
87HGFhepatocyte growth factor [Source:HGNC Symbol;Acc:HGNC:4893]173090.0000.0721No
88DPYDdihydropyrimidine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:3012]180980.0000.0507No
89LUMlumican [Source:HGNC Symbol;Acc:HGNC:6724]187600.0000.0328No
90AIFM3apoptosis inducing factor mitochondria associated 3 [Source:HGNC Symbol;Acc:HGNC:26398]199660.0000.0002No
91IFNB1interferon beta 1 [Source:HGNC Symbol;Acc:HGNC:5434]217930.000-0.0493No
92PMAIP1phorbol-12-myristate-13-acetate-induced protein 1 [Source:HGNC Symbol;Acc:HGNC:9108]228380.000-0.0775No
93CASP4caspase 4 [Source:HGNC Symbol;Acc:HGNC:1505]240180.000-0.1095No
94FASLGFas ligand [Source:HGNC Symbol;Acc:HGNC:11936]249470.000-0.1346No
95IFNGR1interferon gamma receptor 1 [Source:HGNC Symbol;Acc:HGNC:5439]252010.000-0.1414No
96SATB1SATB homeobox 1 [Source:HGNC Symbol;Acc:HGNC:10541]263860.000-0.1735No
97KRT18keratin 18 [Source:HGNC Symbol;Acc:HGNC:6430]268470.000-0.1859No
98CD38CD38 molecule [Source:HGNC Symbol;Acc:HGNC:1667]279330.000-0.2153No
99CD69CD69 molecule [Source:HGNC Symbol;Acc:HGNC:1694]280150.000-0.2175No
100TGFBR3transforming growth factor beta receptor 3 [Source:HGNC Symbol;Acc:HGNC:11774]281630.000-0.2215No
101BAXBCL2 associated X, apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:959]28422-0.074-0.2282No
102DIABLOdiablo IAP-binding mitochondrial protein [Source:HGNC Symbol;Acc:HGNC:21528]28663-0.142-0.2341No
103GSRglutathione-disulfide reductase [Source:HGNC Symbol;Acc:HGNC:4623]29272-0.303-0.2494No
104RARAretinoic acid receptor alpha [Source:HGNC Symbol;Acc:HGNC:9864]29274-0.304-0.2482No
105GNA15G protein subunit alpha 15 [Source:HGNC Symbol;Acc:HGNC:4383]29483-0.358-0.2524No
106RNASELribonuclease L [Source:HGNC Symbol;Acc:HGNC:10050]29526-0.370-0.2521No
107PPP2R5Bprotein phosphatase 2 regulatory subunit B'beta [Source:HGNC Symbol;Acc:HGNC:9310]29531-0.370-0.2507No
108VDAC2voltage dependent anion channel 2 [Source:HGNC Symbol;Acc:HGNC:12672]29606-0.391-0.2511No
109BCAP31B cell receptor associated protein 31 [Source:HGNC Symbol;Acc:HGNC:16695]29815-0.434-0.2550No
110SPTAN1spectrin alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]30003-0.483-0.2582No
111BCL2L2BCL2 like 2 [Source:HGNC Symbol;Acc:HGNC:995]30092-0.509-0.2585No
112SOD1superoxide dismutase 1 [Source:HGNC Symbol;Acc:HGNC:11179]30358-0.568-0.2634No
113RHOT2ras homolog family member T2 [Source:HGNC Symbol;Acc:HGNC:21169]30380-0.574-0.2617No
114ANKHANKH inorganic pyrophosphate transport regulator [Source:HGNC Symbol;Acc:HGNC:15492]30440-0.590-0.2609No
115TIMP2TIMP metallopeptidase inhibitor 2 [Source:HGNC Symbol;Acc:HGNC:11821]30494-0.605-0.2599No
116PPP3R1protein phosphatase 3 regulatory subunit B, alpha [Source:HGNC Symbol;Acc:HGNC:9317]30642-0.644-0.2614No
117ADD1adducin 1 [Source:HGNC Symbol;Acc:HGNC:243]31132-0.793-0.2714No
118JUNJun proto-oncogene, AP-1 transcription factor subunit [Source:HGNC Symbol;Acc:HGNC:6204]31717-0.967-0.2834No
119PSEN2presenilin 2 [Source:HGNC Symbol;Acc:HGNC:9509]31751-0.978-0.2804No
120HMGB2high mobility group box 2 [Source:HGNC Symbol;Acc:HGNC:5000]31758-0.979-0.2766No
121SC5Dsterol-C5-desaturase [Source:HGNC Symbol;Acc:HGNC:10547]32015-1.070-0.2793No
122DFFADNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]32494-1.248-0.2872No
123CASP9caspase 9 [Source:HGNC Symbol;Acc:HGNC:1511]32849-1.399-0.2912No
124DNM1Ldynamin 1 like [Source:HGNC Symbol;Acc:HGNC:2973]32929-1.436-0.2876No
125CAV1caveolin 1 [Source:HGNC Symbol;Acc:HGNC:1527]33139-1.524-0.2872No
126BMP2bone morphogenetic protein 2 [Source:HGNC Symbol;Acc:HGNC:1069]33167-1.529-0.2818No
127RHOBras homolog family member B [Source:HGNC Symbol;Acc:HGNC:668]33398-1.552-0.2819No
128CYLDCYLD lysine 63 deubiquitinase [Source:HGNC Symbol;Acc:HGNC:2584]33572-1.634-0.2800No
129PAK1p21 (RAC1) activated kinase 1 [Source:HGNC Symbol;Acc:HGNC:8590]33586-1.639-0.2738No
130DAPdeath associated protein [Source:HGNC Symbol;Acc:HGNC:2672]33594-1.644-0.2675No
131EGR3early growth response 3 [Source:HGNC Symbol;Acc:HGNC:3240]33612-1.651-0.2613No
132EBPEBP cholestenol delta-isomerase [Source:HGNC Symbol;Acc:HGNC:3133]33746-1.708-0.2581No
133LMNAlamin A/C [Source:HGNC Symbol;Acc:HGNC:6636]33993-1.825-0.2575No
134CASP2caspase 2 [Source:HGNC Symbol;Acc:HGNC:1503]34041-1.850-0.2514No
135DAP3death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]34107-1.879-0.2456No
136CDKN1Bcyclin dependent kinase inhibitor 1B [Source:HGNC Symbol;Acc:HGNC:1785]34171-1.915-0.2397No
137CCND1cyclin D1 [Source:HGNC Symbol;Acc:HGNC:1582]34232-1.946-0.2335No
138CDK2cyclin dependent kinase 2 [Source:HGNC Symbol;Acc:HGNC:1771]34829-2.298-0.2405No
139CASP3caspase 3 [Source:HGNC Symbol;Acc:HGNC:1504]34935-2.377-0.2338No
140ENO2enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]35052-2.392-0.2274No
141LGALS3galectin 3 [Source:HGNC Symbol;Acc:HGNC:6563]35068-2.402-0.2182No
142RETSATretinol saturase [Source:HGNC Symbol;Acc:HGNC:25991]35081-2.410-0.2089No
143MGMTO-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]35134-2.453-0.2005No
144PPT1palmitoyl-protein thioesterase 1 [Source:HGNC Symbol;Acc:HGNC:9325]35210-2.523-0.1925No
145TOP2ADNA topoisomerase II alpha [Source:HGNC Symbol;Acc:HGNC:11989]35635-2.889-0.1924No
146GPX4glutathione peroxidase 4 [Source:HGNC Symbol;Acc:HGNC:4556]35711-2.911-0.1828No
147GPX1glutathione peroxidase 1 [Source:HGNC Symbol;Acc:HGNC:4553]35723-2.921-0.1715No
148GSNgelsolin [Source:HGNC Symbol;Acc:HGNC:4620]35909-3.083-0.1642No
149TXNIPthioredoxin interacting protein [Source:HGNC Symbol;Acc:HGNC:16952]35949-3.129-0.1527No
150PLCB2phospholipase C beta 2 [Source:HGNC Symbol;Acc:HGNC:9055]36083-3.256-0.1433No
151GSTM1glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:HGNC:4632]36090-3.270-0.1304No
152EMP1epithelial membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:3333]36195-3.389-0.1197No
153FDXRferredoxin reductase [Source:HGNC Symbol;Acc:HGNC:3642]36245-3.446-0.1073No
154BRCA1BRCA1 DNA repair associated [Source:HGNC Symbol;Acc:HGNC:1100]36365-3.555-0.0963No
155CASP6caspase 6 [Source:HGNC Symbol;Acc:HGNC:1507]36467-3.676-0.0843No
156BNIP3LBCL2 interacting protein 3 like [Source:HGNC Symbol;Acc:HGNC:1085]36549-3.784-0.0714No
157H1-0H1.0 linker histone [Source:HGNC Symbol;Acc:HGNC:4714]36734-4.032-0.0603No
158CDC25Bcell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]36804-4.128-0.0457No
159WEE1WEE1 G2 checkpoint kinase [Source:HGNC Symbol;Acc:HGNC:12761]36881-4.323-0.0305No
160PDCD4programmed cell death 4 [Source:HGNC Symbol;Acc:HGNC:8763]36902-4.367-0.0136No
161BMFBcl2 modifying factor [Source:HGNC Symbol;Acc:HGNC:24132]37008-4.6620.0022No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_APOPTOSIS   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_APOPTOSIS: Random ES distribution   
Gene set null distribution of ES for HALLMARK_APOPTOSIS